Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:85159574-85812994

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33200 6 85165835 to 85167374 1539 + lncRNA gene predicted gene, 33200
Cpgi17635 6 85185931 to 85186370 439 CpG island CpG island 17635
Cpgi17636 6 85186546 to 85187036 490 CpG island CpG island 17636
Cpgi17637 6 85187151 to 85188834 1683 CpG island CpG island 17637
Tssr57410 6 85187497 to 85187510 13 + TSS region transcription start site region 57410
Tssr57411 6 85187511 to 85187523 12 + TSS region transcription start site region 57411
Tssr57412 6 85187526 to 85187569 43 + TSS region transcription start site region 57412
Emx1 6 85187931 to 85204463 16532 + protein coding gene empty spiracles homeobox 1
Cpgi17638 6 85189940 to 85190900 960 CpG island CpG island 17638
Cpgi17639 6 85193930 to 85194273 343 CpG island CpG island 17639
Sfxn5 6 85213049 to 85333422 120373 - protein coding gene sideroflexin 5
Tssr61743 6 85213900 to 85213906 6 - TSS region transcription start site region 61743
Cpgi17640 6 85223927 to 85224097 170 CpG island CpG island 17640
D930014O13Rik 6 85243862 to 85246656 2794 unclassified gene RIKEN cDNA D930014O13 gene
D6Mit391 6 85277319 to 85277419 100 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 391
D6Mit6 6 85277319 to 85277417 98 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 6
Tssr57413 6 85298490 to 85298495 5 + TSS region transcription start site region 57413
Cpgi17641 6 85332367 to 85334019 1652 CpG island CpG island 17641
Tssr57414 6 85332564 to 85332566 2 + TSS region transcription start site region 57414
Tssr61744 6 85333412 to 85333441 29 - TSS region transcription start site region 61744
Tssr61745 6 85333478 to 85333489 11 - TSS region transcription start site region 61745
Rab11fip5 6 85334962 to 85374634 39672 - protein coding gene RAB11 family interacting protein 5 (class I)
Mir705 6 85336292 to 85336373 81 - miRNA gene microRNA 705
Tssr61746 6 85370098 to 85370109 11 - TSS region transcription start site region 61746
Cpgi17642 6 85373879 to 85375206 1327 CpG island CpG island 17642
Tssr1914 6 85374424 to 85374445 21 - TSS region transcription start site region 1914
Tssr61747 6 85374542 to 85374553 11 - TSS region transcription start site region 61747
Tssr61748 6 85374574 to 85374579 5 - TSS region transcription start site region 61748
Tssr61749 6 85374583 to 85374592 9 - TSS region transcription start site region 61749
Tssr61750 6 85374606 to 85374664 58 - TSS region transcription start site region 61750
Tssr61751 6 85374679 to 85374704 25 - TSS region transcription start site region 61751
Cpgi17643 6 85409104 to 85409442 338 CpG island CpG island 17643
Noto 6 85423886 to 85428877 4991 + protein coding gene notochord homeobox
Cpgi17644 6 85423985 to 85424381 396 CpG island CpG island 17644
Cpgi17645 6 85431764 to 85432433 669 CpG island CpG island 17645
Tssr57415 6 85431970 to 85432010 40 + TSS region transcription start site region 57415
Smyd5 6 85431989 to 85446435 14446 + protein coding gene SET and MYND domain containing 5
Tssr57416 6 85432011 to 85432045 34 + TSS region transcription start site region 57416
Tssr57417 6 85441705 to 85441716 11 + TSS region transcription start site region 57417
Pradc1 6 85446810 to 85451970 5160 - protein coding gene protease-associated domain containing 1
Cpgi17646 6 85450751 to 85452647 1896 CpG island CpG island 17646
Tssr61752 6 85451221 to 85451325 104 - TSS region transcription start site region 61752
Tssr57418 6 85451488 to 85451502 14 + TSS region transcription start site region 57418
Cct7 6 85451514 to 85468475 16961 + protein coding gene chaperonin containing Tcp1, subunit 7 (eta)
Tssr61753 6 85451829 to 85451843 14 - TSS region transcription start site region 61753
Tssr61754 6 85451863 to 85451892 29 - TSS region transcription start site region 61754
Tssr61755 6 85451955 to 85451990 35 - TSS region transcription start site region 61755
Tssr57419 6 85451983 to 85452003 20 + TSS region transcription start site region 57419
Tssr57420 6 85452005 to 85452026 21 + TSS region transcription start site region 57420
Tssr57421 6 85452041 to 85452087 46 + TSS region transcription start site region 57421
Tssr57422 6 85459191 to 85459233 42 + TSS region transcription start site region 57422
Tssr57423 6 85464875 to 85464883 8 + TSS region transcription start site region 57423
Fbxo41 6 85469574 to 85502994 33420 - protein coding gene F-box protein 41
Tssr1915 6 85475656 to 85475659 3 - TSS region transcription start site region 1915
Cpgi17647 6 85483702 to 85485006 1304 CpG island CpG island 17647
Cpgi17648 6 85502541 to 85503271 730 CpG island CpG island 17648
Tssr61756 6 85502928 to 85502965 37 - TSS region transcription start site region 61756
Tssr61757 6 85502980 to 85503034 54 - TSS region transcription start site region 61757
Egr4 6 85511122 to 85513542 2420 - protein coding gene early growth response 4
Cpgi17649 6 85511282 to 85514106 2824 CpG island CpG island 17649
Tssr61758 6 85513291 to 85513292 1 - TSS region transcription start site region 61758
Tssr61759 6 85513586 to 85513591 5 - TSS region transcription start site region 61759
Gm44023 6 85529452 to 85529920 468 + pseudogene predicted gene, 44023
Cpgi17650 6 85587289 to 85588253 964 CpG island CpG island 17650
Tssr57424 6 85587505 to 85587516 11 + TSS region transcription start site region 57424
Tssr57425 6 85587524 to 85587544 20 + TSS region transcription start site region 57425
Alms1 6 85587531 to 85702753 115222 + protein coding gene ALMS1, centrosome and basal body associated
Tssr57426 6 85587562 to 85587573 11 + TSS region transcription start site region 57426
Tssr57427 6 85587591 to 85587630 39 + TSS region transcription start site region 57427
Gm43588 6 85632864 to 85635161 2297 + unclassified gene predicted gene 43588
Gm42600 6 85679277 to 85682864 3587 + unclassified gene predicted gene 42600
Nat8f7 6 85706707 to 85709212 2505 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 7
Alms1-ps1 6 85721925 to 85756526 34601 + pseudogene ALMS1, centrosome and basal body associated, pseudogene 1
Gm27317 6 85743515 to 85743609 94 - miRNA gene predicted gene, 27317
Nat8f3 6 85760631 to 85765744 5113 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 3
Mir6375 6 85790140 to 85790234 94 - miRNA gene microRNA 6375
Alms1-ps2 6 85792117 to 85804057 11940 + pseudogene ALMS1, centrosome and basal body associated, pseudogene 2
Nat8f6 6 85808044 to 85809877 1833 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 6