Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:86865766-87495768

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6 6 4464884 to 87426034 82961150 QTL collagen induced arthritis QTL 6
Pgia19 6 45314059 to 87426034 42111975 QTL proteoglycan induced arthritis 19
Aak1 6 86849517 to 87003223 153706 + protein coding gene AP2 associated kinase 1
Tssr57515 6 86870810 to 86870813 3 + TSS region transcription start site region 57515
Gm44152 6 86873786 to 86875476 1690 + unclassified gene predicted gene, 44152
D6Mit323 6 86899315 to 86899438 123 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 323
Tssr57516 6 86943243 to 86943251 8 + TSS region transcription start site region 57516
Tssr57517 6 86946858 to 86946881 23 + TSS region transcription start site region 57517
Tssr57518 6 86946919 to 86946942 23 + TSS region transcription start site region 57518
Tssr57519 6 86949538 to 86949563 25 + TSS region transcription start site region 57519
Tssr57520 6 86955143 to 86955180 37 + TSS region transcription start site region 57520
Tssr57521 6 86955223 to 86955230 7 + TSS region transcription start site region 57521
Gm44093 6 86961641 to 86963442 1801 + unclassified gene predicted gene, 44093
Gm44091 6 86976529 to 86977177 648 + sense intronic lncRNA gene predicted gene, 44091
Gm38495 6 86994977 to 87003227 8250 + protein coding gene predicted gene, 38495
Tssr57522 6 87009230 to 87009253 23 + TSS region transcription start site region 57522
Nfu1 6 87009291 to 87028461 19170 + protein coding gene NFU1 iron-sulfur cluster scaffold
Cpgi17672 6 87009712 to 87010340 628 CpG island CpG island 17672
Tssr57523 6 87009872 to 87009893 21 + TSS region transcription start site region 57523
Tssr57524 6 87022996 to 87023009 13 + TSS region transcription start site region 57524
Tssr57525 6 87038504 to 87038524 20 + TSS region transcription start site region 57525
Cpgi17673 6 87042194 to 87043370 1176 CpG island CpG island 17673
Tssr57526 6 87042838 to 87042918 80 + TSS region transcription start site region 57526
Gfpt1 6 87042846 to 87092197 49351 + protein coding gene glutamine fructose-6-phosphate transaminase 1
Tssr57527 6 87069546 to 87069557 11 + TSS region transcription start site region 57527
Tssr57528 6 87073074 to 87073085 11 + TSS region transcription start site region 57528
Tssr57529 6 87073087 to 87073098 11 + TSS region transcription start site region 57529
Tssr57530 6 87093471 to 87093503 32 + TSS region transcription start site region 57530
Tssr57531 6 87104744 to 87104752 8 + TSS region transcription start site region 57531
D6Ertd527e 6 87104746 to 87112997 8251 + protein coding gene DNA segment, Chr 6, ERATO Doi 527, expressed
Gm40382 6 87127045 to 87132739 5694 - lncRNA gene predicted gene, 40382
Antxr1 6 87133853 to 87335809 201956 - protein coding gene anthrax toxin receptor 1
Tssr61868 6 87136504 to 87136516 12 - TSS region transcription start site region 61868
Gm44415 6 87138741 to 87140852 2111 - unclassified gene predicted gene, 44415
Gm44416 6 87171944 to 87174009 2065 - unclassified gene predicted gene, 44416
Tssr61869 6 87180766 to 87180768 2 - TSS region transcription start site region 61869
Tssr61870 6 87182653 to 87182665 12 - TSS region transcription start site region 61870
Tssr57532 6 87183485 to 87183491 6 + TSS region transcription start site region 57532
Tssr61871 6 87188231 to 87188243 12 - TSS region transcription start site region 61871
Gm38851 6 87221250 to 87267447 46197 + lncRNA gene predicted gene, 38851
Tssr61872 6 87228698 to 87228714 16 - TSS region transcription start site region 61872
Tssr61873 6 87228818 to 87228833 15 - TSS region transcription start site region 61873
Gm44417 6 87252250 to 87255608 3358 - unclassified gene predicted gene, 44417
Tssr61874 6 87255851 to 87255889 38 - TSS region transcription start site region 61874
Tssr57533 6 87277701 to 87277730 29 + TSS region transcription start site region 57533
Tssr57534 6 87277738 to 87277750 12 + TSS region transcription start site region 57534
Gm44418 6 87277745 to 87279750 2005 + antisense lncRNA gene predicted gene, 44418
n-R5s164 6 87281149 to 87281260 111 + rRNA gene nuclear encoded rRNA 5S 164
Gm34170 6 87282774 to 87285453 2679 + lncRNA gene predicted gene, 34170
Tssr61875 6 87287204 to 87287255 51 - TSS region transcription start site region 61875
Tssr61876 6 87287268 to 87287282 14 - TSS region transcription start site region 61876
Cpgi17674 6 87289788 to 87290064 276 CpG island CpG island 17674
9530013L04Rik 6 87321558 to 87322339 781 - unclassified gene RIKEN cDNA 9530013L04 gene
Gm34090 6 87323067 to 87332036 8969 - lncRNA gene predicted gene, 34090
Gm44414 6 87332752 to 87334860 2108 - unclassified gene predicted gene, 44414
Cpgi17675 6 87335136 to 87335773 637 CpG island CpG island 17675
Tssr61877 6 87335474 to 87335483 9 - TSS region transcription start site region 61877
Tssr61878 6 87335497 to 87335512 15 - TSS region transcription start site region 61878
Tssr61879 6 87335535 to 87335561 26 - TSS region transcription start site region 61879
Tssr61880 6 87335699 to 87335706 7 - TSS region transcription start site region 61880
Tssr61881 6 87335707 to 87335724 17 - TSS region transcription start site region 61881
Tssr61882 6 87335727 to 87335756 29 - TSS region transcription start site region 61882
Tssr61883 6 87335758 to 87335769 11 - TSS region transcription start site region 61883
Gkn1 6 87345653 to 87350915 5262 - protein coding gene gastrokine 1
Tssr1923 6 87346196 to 87346203 7 - TSS region transcription start site region 1923
Tssr61884 6 87346348 to 87346367 19 - TSS region transcription start site region 61884
Tssr57535 6 87347066 to 87347071 5 + TSS region transcription start site region 57535
Tssr61885 6 87349043 to 87349073 30 - TSS region transcription start site region 61885
Tssr61886 6 87350904 to 87350921 17 - TSS region transcription start site region 61886
Tssr57536 6 87373357 to 87373370 13 + TSS region transcription start site region 57536
Gkn2 6 87373365 to 87379494 6129 + protein coding gene gastrokine 2
Tssr57537 6 87375750 to 87375768 18 + TSS region transcription start site region 57537
Tssr57538 6 87375788 to 87375796 8 + TSS region transcription start site region 57538
Tssr57539 6 87375808 to 87375822 14 + TSS region transcription start site region 57539
Tssr57540 6 87378127 to 87378141 14 + TSS region transcription start site region 57540
Tssr61887 6 87378237 to 87378275 38 - TSS region transcription start site region 61887
Tssr57541 6 87379285 to 87379292 7 + TSS region transcription start site region 57541
Tssr1924 6 87379350 to 87379356 6 + TSS region transcription start site region 1924
Tssr57542 6 87379363 to 87379374 11 + TSS region transcription start site region 57542
Tssr61888 6 87379464 to 87379499 35 - TSS region transcription start site region 61888
Gkn3 6 87383319 to 87388935 5616 - protein coding gene gastrokine 3
Tssr61889 6 87388846 to 87388862 16 - TSS region transcription start site region 61889
Tssr61890 6 87388878 to 87388892 14 - TSS region transcription start site region 61890
Skl3 6 87425898 to 87426034 136 QTL skeletal size (tail length) 3
Egrm2 6 87425898 to 87426034 136 QTL early growth rate, maternal effect 2
D6Mit9 6 87425898 to 87426034 136 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 9
Bits2 6 87425898 to 87426034 136 QTL bitterness sensitivity 2
Tssr57543 6 87428986 to 87429000 14 + TSS region transcription start site region 57543
Bmp10 6 87428994 to 87434512 5518 + protein coding gene bone morphogenetic protein 10
Tssr57544 6 87429076 to 87429087 11 + TSS region transcription start site region 57544
Tssr61891 6 87458097 to 87458123 26 - TSS region transcription start site region 61891
Tssr61892 6 87458246 to 87458259 13 - TSS region transcription start site region 61892
Arhgap25 6 87458545 to 87533259 74714 - protein coding gene Rho GTPase activating protein 25
Tssr61893 6 87459215 to 87459229 14 - TSS region transcription start site region 61893
Tssr61894 6 87459269 to 87459293 24 - TSS region transcription start site region 61894
Tssr61895 6 87459331 to 87459340 9 - TSS region transcription start site region 61895
Tssr61896 6 87459475 to 87459515 40 - TSS region transcription start site region 61896
Tssr61897 6 87467951 to 87467977 26 - TSS region transcription start site region 61897
Tssr61898 6 87483381 to 87483392 11 - TSS region transcription start site region 61898
Tssr61899 6 87491152 to 87491164 12 - TSS region transcription start site region 61899