Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:86679488-87019594

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snrnp27 6 86675169 to 86684491 9322 - protein coding gene small nuclear ribonucleoprotein 27 (U4/U6.U5)
Cpgi17668 6 86684136 to 86684687 551 CpG island CpG island 17668
Tssr61833 6 86684481 to 86684508 27 - TSS region transcription start site region 61833
Tssr61834 6 86684510 to 86684529 19 - TSS region transcription start site region 61834
Gm44214 6 86687823 to 86688428 605 - lincRNA gene predicted gene, 44214
Gmcl1 6 86691768 to 86733383 41615 - protein coding gene germ cell-less, spermatogenesis associated 1
Tssr61835 6 86704722 to 86704768 46 - TSS region transcription start site region 61835
Cpgi17669 6 86732511 to 86733922 1411 CpG island CpG island 17669
Tssr61836 6 86733218 to 86733256 38 - TSS region transcription start site region 61836
Tssr61837 6 86733268 to 86733394 126 - TSS region transcription start site region 61837
Gm44036 6 86733489 to 86737065 3576 + lincRNA gene predicted gene, 44036
Tssr57504 6 86733641 to 86733664 23 + TSS region transcription start site region 57504
Anxa4 6 86736840 to 86793584 56744 - protein coding gene annexin A4
Tssr61838 6 86737242 to 86737254 12 - TSS region transcription start site region 61838
Tssr61839 6 86737693 to 86737696 3 - TSS region transcription start site region 61839
Tssr61840 6 86737701 to 86737715 14 - TSS region transcription start site region 61840
Tssr61841 6 86737733 to 86737744 11 - TSS region transcription start site region 61841
Tssr61842 6 86737766 to 86737778 12 - TSS region transcription start site region 61842
Tssr61843 6 86741933 to 86741966 33 - TSS region transcription start site region 61843
Tssr61844 6 86743174 to 86743206 32 - TSS region transcription start site region 61844
Tssr57505 6 86748930 to 86748962 32 + TSS region transcription start site region 57505
Tssr61845 6 86753884 to 86753896 12 - TSS region transcription start site region 61845
Tssr61846 6 86754898 to 86754911 13 - TSS region transcription start site region 61846
Tssr61847 6 86761165 to 86761171 6 - TSS region transcription start site region 61847
Tssr61848 6 86761189 to 86761205 16 - TSS region transcription start site region 61848
Tssr61849 6 86765425 to 86765427 2 - TSS region transcription start site region 61849
Tssr1922 6 86765599 to 86765605 6 - TSS region transcription start site region 1922
Tssr61850 6 86765809 to 86765834 25 - TSS region transcription start site region 61850
Tssr61851 6 86765866 to 86765921 55 - TSS region transcription start site region 61851
Tssr61852 6 86772343 to 86772385 42 - TSS region transcription start site region 61852
Tssr61853 6 86775071 to 86775098 27 - TSS region transcription start site region 61853
Tssr61854 6 86775104 to 86775120 16 - TSS region transcription start site region 61854
Tssr61855 6 86775161 to 86775183 22 - TSS region transcription start site region 61855
Tssr61856 6 86780697 to 86780706 9 - TSS region transcription start site region 61856
Tssr61857 6 86780935 to 86780964 29 - TSS region transcription start site region 61857
Tssr61858 6 86781018 to 86781028 10 - TSS region transcription start site region 61858
Tssr61859 6 86783522 to 86783537 15 - TSS region transcription start site region 61859
Tssr57506 6 86785062 to 86785082 20 + TSS region transcription start site region 57506
Tssr57507 6 86785487 to 86785500 13 + TSS region transcription start site region 57507
Tssr61860 6 86785519 to 86785532 13 - TSS region transcription start site region 61860
Tssr61861 6 86785547 to 86785559 12 - TSS region transcription start site region 61861
Tssr61862 6 86787541 to 86787588 47 - TSS region transcription start site region 61862
Tssr61863 6 86790129 to 86790133 4 - TSS region transcription start site region 61863
Tssr57508 6 86790721 to 86790734 13 + TSS region transcription start site region 57508
Cpgi17670 6 86792932 to 86793873 941 CpG island CpG island 17670
Tssr61864 6 86793522 to 86793582 60 - TSS region transcription start site region 61864
Tssr61865 6 86793590 to 86793601 11 - TSS region transcription start site region 61865
Tssr61866 6 86795692 to 86795733 41 - TSS region transcription start site region 61866
Tssr61867 6 86796568 to 86796585 17 - TSS region transcription start site region 61867
D6Mit29 6 86806805 to 86806927 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 29
D6Dcr21 6 86806828 to 86806926 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 21
2610306M01Rik 6 86848407 to 86849440 1033 - bidirectional promoter lncRNA gene RIKEN cDNA 2610306M01 gene
Cpgi17671 6 86848645 to 86850315 1670 CpG island CpG island 17671
Tssr57509 6 86849266 to 86849335 69 + TSS region transcription start site region 57509
Tssr57510 6 86849443 to 86849454 11 + TSS region transcription start site region 57510
Tssr57511 6 86849488 to 86849594 106 + TSS region transcription start site region 57511
Aak1 6 86849517 to 87003223 153706 + protein coding gene AP2 associated kinase 1
Tssr57512 6 86850892 to 86850910 18 + TSS region transcription start site region 57512
Tssr57513 6 86850922 to 86850933 11 + TSS region transcription start site region 57513
Gm44153 6 86862873 to 86864452 1579 + unclassified gene predicted gene, 44153
Tssr57514 6 86864927 to 86864931 4 + TSS region transcription start site region 57514
Tssr57515 6 86870810 to 86870813 3 + TSS region transcription start site region 57515
Gm44152 6 86873786 to 86875476 1690 + unclassified gene predicted gene, 44152
D6Mit323 6 86899315 to 86899438 123 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 323
Tssr57516 6 86943243 to 86943251 8 + TSS region transcription start site region 57516
Tssr57517 6 86946858 to 86946881 23 + TSS region transcription start site region 57517
Tssr57518 6 86946919 to 86946942 23 + TSS region transcription start site region 57518
Tssr57519 6 86949538 to 86949563 25 + TSS region transcription start site region 57519
Tssr57520 6 86955143 to 86955180 37 + TSS region transcription start site region 57520
Tssr57521 6 86955223 to 86955230 7 + TSS region transcription start site region 57521
Gm44093 6 86961641 to 86963442 1801 + unclassified gene predicted gene, 44093
Gm44091 6 86976529 to 86977177 648 + sense intronic lncRNA gene predicted gene, 44091
Gm38495 6 86994977 to 87003227 8250 + protein coding gene predicted gene, 38495
Tssr57522 6 87009230 to 87009253 23 + TSS region transcription start site region 57522
Nfu1 6 87009291 to 87028461 19170 + protein coding gene NFU1 iron-sulfur cluster scaffold
Cpgi17672 6 87009712 to 87010340 628 CpG island CpG island 17672
Tssr57523 6 87009872 to 87009893 21 + TSS region transcription start site region 57523
Mnic2 6 113544602 to 86806805 -26737797 QTL macronutrient intake, carbohydrate 2