Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:86718846-88058862

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301 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6 6 4464884 to 87426034 82961150 QTL collagen induced arthritis QTL 6
Pgia19 6 45314059 to 87426034 42111975 QTL proteoglycan induced arthritis 19
Gmcl1 6 86691768 to 86733383 41615 - protein coding gene germ cell-less, spermatogenesis associated 1
Cpgi17669 6 86732511 to 86733922 1411 CpG island CpG island 17669
Tssr61836 6 86733218 to 86733256 38 - TSS region transcription start site region 61836
Tssr61837 6 86733268 to 86733394 126 - TSS region transcription start site region 61837
Gm44036 6 86733489 to 86737065 3576 + lincRNA gene predicted gene, 44036
Tssr57504 6 86733641 to 86733664 23 + TSS region transcription start site region 57504
Anxa4 6 86736840 to 86793584 56744 - protein coding gene annexin A4
Tssr61838 6 86737242 to 86737254 12 - TSS region transcription start site region 61838
Tssr61839 6 86737693 to 86737696 3 - TSS region transcription start site region 61839
Tssr61840 6 86737701 to 86737715 14 - TSS region transcription start site region 61840
Tssr61841 6 86737733 to 86737744 11 - TSS region transcription start site region 61841
Tssr61842 6 86737766 to 86737778 12 - TSS region transcription start site region 61842
Tssr61843 6 86741933 to 86741966 33 - TSS region transcription start site region 61843
Tssr61844 6 86743174 to 86743206 32 - TSS region transcription start site region 61844
Tssr57505 6 86748930 to 86748962 32 + TSS region transcription start site region 57505
Tssr61845 6 86753884 to 86753896 12 - TSS region transcription start site region 61845
Tssr61846 6 86754898 to 86754911 13 - TSS region transcription start site region 61846
Tssr61847 6 86761165 to 86761171 6 - TSS region transcription start site region 61847
Tssr61848 6 86761189 to 86761205 16 - TSS region transcription start site region 61848
Tssr61849 6 86765425 to 86765427 2 - TSS region transcription start site region 61849
Tssr1922 6 86765599 to 86765605 6 - TSS region transcription start site region 1922
Tssr61850 6 86765809 to 86765834 25 - TSS region transcription start site region 61850
Tssr61851 6 86765866 to 86765921 55 - TSS region transcription start site region 61851
Tssr61852 6 86772343 to 86772385 42 - TSS region transcription start site region 61852
Tssr61853 6 86775071 to 86775098 27 - TSS region transcription start site region 61853
Tssr61854 6 86775104 to 86775120 16 - TSS region transcription start site region 61854
Tssr61855 6 86775161 to 86775183 22 - TSS region transcription start site region 61855
Tssr61856 6 86780697 to 86780706 9 - TSS region transcription start site region 61856
Tssr61857 6 86780935 to 86780964 29 - TSS region transcription start site region 61857
Tssr61858 6 86781018 to 86781028 10 - TSS region transcription start site region 61858
Tssr61859 6 86783522 to 86783537 15 - TSS region transcription start site region 61859
Tssr57506 6 86785062 to 86785082 20 + TSS region transcription start site region 57506
Tssr57507 6 86785487 to 86785500 13 + TSS region transcription start site region 57507
Tssr61860 6 86785519 to 86785532 13 - TSS region transcription start site region 61860
Tssr61861 6 86785547 to 86785559 12 - TSS region transcription start site region 61861
Tssr61862 6 86787541 to 86787588 47 - TSS region transcription start site region 61862
Tssr61863 6 86790129 to 86790133 4 - TSS region transcription start site region 61863
Tssr57508 6 86790721 to 86790734 13 + TSS region transcription start site region 57508
Cpgi17670 6 86792932 to 86793873 941 CpG island CpG island 17670
Tssr61864 6 86793522 to 86793582 60 - TSS region transcription start site region 61864
Tssr61865 6 86793590 to 86793601 11 - TSS region transcription start site region 61865
Tssr61866 6 86795692 to 86795733 41 - TSS region transcription start site region 61866
Tssr61867 6 86796568 to 86796585 17 - TSS region transcription start site region 61867
D6Mit29 6 86806805 to 86806927 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 29
D6Dcr21 6 86806828 to 86806926 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 21
2610306M01Rik 6 86848407 to 86849440 1033 - bidirectional promoter lncRNA gene RIKEN cDNA 2610306M01 gene
Cpgi17671 6 86848645 to 86850315 1670 CpG island CpG island 17671
Tssr57509 6 86849266 to 86849335 69 + TSS region transcription start site region 57509
Tssr57510 6 86849443 to 86849454 11 + TSS region transcription start site region 57510
Tssr57511 6 86849488 to 86849594 106 + TSS region transcription start site region 57511
Aak1 6 86849517 to 87003223 153706 + protein coding gene AP2 associated kinase 1
Tssr57512 6 86850892 to 86850910 18 + TSS region transcription start site region 57512
Tssr57513 6 86850922 to 86850933 11 + TSS region transcription start site region 57513
Gm44153 6 86862873 to 86864452 1579 + unclassified gene predicted gene, 44153
Tssr57514 6 86864927 to 86864931 4 + TSS region transcription start site region 57514
Tssr57515 6 86870810 to 86870813 3 + TSS region transcription start site region 57515
Gm44152 6 86873786 to 86875476 1690 + unclassified gene predicted gene, 44152
D6Mit323 6 86899315 to 86899438 123 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 323
Tssr57516 6 86943243 to 86943251 8 + TSS region transcription start site region 57516
Tssr57517 6 86946858 to 86946881 23 + TSS region transcription start site region 57517
Tssr57518 6 86946919 to 86946942 23 + TSS region transcription start site region 57518
Tssr57519 6 86949538 to 86949563 25 + TSS region transcription start site region 57519
Tssr57520 6 86955143 to 86955180 37 + TSS region transcription start site region 57520
Tssr57521 6 86955223 to 86955230 7 + TSS region transcription start site region 57521
Gm44093 6 86961641 to 86963442 1801 + unclassified gene predicted gene, 44093
Gm44091 6 86976529 to 86977177 648 + sense intronic lncRNA gene predicted gene, 44091
Gm38495 6 86994977 to 87003227 8250 + protein coding gene predicted gene, 38495
Tssr57522 6 87009230 to 87009253 23 + TSS region transcription start site region 57522
Nfu1 6 87009291 to 87028461 19170 + protein coding gene NFU1 iron-sulfur cluster scaffold
Cpgi17672 6 87009712 to 87010340 628 CpG island CpG island 17672
Tssr57523 6 87009872 to 87009893 21 + TSS region transcription start site region 57523
Tssr57524 6 87022996 to 87023009 13 + TSS region transcription start site region 57524
Tssr57525 6 87038504 to 87038524 20 + TSS region transcription start site region 57525
Cpgi17673 6 87042194 to 87043370 1176 CpG island CpG island 17673
Tssr57526 6 87042838 to 87042918 80 + TSS region transcription start site region 57526
Gfpt1 6 87042846 to 87092197 49351 + protein coding gene glutamine fructose-6-phosphate transaminase 1
Tssr57527 6 87069546 to 87069557 11 + TSS region transcription start site region 57527
Tssr57528 6 87073074 to 87073085 11 + TSS region transcription start site region 57528
Tssr57529 6 87073087 to 87073098 11 + TSS region transcription start site region 57529
Tssr57530 6 87093471 to 87093503 32 + TSS region transcription start site region 57530
Tssr57531 6 87104744 to 87104752 8 + TSS region transcription start site region 57531
D6Ertd527e 6 87104746 to 87112997 8251 + protein coding gene DNA segment, Chr 6, ERATO Doi 527, expressed
Gm40382 6 87127045 to 87132739 5694 - lncRNA gene predicted gene, 40382
Antxr1 6 87133853 to 87335809 201956 - protein coding gene anthrax toxin receptor 1
Tssr61868 6 87136504 to 87136516 12 - TSS region transcription start site region 61868
Gm44415 6 87138741 to 87140852 2111 - unclassified gene predicted gene, 44415
Gm44416 6 87171944 to 87174009 2065 - unclassified gene predicted gene, 44416
Tssr61869 6 87180766 to 87180768 2 - TSS region transcription start site region 61869
Tssr61870 6 87182653 to 87182665 12 - TSS region transcription start site region 61870
Tssr57532 6 87183485 to 87183491 6 + TSS region transcription start site region 57532
Tssr61871 6 87188231 to 87188243 12 - TSS region transcription start site region 61871
Gm38851 6 87221250 to 87267447 46197 + lncRNA gene predicted gene, 38851
Tssr61872 6 87228698 to 87228714 16 - TSS region transcription start site region 61872
Tssr61873 6 87228818 to 87228833 15 - TSS region transcription start site region 61873
Gm44417 6 87252250 to 87255608 3358 - unclassified gene predicted gene, 44417
Tssr61874 6 87255851 to 87255889 38 - TSS region transcription start site region 61874
Tssr57533 6 87277701 to 87277730 29 + TSS region transcription start site region 57533
Tssr57534 6 87277738 to 87277750 12 + TSS region transcription start site region 57534
Gm44418 6 87277745 to 87279750 2005 + antisense lncRNA gene predicted gene, 44418
n-R5s164 6 87281149 to 87281260 111 + rRNA gene nuclear encoded rRNA 5S 164
Gm34170 6 87282774 to 87285453 2679 + lncRNA gene predicted gene, 34170
Tssr61875 6 87287204 to 87287255 51 - TSS region transcription start site region 61875
Tssr61876 6 87287268 to 87287282 14 - TSS region transcription start site region 61876
Cpgi17674 6 87289788 to 87290064 276 CpG island CpG island 17674
9530013L04Rik 6 87321558 to 87322339 781 - unclassified gene RIKEN cDNA 9530013L04 gene
Gm34090 6 87323067 to 87332036 8969 - lncRNA gene predicted gene, 34090
Gm44414 6 87332752 to 87334860 2108 - unclassified gene predicted gene, 44414
Cpgi17675 6 87335136 to 87335773 637 CpG island CpG island 17675
Tssr61877 6 87335474 to 87335483 9 - TSS region transcription start site region 61877
Tssr61878 6 87335497 to 87335512 15 - TSS region transcription start site region 61878
Tssr61879 6 87335535 to 87335561 26 - TSS region transcription start site region 61879
Tssr61880 6 87335699 to 87335706 7 - TSS region transcription start site region 61880
Tssr61881 6 87335707 to 87335724 17 - TSS region transcription start site region 61881
Tssr61882 6 87335727 to 87335756 29 - TSS region transcription start site region 61882
Tssr61883 6 87335758 to 87335769 11 - TSS region transcription start site region 61883
Gkn1 6 87345653 to 87350915 5262 - protein coding gene gastrokine 1
Tssr1923 6 87346196 to 87346203 7 - TSS region transcription start site region 1923
Tssr61884 6 87346348 to 87346367 19 - TSS region transcription start site region 61884
Tssr57535 6 87347066 to 87347071 5 + TSS region transcription start site region 57535
Tssr61885 6 87349043 to 87349073 30 - TSS region transcription start site region 61885
Tssr61886 6 87350904 to 87350921 17 - TSS region transcription start site region 61886
Tssr57536 6 87373357 to 87373370 13 + TSS region transcription start site region 57536
Gkn2 6 87373365 to 87379494 6129 + protein coding gene gastrokine 2
Tssr57537 6 87375750 to 87375768 18 + TSS region transcription start site region 57537
Tssr57538 6 87375788 to 87375796 8 + TSS region transcription start site region 57538
Tssr57539 6 87375808 to 87375822 14 + TSS region transcription start site region 57539
Tssr57540 6 87378127 to 87378141 14 + TSS region transcription start site region 57540
Tssr61887 6 87378237 to 87378275 38 - TSS region transcription start site region 61887
Tssr57541 6 87379285 to 87379292 7 + TSS region transcription start site region 57541
Tssr1924 6 87379350 to 87379356 6 + TSS region transcription start site region 1924
Tssr57542 6 87379363 to 87379374 11 + TSS region transcription start site region 57542
Tssr61888 6 87379464 to 87379499 35 - TSS region transcription start site region 61888
Gkn3 6 87383319 to 87388935 5616 - protein coding gene gastrokine 3
Tssr61889 6 87388846 to 87388862 16 - TSS region transcription start site region 61889
Tssr61890 6 87388878 to 87388892 14 - TSS region transcription start site region 61890
Skl3 6 87425898 to 87426034 136 QTL skeletal size (tail length) 3
D6Mit9 6 87425898 to 87426034 136 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 9
Egrm2 6 87425898 to 87426034 136 QTL early growth rate, maternal effect 2
Bits2 6 87425898 to 87426034 136 QTL bitterness sensitivity 2
Tssr57543 6 87428986 to 87429000 14 + TSS region transcription start site region 57543
Bmp10 6 87428994 to 87434512 5518 + protein coding gene bone morphogenetic protein 10
Tssr57544 6 87429076 to 87429087 11 + TSS region transcription start site region 57544
Tssr61891 6 87458097 to 87458123 26 - TSS region transcription start site region 61891
Tssr61892 6 87458246 to 87458259 13 - TSS region transcription start site region 61892
Arhgap25 6 87458545 to 87533259 74714 - protein coding gene Rho GTPase activating protein 25
Tssr61893 6 87459215 to 87459229 14 - TSS region transcription start site region 61893
Tssr61894 6 87459269 to 87459293 24 - TSS region transcription start site region 61894
Tssr61895 6 87459331 to 87459340 9 - TSS region transcription start site region 61895
Tssr61896 6 87459475 to 87459515 40 - TSS region transcription start site region 61896
Tssr61897 6 87467951 to 87467977 26 - TSS region transcription start site region 61897
Tssr61898 6 87483381 to 87483392 11 - TSS region transcription start site region 61898
Tssr61899 6 87491152 to 87491164 12 - TSS region transcription start site region 61899
Tssr61900 6 87496235 to 87496268 33 - TSS region transcription start site region 61900
Tssr61901 6 87496279 to 87496332 53 - TSS region transcription start site region 61901
Tssr57545 6 87496413 to 87496439 26 + TSS region transcription start site region 57545
Tssr61902 6 87496694 to 87496713 19 - TSS region transcription start site region 61902
Tssr61903 6 87502766 to 87502777 11 - TSS region transcription start site region 61903
Tssr61904 6 87503734 to 87503761 27 - TSS region transcription start site region 61904
Tssr61905 6 87508073 to 87508097 24 - TSS region transcription start site region 61905
Tssr61906 6 87511057 to 87511081 24 - TSS region transcription start site region 61906
Tssr61907 6 87511138 to 87511151 13 - TSS region transcription start site region 61907
Tssr61908 6 87511182 to 87511194 12 - TSS region transcription start site region 61908
Tssr61909 6 87512283 to 87512303 20 - TSS region transcription start site region 61909
Tssr61910 6 87517386 to 87517393 7 - TSS region transcription start site region 61910
D6Mit213 6 87531870 to 87532013 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 213
Tssr61911 6 87532113 to 87532135 22 - TSS region transcription start site region 61911
Tssr61912 6 87532239 to 87532254 15 - TSS region transcription start site region 61912
Tssr61913 6 87532270 to 87532319 49 - TSS region transcription start site region 61913
Tssr61914 6 87532338 to 87532368 30 - TSS region transcription start site region 61914
Tssr61915 6 87532394 to 87532414 20 - TSS region transcription start site region 61915
Tssr61916 6 87532642 to 87532649 7 - TSS region transcription start site region 61916
Tssr61917 6 87532956 to 87532965 9 - TSS region transcription start site region 61917
Tssr61918 6 87532976 to 87532998 22 - TSS region transcription start site region 61918
Tssr61919 6 87533001 to 87533038 37 - TSS region transcription start site region 61919
Tssr61920 6 87533219 to 87533264 45 - TSS region transcription start site region 61920
Tssr1925 6 87533303 to 87533334 31 - TSS region transcription start site region 1925
Gm44198 6 87533407 to 87536042 2635 + unclassified gene predicted gene, 44198
Tssr61921 6 87534917 to 87534932 15 - TSS region transcription start site region 61921
Prokr1 6 87578591 to 87590743 12152 - protein coding gene prokineticin receptor 1
Tssr61922 6 87579925 to 87579938 13 - TSS region transcription start site region 61922
Cpgi17676 6 87581243 to 87581892 649 CpG island CpG island 17676
Gm34222 6 87581853 to 87587796 5943 + lncRNA gene predicted gene, 34222
Cpgi17677 6 87590486 to 87591121 635 CpG island CpG island 17677
Tssr61923 6 87590708 to 87590748 40 - TSS region transcription start site region 61923
Gm34312 6 87597557 to 87598911 1354 + lincRNA gene predicted gene, 34312
Aplf 6 87628424 to 87672193 43769 - protein coding gene aprataxin and PNKP like factor
Gm46964 6 87636986 to 87639836 2850 + lncRNA gene predicted gene, 46964
Gm38852 6 87651089 to 87653700 2611 - lncRNA gene predicted gene, 38852
Tssr57546 6 87657748 to 87657759 11 + TSS region transcription start site region 57546
Gm44097 6 87657754 to 87663823 6069 + antisense lncRNA gene predicted gene, 44097
Tssr57547 6 87657777 to 87657784 7 + TSS region transcription start site region 57547
Cpgi17678 6 87671763 to 87672116 353 CpG island CpG island 17678
Tssr61924 6 87672121 to 87672138 17 - TSS region transcription start site region 61924
Tssr61925 6 87672142 to 87672179 37 - TSS region transcription start site region 61925
Tssr61926 6 87672190 to 87672202 12 - TSS region transcription start site region 61926
1810020O05Rik 6 87675593 to 87690847 15254 - lincRNA gene Riken cDNA 1810020O05 gene
E230015B07Rik 6 87675832 to 87681094 5262 + bidirectional promoter lncRNA gene RIKEN cDNA E230015B07 gene
Tssr61927 6 87690819 to 87690852 33 - TSS region transcription start site region 61927