Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:85186919-88706942

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693 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6 6 4464884 to 87426034 82961150 QTL collagen induced arthritis QTL 6
Pgia19 6 45314059 to 87426034 42111975 QTL proteoglycan induced arthritis 19
Etax6 6 71322621 to 86275719 14953098 QTL ethanol induced ataxia 6
Cpgi17636 6 85186546 to 85187036 490 CpG island CpG island 17636
Cpgi17637 6 85187151 to 85188834 1683 CpG island CpG island 17637
Tssr57410 6 85187497 to 85187510 13 + TSS region transcription start site region 57410
Tssr57411 6 85187511 to 85187523 12 + TSS region transcription start site region 57411
Tssr57412 6 85187526 to 85187569 43 + TSS region transcription start site region 57412
Emx1 6 85187931 to 85204463 16532 + protein coding gene empty spiracles homeobox 1
Cpgi17638 6 85189940 to 85190900 960 CpG island CpG island 17638
Cpgi17639 6 85193930 to 85194273 343 CpG island CpG island 17639
Sfxn5 6 85213049 to 85333422 120373 - protein coding gene sideroflexin 5
Tssr61743 6 85213900 to 85213906 6 - TSS region transcription start site region 61743
Cpgi17640 6 85223927 to 85224097 170 CpG island CpG island 17640
D930014O13Rik 6 85243862 to 85246656 2794 unclassified gene RIKEN cDNA D930014O13 gene
D6Mit391 6 85277319 to 85277419 100 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 391
D6Mit6 6 85277319 to 85277417 98 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 6
Tssr57413 6 85298490 to 85298495 5 + TSS region transcription start site region 57413
Cpgi17641 6 85332367 to 85334019 1652 CpG island CpG island 17641
Tssr57414 6 85332564 to 85332566 2 + TSS region transcription start site region 57414
Tssr61744 6 85333412 to 85333441 29 - TSS region transcription start site region 61744
Tssr61745 6 85333478 to 85333489 11 - TSS region transcription start site region 61745
Rab11fip5 6 85334962 to 85374634 39672 - protein coding gene RAB11 family interacting protein 5 (class I)
Mir705 6 85336292 to 85336373 81 - miRNA gene microRNA 705
Tssr61746 6 85370098 to 85370109 11 - TSS region transcription start site region 61746
Cpgi17642 6 85373879 to 85375206 1327 CpG island CpG island 17642
Tssr1914 6 85374424 to 85374445 21 - TSS region transcription start site region 1914
Tssr61747 6 85374542 to 85374553 11 - TSS region transcription start site region 61747
Tssr61748 6 85374574 to 85374579 5 - TSS region transcription start site region 61748
Tssr61749 6 85374583 to 85374592 9 - TSS region transcription start site region 61749
Tssr61750 6 85374606 to 85374664 58 - TSS region transcription start site region 61750
Tssr61751 6 85374679 to 85374704 25 - TSS region transcription start site region 61751
Cpgi17643 6 85409104 to 85409442 338 CpG island CpG island 17643
Noto 6 85423886 to 85428877 4991 + protein coding gene notochord homeobox
Cpgi17644 6 85423985 to 85424381 396 CpG island CpG island 17644
Cpgi17645 6 85431764 to 85432433 669 CpG island CpG island 17645
Tssr57415 6 85431970 to 85432010 40 + TSS region transcription start site region 57415
Smyd5 6 85431989 to 85446435 14446 + protein coding gene SET and MYND domain containing 5
Tssr57416 6 85432011 to 85432045 34 + TSS region transcription start site region 57416
Tssr57417 6 85441705 to 85441716 11 + TSS region transcription start site region 57417
Pradc1 6 85446810 to 85451970 5160 - protein coding gene protease-associated domain containing 1
Cpgi17646 6 85450751 to 85452647 1896 CpG island CpG island 17646
Tssr61752 6 85451221 to 85451325 104 - TSS region transcription start site region 61752
Tssr57418 6 85451488 to 85451502 14 + TSS region transcription start site region 57418
Cct7 6 85451514 to 85468475 16961 + protein coding gene chaperonin containing Tcp1, subunit 7 (eta)
Tssr61753 6 85451829 to 85451843 14 - TSS region transcription start site region 61753
Tssr61754 6 85451863 to 85451892 29 - TSS region transcription start site region 61754
Tssr61755 6 85451955 to 85451990 35 - TSS region transcription start site region 61755
Tssr57419 6 85451983 to 85452003 20 + TSS region transcription start site region 57419
Tssr57420 6 85452005 to 85452026 21 + TSS region transcription start site region 57420
Tssr57421 6 85452041 to 85452087 46 + TSS region transcription start site region 57421
Tssr57422 6 85459191 to 85459233 42 + TSS region transcription start site region 57422
Tssr57423 6 85464875 to 85464883 8 + TSS region transcription start site region 57423
Fbxo41 6 85469574 to 85502994 33420 - protein coding gene F-box protein 41
Tssr1915 6 85475656 to 85475659 3 - TSS region transcription start site region 1915
Cpgi17647 6 85483702 to 85485006 1304 CpG island CpG island 17647
Cpgi17648 6 85502541 to 85503271 730 CpG island CpG island 17648
Tssr61756 6 85502928 to 85502965 37 - TSS region transcription start site region 61756
Tssr61757 6 85502980 to 85503034 54 - TSS region transcription start site region 61757
Egr4 6 85511122 to 85513542 2420 - protein coding gene early growth response 4
Cpgi17649 6 85511282 to 85514106 2824 CpG island CpG island 17649
Tssr61758 6 85513291 to 85513292 1 - TSS region transcription start site region 61758
Tssr61759 6 85513586 to 85513591 5 - TSS region transcription start site region 61759
Gm44023 6 85529452 to 85529920 468 + pseudogene predicted gene, 44023
Cpgi17650 6 85587289 to 85588253 964 CpG island CpG island 17650
Tssr57424 6 85587505 to 85587516 11 + TSS region transcription start site region 57424
Tssr57425 6 85587524 to 85587544 20 + TSS region transcription start site region 57425
Alms1 6 85587531 to 85702753 115222 + protein coding gene ALMS1, centrosome and basal body associated
Tssr57426 6 85587562 to 85587573 11 + TSS region transcription start site region 57426
Tssr57427 6 85587591 to 85587630 39 + TSS region transcription start site region 57427
Gm43588 6 85632864 to 85635161 2297 + unclassified gene predicted gene 43588
Gm42600 6 85679277 to 85682864 3587 + unclassified gene predicted gene 42600
Nat8f7 6 85706707 to 85709212 2505 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 7
Alms1-ps1 6 85721925 to 85756526 34601 + pseudogene ALMS1, centrosome and basal body associated, pseudogene 1
Gm27317 6 85743515 to 85743609 94 - miRNA gene predicted gene, 27317
Nat8f3 6 85760631 to 85765744 5113 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 3
Mir6375 6 85790140 to 85790234 94 - miRNA gene microRNA 6375
Alms1-ps2 6 85792117 to 85804057 11940 + pseudogene ALMS1, centrosome and basal body associated, pseudogene 2
Nat8f6 6 85808044 to 85809877 1833 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 6
Nat8f5 6 85817218 to 85820972 3754 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 5
Tssr61760 6 85820936 to 85820962 26 - TSS region transcription start site region 61760
Tssr61761 6 85820965 to 85820977 12 - TSS region transcription start site region 61761
Tssr61762 6 85820981 to 85820990 9 - TSS region transcription start site region 61762
Tssr61763 6 85821001 to 85821007 6 - TSS region transcription start site region 61763
Nat8 6 85830388 to 85832082 1694 - protein coding gene N-acetyltransferase 8 (GCN5-related)
Tssr61764 6 85831825 to 85831859 34 - TSS region transcription start site region 61764
Tssr61765 6 85832219 to 85832232 13 - TSS region transcription start site region 61765
Tssr61766 6 85832239 to 85832263 24 - TSS region transcription start site region 61766
Tssr1916 6 85832269 to 85832281 12 - TSS region transcription start site region 1916
Ptges3-ps 6 85843980 to 85844459 479 + pseudogene prostaglandin E synthase 3, pseudogene
Gm38847 6 85856311 to 85861133 4822 + lncRNA gene predicted gene, 38847
Nat8f2 6 85865422 to 85869137 3715 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 2
Tssr61767 6 85865808 to 85865810 2 - TSS region transcription start site region 61767
Tssr61768 6 85865882 to 85865894 12 - TSS region transcription start site region 61768
Tssr61769 6 85867424 to 85867435 11 - TSS region transcription start site region 61769
Tssr61770 6 85869056 to 85869067 11 - TSS region transcription start site region 61770
Tssr61771 6 85869082 to 85869100 18 - TSS region transcription start site region 61771
Tssr61772 6 85869107 to 85869123 16 - TSS region transcription start site region 61772
Tssr61773 6 85869128 to 85869143 15 - TSS region transcription start site region 61773
Tssr57428 6 85889309 to 85889311 2 + TSS region transcription start site region 57428
Gm43309 6 85889326 to 85889961 635 + pseudogene predicted gene 43309
Cpgi17651 6 85895402 to 85895555 153 CpG island CpG island 17651
Nat8f4 6 85899051 to 85904884 5833 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 4
Tssr61774 6 85902246 to 85902276 30 - TSS region transcription start site region 61774
Tssr61775 6 85902528 to 85902538 10 - TSS region transcription start site region 61775
Cpgi17652 6 85904854 to 85905052 198 CpG island CpG island 17652
Nat8f1 6 85910154 to 85915677 5523 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 1
Tssr57429 6 85911854 to 85911865 11 + TSS region transcription start site region 57429
Tprkb 6 85911865 to 85930284 18419 + protein coding gene Tp53rk binding protein
Tssr57430 6 85911867 to 85911885 18 + TSS region transcription start site region 57430
Cpgi17653 6 85915591 to 85916489 898 CpG island CpG island 17653
Tssr61776 6 85915618 to 85915640 22 - TSS region transcription start site region 61776
Tssr61777 6 85915653 to 85915692 39 - TSS region transcription start site region 61777
Tssr57431 6 85915709 to 85915770 61 + TSS region transcription start site region 57431
Tssr57432 6 85915787 to 85915798 11 + TSS region transcription start site region 57432
Gm18290 6 85920629 to 85921380 751 - pseudogene predicted gene, 18290
Nat8b-ps 6 85932681 to 85933379 698 - pseudogene N-acetyltransferase 8B, pseudogene
Cpgi17654 6 85936668 to 85937359 691 CpG island CpG island 17654
Gm7542 6 85938443 to 85939217 774 + pseudogene predicted gene 7542
Dusp11 6 85942268 to 85961667 19399 - protein coding gene dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
Tssr61778 6 85945962 to 85945976 14 - TSS region transcription start site region 61778
Tssr61779 6 85957032 to 85957037 5 - TSS region transcription start site region 61779
Cpgi17655 6 85960978 to 85961982 1004 CpG island CpG island 17655
Tssr61780 6 85961597 to 85961598 1 - TSS region transcription start site region 61780
Tssr61781 6 85961603 to 85961627 24 - TSS region transcription start site region 61781
Gm19265 6 85961623 to 86001926 40303 + antisense lncRNA gene predicted gene, 19265
Tssr61782 6 85961631 to 85961671 40 - TSS region transcription start site region 61782
Tssr61783 6 85961672 to 85961683 11 - TSS region transcription start site region 61783
Tssr57433 6 85961715 to 85961760 45 + TSS region transcription start site region 57433
Tssr61784 6 85961961 to 85961974 13 - TSS region transcription start site region 61784
Gm33319 6 85989006 to 86003497 14491 - lncRNA gene predicted gene, 33319
Tssr61785 6 86003576 to 86003588 12 - TSS region transcription start site region 61785
Tssr61786 6 86003595 to 86003625 30 - TSS region transcription start site region 61786
Tssr57434 6 86004352 to 86004354 2 + TSS region transcription start site region 57434
4930553P18Rik 6 86004385 to 86009354 4969 + lincRNA gene RIKEN cDNA 4930553P18 gene
Figla 6 86016494 to 86020996 4502 + protein coding gene folliculogenesis specific basic helix-loop-helix
Cpgi17656 6 86016986 to 86017520 534 CpG island CpG island 17656
Tssr57435 6 86017217 to 86017229 12 + TSS region transcription start site region 57435
Tssr57436 6 86017262 to 86017272 10 + TSS region transcription start site region 57436
Tssr57437 6 86017276 to 86017286 10 + TSS region transcription start site region 57437
Tssr57438 6 86019243 to 86019253 10 + TSS region transcription start site region 57438
Cpgi17657 6 86028569 to 86029449 880 CpG island CpG island 17657
Add2 6 86028681 to 86124409 95728 + protein coding gene adducin 2 (beta)
Tssr57439 6 86028692 to 86028709 17 + TSS region transcription start site region 57439
Tssr57440 6 86028720 to 86028738 18 + TSS region transcription start site region 57440
Tssr57441 6 86028753 to 86028768 15 + TSS region transcription start site region 57441
Tssr57442 6 86028803 to 86028814 11 + TSS region transcription start site region 57442
Tssr57443 6 86028821 to 86028826 5 + TSS region transcription start site region 57443
Tssr57444 6 86028834 to 86028839 5 + TSS region transcription start site region 57444
Tssr57445 6 86028853 to 86028862 9 + TSS region transcription start site region 57445
Tssr57446 6 86028875 to 86028880 5 + TSS region transcription start site region 57446
Gm44090 6 86039934 to 86041767 1833 + unclassified gene predicted gene, 44090
Tssr57447 6 86048357 to 86048360 3 + TSS region transcription start site region 57447
Tssr57448 6 86078037 to 86078063 26 + TSS region transcription start site region 57448
Tssr57449 6 86078070 to 86078089 19 + TSS region transcription start site region 57449
Gm44089 6 86084366 to 86087080 2714 - antisense lncRNA gene predicted gene, 44089
Tssr57450 6 86089685 to 86089688 3 + TSS region transcription start site region 57450
Tssr57451 6 86105188 to 86105192 4 + TSS region transcription start site region 57451
Tssr61787 6 86138433 to 86138434 1 - TSS region transcription start site region 61787
Gm19596 6 86147152 to 86148194 1042 + pseudogene predicted gene, 19596
Cpgi17658 6 86157084 to 86157455 371 CpG island CpG island 17658
Cpgi17659 6 86194741 to 86196296 1555 CpG island CpG island 17659
Tssr57452 6 86195081 to 86195092 11 + TSS region transcription start site region 57452
Tssr57453 6 86195214 to 86195241 27 + TSS region transcription start site region 57453
Tgfa 6 86195223 to 86275719 80496 + protein coding gene transforming growth factor alpha
Tssr57454 6 86195261 to 86195298 37 + TSS region transcription start site region 57454
Tssr57455 6 86195310 to 86195329 19 + TSS region transcription start site region 57455
Tssr57456 6 86195413 to 86195422 9 + TSS region transcription start site region 57456
Tssr57457 6 86195427 to 86195439 12 + TSS region transcription start site region 57457
Tssr57458 6 86195442 to 86195459 17 + TSS region transcription start site region 57458
Gm43917 6 86261555 to 86263914 2359 - unclassified gene predicted gene, 43917
Gm7545 6 86284887 to 86285894 1007 + pseudogene predicted gene 7545
Tssr57459 6 86334009 to 86334011 2 + TSS region transcription start site region 57459
Gm10443 6 86334031 to 86334240 209 + pseudogene predicted pseudogene 10443
Gm18862 6 86351851 to 86352984 1133 + pseudogene predicted gene, 18862
Cpgi17660 6 86365141 to 86366443 1302 CpG island CpG island 17660
Tssr61788 6 86365540 to 86365545 5 - TSS region transcription start site region 61788
Tssr57460 6 86365640 to 86365658 18 + TSS region transcription start site region 57460
Fam136a 6 86365646 to 86370058 4412 + protein coding gene family with sequence similarity 136, member A
Tssr57461 6 86365673 to 86365723 50 + TSS region transcription start site region 57461
Cpgi17661 6 86371290 to 86371934 644 CpG island CpG island 17661
Tssr61789 6 86371378 to 86371412 34 - TSS region transcription start site region 61789
Tssr57462 6 86371489 to 86371550 61 + TSS region transcription start site region 57462
Snrpg 6 86371540 to 86378902 7362 + protein coding gene small nuclear ribonucleoprotein polypeptide G
Gm44941 6 86372538 to 86375285 2747 - antisense lncRNA gene predicted gene 44941
Pcyox1 6 86386006 to 86397154 11148 - protein coding gene prenylcysteine oxidase 1
Tssr61790 6 86388696 to 86388716 20 - TSS region transcription start site region 61790
Cpgi17662 6 86396566 to 86397358 792 CpG island CpG island 17662
Tssr61791 6 86397098 to 86397150 52 - TSS region transcription start site region 61791
Cpgi17663 6 86403874 to 86404817 943 CpG island CpG island 17663
n-TGccc4 6 86403893 to 86403963 70 + tRNA gene nuclear encoded tRNA glycine 4 (anticodon CCC)
Tssr57463 6 86404191 to 86404198 7 + TSS region transcription start site region 57463
Tia1 6 86404219 to 86433405 29186 + protein coding gene cytotoxic granule-associated RNA binding protein 1
Tssr57464 6 86404220 to 86404240 20 + TSS region transcription start site region 57464
Tssr57465 6 86404257 to 86404319 62 + TSS region transcription start site region 57465
Tssr57466 6 86404341 to 86404380 39 + TSS region transcription start site region 57466
Tssr57467 6 86405877 to 86405882 5 + TSS region transcription start site region 57467
Gm44790 6 86426658 to 86445630 18972 + protein coding gene predicted gene 44790
C87436 6 86437328 to 86470388 33060 + protein coding gene expressed sequence C87436
Cpgi17664 6 86438090 to 86439163 1073 CpG island CpG island 17664