Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:86443671-89233792

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570 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6 6 4464884 to 87426034 82961150 QTL collagen induced arthritis QTL 6
Pgia19 6 45314059 to 87426034 42111975 QTL proteoglycan induced arthritis 19
Gm44790 6 86426658 to 86445630 18972 + protein coding gene predicted gene 44790
C87436 6 86437328 to 86470388 33060 + protein coding gene expressed sequence C87436
Tssr57473 6 86443804 to 86443817 13 + TSS region transcription start site region 57473
Tssr57474 6 86443819 to 86443863 44 + TSS region transcription start site region 57474
A430078I02Rik 6 86470277 to 86480830 10553 - antisense lncRNA gene RIKEN cDNA A430078I02 gene
Cpgi17665 6 86471827 to 86472838 1011 CpG island CpG island 17665
Tssr61793 6 86472164 to 86472175 11 - TSS region transcription start site region 61793
Tssr61794 6 86472182 to 86472228 46 - TSS region transcription start site region 61794
Tssr57475 6 86472766 to 86472809 43 + TSS region transcription start site region 57475
Tssr57476 6 86472817 to 86472831 14 + TSS region transcription start site region 57476
Gm38849 6 86472901 to 86473503 602 + lncRNA gene predicted gene, 38849
2310040G24Rik 6 86483376 to 86488227 4851 - lincRNA gene RIKEN cDNA 2310040G24 gene
Tssr61795 6 86484883 to 86484888 5 - TSS region transcription start site region 61795
Tssr57477 6 86487442 to 86487493 51 + TSS region transcription start site region 57477
Tssr57478 6 86487503 to 86487516 13 + TSS region transcription start site region 57478
Tssr61796 6 86487936 to 86487948 12 - TSS region transcription start site region 61796
Tssr61797 6 86488014 to 86488085 71 - TSS region transcription start site region 61797
Tssr61798 6 86488087 to 86488098 11 - TSS region transcription start site region 61798
Tssr61799 6 86488185 to 86488214 29 - TSS region transcription start site region 61799
Tssr61800 6 86488303 to 86488324 21 - TSS region transcription start site region 61800
Gm43936 6 86493216 to 86493909 693 - lincRNA gene predicted gene, 43936
Tssr61801 6 86493944 to 86493951 7 - TSS region transcription start site region 61801
Gm28720 6 86494649 to 86497804 3155 + lincRNA gene predicted gene 28720
Tssr61802 6 86497788 to 86497800 12 - TSS region transcription start site region 61802
Gm28719 6 86498781 to 86500537 1756 + lincRNA gene predicted gene 28719
Gm44386 6 86513891 to 86516273 2382 - lincRNA gene predicted gene, 44386
Tssr61803 6 86516176 to 86516209 33 - TSS region transcription start site region 61803
Tssr61804 6 86516220 to 86516240 20 - TSS region transcription start site region 61804
Tssr61805 6 86516254 to 86516276 22 - TSS region transcription start site region 61805
Tssr61806 6 86516283 to 86516296 13 - TSS region transcription start site region 61806
Pcbp1 6 86524494 to 86526171 1677 - protein coding gene poly(rC) binding protein 1
Cpgi17666 6 86524925 to 86527427 2502 CpG island CpG island 17666
Tssr57479 6 86525218 to 86525297 79 + TSS region transcription start site region 57479
Tssr61807 6 86525292 to 86525303 11 - TSS region transcription start site region 61807
Tssr57480 6 86525327 to 86525352 25 + TSS region transcription start site region 57480
Tssr57481 6 86525422 to 86525448 26 + TSS region transcription start site region 57481
Tssr61808 6 86525504 to 86525515 11 - TSS region transcription start site region 61808
Tssr57482 6 86525890 to 86525907 17 + TSS region transcription start site region 57482
Tssr61809 6 86525930 to 86525941 11 - TSS region transcription start site region 61809
Tssr61810 6 86525990 to 86526001 11 - TSS region transcription start site region 61810
Tssr61811 6 86526164 to 86526187 23 - TSS region transcription start site region 61811
Tssr61812 6 86526196 to 86526207 11 - TSS region transcription start site region 61812
Tssr57483 6 86526275 to 86526299 24 + TSS region transcription start site region 57483
Tssr61813 6 86526530 to 86526597 67 - TSS region transcription start site region 61813
Tssr57484 6 86526644 to 86526719 75 + TSS region transcription start site region 57484
Tssr57485 6 86526736 to 86526796 60 + TSS region transcription start site region 57485
Tssr57486 6 86527312 to 86527324 12 + TSS region transcription start site region 57486
1600020E01Rik 6 86527330 to 86564449 37119 + antisense lncRNA gene RIKEN cDNA 1600020E01 gene
Gm38676 6 86528764 to 86531209 2445 + lncRNA gene predicted gene, 38676
Tssr57487 6 86539708 to 86539712 4 + TSS region transcription start site region 57487
Tssr57488 6 86547957 to 86548007 50 + TSS region transcription start site region 57488
Tssr61814 6 86569418 to 86569441 23 - TSS region transcription start site region 61814
Tssr61815 6 86570831 to 86570845 14 - TSS region transcription start site region 61815
Tssr57489 6 86571108 to 86571122 14 + TSS region transcription start site region 57489
Tssr57490 6 86571136 to 86571152 16 + TSS region transcription start site region 57490
Gm22184 6 86574100 to 86574161 61 - miRNA gene predicted gene, 22184
Tssr57491 6 86578312 to 86578323 11 + TSS region transcription start site region 57491
Tssr61816 6 86585216 to 86585217 1 - TSS region transcription start site region 61816
Tssr61817 6 86585965 to 86585970 5 - TSS region transcription start site region 61817
Gm44369 6 86591430 to 86593604 2174 + unclassified gene predicted gene, 44369
Tssr61818 6 86594712 to 86594719 7 - TSS region transcription start site region 61818
Tssr57492 6 86594886 to 86594903 17 + TSS region transcription start site region 57492
Tssr1917 6 86600007 to 86600022 15 - TSS region transcription start site region 1917
Gm46963 6 86604421 to 86627858 23437 + protein coding gene predicted gene, 46963
Tssr1918 6 86605570 to 86605610 40 + TSS region transcription start site region 1918
Tssr61819 6 86607548 to 86607556 8 - TSS region transcription start site region 61819
Tssr61820 6 86607626 to 86607638 12 - TSS region transcription start site region 61820
Tssr61821 6 86607648 to 86607654 6 - TSS region transcription start site region 61821
Tssr61822 6 86607660 to 86607678 18 - TSS region transcription start site region 61822
Tssr61823 6 86607694 to 86607721 27 - TSS region transcription start site region 61823
Tssr1919 6 86607779 to 86607786 7 + TSS region transcription start site region 1919
Tssr57493 6 86607837 to 86607846 9 + TSS region transcription start site region 57493
Tssr61824 6 86609315 to 86609326 11 - TSS region transcription start site region 61824
Tssr61825 6 86609341 to 86609362 21 - TSS region transcription start site region 61825
Tssr57494 6 86609562 to 86609573 11 + TSS region transcription start site region 57494
Tssr57495 6 86612617 to 86612629 12 + TSS region transcription start site region 57495
Tssr1920 6 86615605 to 86615651 46 + TSS region transcription start site region 1920
Tssr1921 6 86616736 to 86616743 7 - TSS region transcription start site region 1921
Tssr61826 6 86620088 to 86620104 16 - TSS region transcription start site region 61826
Asprv1 6 86628174 to 86629710 1536 + protein coding gene aspartic peptidase, retroviral-like 1
Tssr57496 6 86628189 to 86628208 19 + TSS region transcription start site region 57496
Tssr57497 6 86628225 to 86628241 16 + TSS region transcription start site region 57497
Mxd1 6 86647042 to 86669161 22119 - protein coding gene MAX dimerization protein 1
Tssr61827 6 86649039 to 86649042 3 - TSS region transcription start site region 61827
Tssr61828 6 86649426 to 86649429 3 - TSS region transcription start site region 61828
Tssr61829 6 86649929 to 86649982 53 - TSS region transcription start site region 61829
Tssr61830 6 86650160 to 86650173 13 - TSS region transcription start site region 61830
Gm38850 6 86653954 to 86663064 9110 - lncRNA gene predicted gene, 38850
Gm44292 6 86663188 to 86665551 2363 - unclassified gene predicted gene, 44292
Cpgi17667 6 86668487 to 86669782 1295 CpG island CpG island 17667
Tssr57498 6 86668801 to 86668806 5 + TSS region transcription start site region 57498
Tssr57499 6 86668809 to 86668818 9 + TSS region transcription start site region 57499
Tssr57500 6 86668822 to 86668827 5 + TSS region transcription start site region 57500
Tssr57501 6 86668863 to 86668906 43 + TSS region transcription start site region 57501
Tssr57502 6 86668929 to 86668935 6 + TSS region transcription start site region 57502
Tssr61831 6 86669110 to 86669125 15 - TSS region transcription start site region 61831
Tssr61832 6 86669136 to 86669164 28 - TSS region transcription start site region 61832
Tssr57503 6 86669607 to 86669646 39 + TSS region transcription start site region 57503
Snrnp27 6 86675169 to 86684491 9322 - protein coding gene small nuclear ribonucleoprotein 27 (U4/U6.U5)
Cpgi17668 6 86684136 to 86684687 551 CpG island CpG island 17668
Tssr61833 6 86684481 to 86684508 27 - TSS region transcription start site region 61833
Tssr61834 6 86684510 to 86684529 19 - TSS region transcription start site region 61834
Gm44214 6 86687823 to 86688428 605 - lincRNA gene predicted gene, 44214
Gmcl1 6 86691768 to 86733383 41615 - protein coding gene germ cell-less, spermatogenesis associated 1
Tssr61835 6 86704722 to 86704768 46 - TSS region transcription start site region 61835
Cpgi17669 6 86732511 to 86733922 1411 CpG island CpG island 17669
Tssr61836 6 86733218 to 86733256 38 - TSS region transcription start site region 61836
Tssr61837 6 86733268 to 86733394 126 - TSS region transcription start site region 61837
Gm44036 6 86733489 to 86737065 3576 + lincRNA gene predicted gene, 44036
Tssr57504 6 86733641 to 86733664 23 + TSS region transcription start site region 57504
Anxa4 6 86736840 to 86793584 56744 - protein coding gene annexin A4
Tssr61838 6 86737242 to 86737254 12 - TSS region transcription start site region 61838
Tssr61839 6 86737693 to 86737696 3 - TSS region transcription start site region 61839
Tssr61840 6 86737701 to 86737715 14 - TSS region transcription start site region 61840
Tssr61841 6 86737733 to 86737744 11 - TSS region transcription start site region 61841
Tssr61842 6 86737766 to 86737778 12 - TSS region transcription start site region 61842
Tssr61843 6 86741933 to 86741966 33 - TSS region transcription start site region 61843
Tssr61844 6 86743174 to 86743206 32 - TSS region transcription start site region 61844
Tssr57505 6 86748930 to 86748962 32 + TSS region transcription start site region 57505
Tssr61845 6 86753884 to 86753896 12 - TSS region transcription start site region 61845
Tssr61846 6 86754898 to 86754911 13 - TSS region transcription start site region 61846
Tssr61847 6 86761165 to 86761171 6 - TSS region transcription start site region 61847
Tssr61848 6 86761189 to 86761205 16 - TSS region transcription start site region 61848
Tssr61849 6 86765425 to 86765427 2 - TSS region transcription start site region 61849
Tssr1922 6 86765599 to 86765605 6 - TSS region transcription start site region 1922
Tssr61850 6 86765809 to 86765834 25 - TSS region transcription start site region 61850
Tssr61851 6 86765866 to 86765921 55 - TSS region transcription start site region 61851
Tssr61852 6 86772343 to 86772385 42 - TSS region transcription start site region 61852
Tssr61853 6 86775071 to 86775098 27 - TSS region transcription start site region 61853
Tssr61854 6 86775104 to 86775120 16 - TSS region transcription start site region 61854
Tssr61855 6 86775161 to 86775183 22 - TSS region transcription start site region 61855
Tssr61856 6 86780697 to 86780706 9 - TSS region transcription start site region 61856
Tssr61857 6 86780935 to 86780964 29 - TSS region transcription start site region 61857
Tssr61858 6 86781018 to 86781028 10 - TSS region transcription start site region 61858
Tssr61859 6 86783522 to 86783537 15 - TSS region transcription start site region 61859
Tssr57506 6 86785062 to 86785082 20 + TSS region transcription start site region 57506
Tssr57507 6 86785487 to 86785500 13 + TSS region transcription start site region 57507
Tssr61860 6 86785519 to 86785532 13 - TSS region transcription start site region 61860
Tssr61861 6 86785547 to 86785559 12 - TSS region transcription start site region 61861
Tssr61862 6 86787541 to 86787588 47 - TSS region transcription start site region 61862
Tssr61863 6 86790129 to 86790133 4 - TSS region transcription start site region 61863
Tssr57508 6 86790721 to 86790734 13 + TSS region transcription start site region 57508
Cpgi17670 6 86792932 to 86793873 941 CpG island CpG island 17670
Tssr61864 6 86793522 to 86793582 60 - TSS region transcription start site region 61864
Tssr61865 6 86793590 to 86793601 11 - TSS region transcription start site region 61865
Tssr61866 6 86795692 to 86795733 41 - TSS region transcription start site region 61866
Tssr61867 6 86796568 to 86796585 17 - TSS region transcription start site region 61867
D6Mit29 6 86806805 to 86806927 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 29
D6Dcr21 6 86806828 to 86806926 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 21
2610306M01Rik 6 86848407 to 86849440 1033 - bidirectional promoter lncRNA gene RIKEN cDNA 2610306M01 gene
Cpgi17671 6 86848645 to 86850315 1670 CpG island CpG island 17671
Tssr57509 6 86849266 to 86849335 69 + TSS region transcription start site region 57509
Tssr57510 6 86849443 to 86849454 11 + TSS region transcription start site region 57510
Tssr57511 6 86849488 to 86849594 106 + TSS region transcription start site region 57511
Aak1 6 86849517 to 87003223 153706 + protein coding gene AP2 associated kinase 1
Tssr57512 6 86850892 to 86850910 18 + TSS region transcription start site region 57512
Tssr57513 6 86850922 to 86850933 11 + TSS region transcription start site region 57513
Gm44153 6 86862873 to 86864452 1579 + unclassified gene predicted gene, 44153
Tssr57514 6 86864927 to 86864931 4 + TSS region transcription start site region 57514
Tssr57515 6 86870810 to 86870813 3 + TSS region transcription start site region 57515
Gm44152 6 86873786 to 86875476 1690 + unclassified gene predicted gene, 44152
D6Mit323 6 86899315 to 86899438 123 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 323
Tssr57516 6 86943243 to 86943251 8 + TSS region transcription start site region 57516
Tssr57517 6 86946858 to 86946881 23 + TSS region transcription start site region 57517
Tssr57518 6 86946919 to 86946942 23 + TSS region transcription start site region 57518
Tssr57519 6 86949538 to 86949563 25 + TSS region transcription start site region 57519
Tssr57520 6 86955143 to 86955180 37 + TSS region transcription start site region 57520
Tssr57521 6 86955223 to 86955230 7 + TSS region transcription start site region 57521
Gm44093 6 86961641 to 86963442 1801 + unclassified gene predicted gene, 44093
Gm44091 6 86976529 to 86977177 648 + sense intronic lncRNA gene predicted gene, 44091
Gm38495 6 86994977 to 87003227 8250 + protein coding gene predicted gene, 38495
Tssr57522 6 87009230 to 87009253 23 + TSS region transcription start site region 57522
Nfu1 6 87009291 to 87028461 19170 + protein coding gene NFU1 iron-sulfur cluster scaffold
Cpgi17672 6 87009712 to 87010340 628 CpG island CpG island 17672
Tssr57523 6 87009872 to 87009893 21 + TSS region transcription start site region 57523
Tssr57524 6 87022996 to 87023009 13 + TSS region transcription start site region 57524
Tssr57525 6 87038504 to 87038524 20 + TSS region transcription start site region 57525
Cpgi17673 6 87042194 to 87043370 1176 CpG island CpG island 17673
Tssr57526 6 87042838 to 87042918 80 + TSS region transcription start site region 57526
Gfpt1 6 87042846 to 87092197 49351 + protein coding gene glutamine fructose-6-phosphate transaminase 1
Tssr57527 6 87069546 to 87069557 11 + TSS region transcription start site region 57527
Tssr57528 6 87073074 to 87073085 11 + TSS region transcription start site region 57528
Tssr57529 6 87073087 to 87073098 11 + TSS region transcription start site region 57529
Tssr57530 6 87093471 to 87093503 32 + TSS region transcription start site region 57530
Tssr57531 6 87104744 to 87104752 8 + TSS region transcription start site region 57531
D6Ertd527e 6 87104746 to 87112997 8251 + protein coding gene DNA segment, Chr 6, ERATO Doi 527, expressed
Gm40382 6 87127045 to 87132739 5694 - lncRNA gene predicted gene, 40382
Antxr1 6 87133853 to 87335809 201956 - protein coding gene anthrax toxin receptor 1
Tssr61868 6 87136504 to 87136516 12 - TSS region transcription start site region 61868
Gm44415 6 87138741 to 87140852 2111 - unclassified gene predicted gene, 44415
Gm44416 6 87171944 to 87174009 2065 - unclassified gene predicted gene, 44416
Tssr61869 6 87180766 to 87180768 2 - TSS region transcription start site region 61869
Tssr61870 6 87182653 to 87182665 12 - TSS region transcription start site region 61870
Tssr57532 6 87183485 to 87183491 6 + TSS region transcription start site region 57532
Tssr61871 6 87188231 to 87188243 12 - TSS region transcription start site region 61871
Gm38851 6 87221250 to 87267447 46197 + lncRNA gene predicted gene, 38851
Tssr61872 6 87228698 to 87228714 16 - TSS region transcription start site region 61872
Tssr61873 6 87228818 to 87228833 15 - TSS region transcription start site region 61873