Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:86005540-86725545

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax6 6 71322621 to 86275719 14953098 QTL ethanol induced ataxia 6
4930553P18Rik 6 86004385 to 86009354 4969 + lincRNA gene RIKEN cDNA 4930553P18 gene
Figla 6 86016494 to 86020996 4502 + protein coding gene folliculogenesis specific basic helix-loop-helix
Cpgi17656 6 86016986 to 86017520 534 CpG island CpG island 17656
Tssr57435 6 86017217 to 86017229 12 + TSS region transcription start site region 57435
Tssr57436 6 86017262 to 86017272 10 + TSS region transcription start site region 57436
Tssr57437 6 86017276 to 86017286 10 + TSS region transcription start site region 57437
Tssr57438 6 86019243 to 86019253 10 + TSS region transcription start site region 57438
Cpgi17657 6 86028569 to 86029449 880 CpG island CpG island 17657
Add2 6 86028681 to 86124409 95728 + protein coding gene adducin 2 (beta)
Tssr57439 6 86028692 to 86028709 17 + TSS region transcription start site region 57439
Tssr57440 6 86028720 to 86028738 18 + TSS region transcription start site region 57440
Tssr57441 6 86028753 to 86028768 15 + TSS region transcription start site region 57441
Tssr57442 6 86028803 to 86028814 11 + TSS region transcription start site region 57442
Tssr57443 6 86028821 to 86028826 5 + TSS region transcription start site region 57443
Tssr57444 6 86028834 to 86028839 5 + TSS region transcription start site region 57444
Tssr57445 6 86028853 to 86028862 9 + TSS region transcription start site region 57445
Tssr57446 6 86028875 to 86028880 5 + TSS region transcription start site region 57446
Gm44090 6 86039934 to 86041767 1833 + unclassified gene predicted gene, 44090
Tssr57447 6 86048357 to 86048360 3 + TSS region transcription start site region 57447
Tssr57448 6 86078037 to 86078063 26 + TSS region transcription start site region 57448
Tssr57449 6 86078070 to 86078089 19 + TSS region transcription start site region 57449
Gm44089 6 86084366 to 86087080 2714 - antisense lncRNA gene predicted gene, 44089
Tssr57450 6 86089685 to 86089688 3 + TSS region transcription start site region 57450
Tssr57451 6 86105188 to 86105192 4 + TSS region transcription start site region 57451
Tssr61787 6 86138433 to 86138434 1 - TSS region transcription start site region 61787
Gm19596 6 86147152 to 86148194 1042 + pseudogene predicted gene, 19596
Cpgi17658 6 86157084 to 86157455 371 CpG island CpG island 17658
Cpgi17659 6 86194741 to 86196296 1555 CpG island CpG island 17659
Tssr57452 6 86195081 to 86195092 11 + TSS region transcription start site region 57452
Tssr57453 6 86195214 to 86195241 27 + TSS region transcription start site region 57453
Tgfa 6 86195223 to 86275719 80496 + protein coding gene transforming growth factor alpha
Tssr57454 6 86195261 to 86195298 37 + TSS region transcription start site region 57454
Tssr57455 6 86195310 to 86195329 19 + TSS region transcription start site region 57455
Tssr57456 6 86195413 to 86195422 9 + TSS region transcription start site region 57456
Tssr57457 6 86195427 to 86195439 12 + TSS region transcription start site region 57457
Tssr57458 6 86195442 to 86195459 17 + TSS region transcription start site region 57458
Gm43917 6 86261555 to 86263914 2359 - unclassified gene predicted gene, 43917
Gm7545 6 86284887 to 86285894 1007 + pseudogene predicted gene 7545
Tssr57459 6 86334009 to 86334011 2 + TSS region transcription start site region 57459
Gm10443 6 86334031 to 86334240 209 + pseudogene predicted pseudogene 10443
Gm18862 6 86351851 to 86352984 1133 + pseudogene predicted gene, 18862
Cpgi17660 6 86365141 to 86366443 1302 CpG island CpG island 17660
Tssr61788 6 86365540 to 86365545 5 - TSS region transcription start site region 61788
Tssr57460 6 86365640 to 86365658 18 + TSS region transcription start site region 57460
Fam136a 6 86365646 to 86370058 4412 + protein coding gene family with sequence similarity 136, member A
Tssr57461 6 86365673 to 86365723 50 + TSS region transcription start site region 57461
Cpgi17661 6 86371290 to 86371934 644 CpG island CpG island 17661
Tssr61789 6 86371378 to 86371412 34 - TSS region transcription start site region 61789
Tssr57462 6 86371489 to 86371550 61 + TSS region transcription start site region 57462
Snrpg 6 86371540 to 86378902 7362 + protein coding gene small nuclear ribonucleoprotein polypeptide G
Gm44941 6 86372538 to 86375285 2747 - antisense lncRNA gene predicted gene 44941
Pcyox1 6 86386006 to 86397154 11148 - protein coding gene prenylcysteine oxidase 1
Tssr61790 6 86388696 to 86388716 20 - TSS region transcription start site region 61790
Cpgi17662 6 86396566 to 86397358 792 CpG island CpG island 17662
Tssr61791 6 86397098 to 86397150 52 - TSS region transcription start site region 61791
Cpgi17663 6 86403874 to 86404817 943 CpG island CpG island 17663
n-TGccc4 6 86403893 to 86403963 70 + tRNA gene nuclear encoded tRNA glycine 4 (anticodon CCC)
Tssr57463 6 86404191 to 86404198 7 + TSS region transcription start site region 57463
Tia1 6 86404219 to 86433405 29186 + protein coding gene cytotoxic granule-associated RNA binding protein 1
Tssr57464 6 86404220 to 86404240 20 + TSS region transcription start site region 57464
Tssr57465 6 86404257 to 86404319 62 + TSS region transcription start site region 57465
Tssr57466 6 86404341 to 86404380 39 + TSS region transcription start site region 57466
Tssr57467 6 86405877 to 86405882 5 + TSS region transcription start site region 57467
Gm44790 6 86426658 to 86445630 18972 + protein coding gene predicted gene 44790
C87436 6 86437328 to 86470388 33060 + protein coding gene expressed sequence C87436
Cpgi17664 6 86438090 to 86439163 1073 CpG island CpG island 17664
Tssr57468 6 86438360 to 86438405 45 + TSS region transcription start site region 57468
Tssr57469 6 86438415 to 86438431 16 + TSS region transcription start site region 57469
Tssr61792 6 86438618 to 86438636 18 - TSS region transcription start site region 61792
Tssr57470 6 86438666 to 86438713 47 + TSS region transcription start site region 57470
Tssr57471 6 86438714 to 86438727 13 + TSS region transcription start site region 57471
Tssr57472 6 86438748 to 86438758 10 + TSS region transcription start site region 57472
Tssr57473 6 86443804 to 86443817 13 + TSS region transcription start site region 57473
Tssr57474 6 86443819 to 86443863 44 + TSS region transcription start site region 57474
A430078I02Rik 6 86470277 to 86480830 10553 - antisense lncRNA gene RIKEN cDNA A430078I02 gene
Cpgi17665 6 86471827 to 86472838 1011 CpG island CpG island 17665
Tssr61793 6 86472164 to 86472175 11 - TSS region transcription start site region 61793
Tssr61794 6 86472182 to 86472228 46 - TSS region transcription start site region 61794
Tssr57475 6 86472766 to 86472809 43 + TSS region transcription start site region 57475
Tssr57476 6 86472817 to 86472831 14 + TSS region transcription start site region 57476
Gm38849 6 86472901 to 86473503 602 + lncRNA gene predicted gene, 38849
2310040G24Rik 6 86483376 to 86488227 4851 - lincRNA gene RIKEN cDNA 2310040G24 gene
Tssr61795 6 86484883 to 86484888 5 - TSS region transcription start site region 61795
Tssr57477 6 86487442 to 86487493 51 + TSS region transcription start site region 57477
Tssr57478 6 86487503 to 86487516 13 + TSS region transcription start site region 57478
Tssr61796 6 86487936 to 86487948 12 - TSS region transcription start site region 61796
Tssr61797 6 86488014 to 86488085 71 - TSS region transcription start site region 61797
Tssr61798 6 86488087 to 86488098 11 - TSS region transcription start site region 61798
Tssr61799 6 86488185 to 86488214 29 - TSS region transcription start site region 61799
Tssr61800 6 86488303 to 86488324 21 - TSS region transcription start site region 61800
Gm43936 6 86493216 to 86493909 693 - lincRNA gene predicted gene, 43936
Tssr61801 6 86493944 to 86493951 7 - TSS region transcription start site region 61801
Gm28720 6 86494649 to 86497804 3155 + lincRNA gene predicted gene 28720
Tssr61802 6 86497788 to 86497800 12 - TSS region transcription start site region 61802
Gm28719 6 86498781 to 86500537 1756 + lincRNA gene predicted gene 28719
Gm44386 6 86513891 to 86516273 2382 - lincRNA gene predicted gene, 44386
Tssr61803 6 86516176 to 86516209 33 - TSS region transcription start site region 61803
Tssr61804 6 86516220 to 86516240 20 - TSS region transcription start site region 61804
Tssr61805 6 86516254 to 86516276 22 - TSS region transcription start site region 61805
Tssr61806 6 86516283 to 86516296 13 - TSS region transcription start site region 61806
Pcbp1 6 86524494 to 86526171 1677 - protein coding gene poly(rC) binding protein 1
Cpgi17666 6 86524925 to 86527427 2502 CpG island CpG island 17666
Tssr57479 6 86525218 to 86525297 79 + TSS region transcription start site region 57479
Tssr61807 6 86525292 to 86525303 11 - TSS region transcription start site region 61807
Tssr57480 6 86525327 to 86525352 25 + TSS region transcription start site region 57480
Tssr57481 6 86525422 to 86525448 26 + TSS region transcription start site region 57481
Tssr61808 6 86525504 to 86525515 11 - TSS region transcription start site region 61808
Tssr57482 6 86525890 to 86525907 17 + TSS region transcription start site region 57482
Tssr61809 6 86525930 to 86525941 11 - TSS region transcription start site region 61809
Tssr61810 6 86525990 to 86526001 11 - TSS region transcription start site region 61810
Tssr61811 6 86526164 to 86526187 23 - TSS region transcription start site region 61811
Tssr61812 6 86526196 to 86526207 11 - TSS region transcription start site region 61812
Tssr57483 6 86526275 to 86526299 24 + TSS region transcription start site region 57483
Tssr61813 6 86526530 to 86526597 67 - TSS region transcription start site region 61813
Tssr57484 6 86526644 to 86526719 75 + TSS region transcription start site region 57484
Tssr57485 6 86526736 to 86526796 60 + TSS region transcription start site region 57485
Tssr57486 6 86527312 to 86527324 12 + TSS region transcription start site region 57486
1600020E01Rik 6 86527330 to 86564449 37119 + antisense lncRNA gene RIKEN cDNA 1600020E01 gene
Gm38676 6 86528764 to 86531209 2445 + lncRNA gene predicted gene, 38676
Tssr57487 6 86539708 to 86539712 4 + TSS region transcription start site region 57487
Tssr57488 6 86547957 to 86548007 50 + TSS region transcription start site region 57488
Tssr61814 6 86569418 to 86569441 23 - TSS region transcription start site region 61814
Tssr61815 6 86570831 to 86570845 14 - TSS region transcription start site region 61815
Tssr57489 6 86571108 to 86571122 14 + TSS region transcription start site region 57489
Tssr57490 6 86571136 to 86571152 16 + TSS region transcription start site region 57490
Gm22184 6 86574100 to 86574161 61 - miRNA gene predicted gene, 22184
Tssr57491 6 86578312 to 86578323 11 + TSS region transcription start site region 57491
Tssr61816 6 86585216 to 86585217 1 - TSS region transcription start site region 61816
Tssr61817 6 86585965 to 86585970 5 - TSS region transcription start site region 61817
Gm44369 6 86591430 to 86593604 2174 + unclassified gene predicted gene, 44369
Tssr61818 6 86594712 to 86594719 7 - TSS region transcription start site region 61818
Tssr57492 6 86594886 to 86594903 17 + TSS region transcription start site region 57492
Tssr1917 6 86600007 to 86600022 15 - TSS region transcription start site region 1917
Gm46963 6 86604421 to 86627858 23437 + protein coding gene predicted gene, 46963
Tssr1918 6 86605570 to 86605610 40 + TSS region transcription start site region 1918
Tssr61819 6 86607548 to 86607556 8 - TSS region transcription start site region 61819
Tssr61820 6 86607626 to 86607638 12 - TSS region transcription start site region 61820
Tssr61821 6 86607648 to 86607654 6 - TSS region transcription start site region 61821
Tssr61822 6 86607660 to 86607678 18 - TSS region transcription start site region 61822
Tssr61823 6 86607694 to 86607721 27 - TSS region transcription start site region 61823
Tssr1919 6 86607779 to 86607786 7 + TSS region transcription start site region 1919
Tssr57493 6 86607837 to 86607846 9 + TSS region transcription start site region 57493
Tssr61824 6 86609315 to 86609326 11 - TSS region transcription start site region 61824
Tssr61825 6 86609341 to 86609362 21 - TSS region transcription start site region 61825
Tssr57494 6 86609562 to 86609573 11 + TSS region transcription start site region 57494
Tssr57495 6 86612617 to 86612629 12 + TSS region transcription start site region 57495
Tssr1920 6 86615605 to 86615651 46 + TSS region transcription start site region 1920
Tssr1921 6 86616736 to 86616743 7 - TSS region transcription start site region 1921
Tssr61826 6 86620088 to 86620104 16 - TSS region transcription start site region 61826
Asprv1 6 86628174 to 86629710 1536 + protein coding gene aspartic peptidase, retroviral-like 1
Tssr57496 6 86628189 to 86628208 19 + TSS region transcription start site region 57496
Tssr57497 6 86628225 to 86628241 16 + TSS region transcription start site region 57497
Mxd1 6 86647042 to 86669161 22119 - protein coding gene MAX dimerization protein 1
Tssr61827 6 86649039 to 86649042 3 - TSS region transcription start site region 61827
Tssr61828 6 86649426 to 86649429 3 - TSS region transcription start site region 61828
Tssr61829 6 86649929 to 86649982 53 - TSS region transcription start site region 61829
Tssr61830 6 86650160 to 86650173 13 - TSS region transcription start site region 61830
Gm38850 6 86653954 to 86663064 9110 - lncRNA gene predicted gene, 38850
Gm44292 6 86663188 to 86665551 2363 - unclassified gene predicted gene, 44292
Cpgi17667 6 86668487 to 86669782 1295 CpG island CpG island 17667
Tssr57498 6 86668801 to 86668806 5 + TSS region transcription start site region 57498
Tssr57499 6 86668809 to 86668818 9 + TSS region transcription start site region 57499
Tssr57500 6 86668822 to 86668827 5 + TSS region transcription start site region 57500
Tssr57501 6 86668863 to 86668906 43 + TSS region transcription start site region 57501
Tssr57502 6 86668929 to 86668935 6 + TSS region transcription start site region 57502
Tssr61831 6 86669110 to 86669125 15 - TSS region transcription start site region 61831
Tssr61832 6 86669136 to 86669164 28 - TSS region transcription start site region 61832
Tssr57503 6 86669607 to 86669646 39 + TSS region transcription start site region 57503
Snrnp27 6 86675169 to 86684491 9322 - protein coding gene small nuclear ribonucleoprotein 27 (U4/U6.U5)
Cpgi17668 6 86684136 to 86684687 551 CpG island CpG island 17668
Tssr61833 6 86684481 to 86684508 27 - TSS region transcription start site region 61833
Tssr61834 6 86684510 to 86684529 19 - TSS region transcription start site region 61834
Gm44214 6 86687823 to 86688428 605 - lincRNA gene predicted gene, 44214
Gmcl1 6 86691768 to 86733383 41615 - protein coding gene germ cell-less, spermatogenesis associated 1
Tssr61835 6 86704722 to 86704768 46 - TSS region transcription start site region 61835