Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:83802424-87932435

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689 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6 6 4464884 to 87426034 82961150 QTL collagen induced arthritis QTL 6
Pgia19 6 45314059 to 87426034 42111975 QTL proteoglycan induced arthritis 19
Etax6 6 71322621 to 86275719 14953098 QTL ethanol induced ataxia 6
Nagk 6 83795005 to 83802556 7551 + protein coding gene N-acetylglucosamine kinase
Paip2b 6 83806058 to 83831741 25683 - protein coding gene poly(A) binding protein interacting protein 2B
Cpgi17619 6 83831202 to 83831978 776 CpG island CpG island 17619
Tssr61712 6 83831683 to 83831702 19 - TSS region transcription start site region 61712
Tssr61713 6 83831705 to 83831720 15 - TSS region transcription start site region 61713
Tssr61714 6 83831736 to 83831750 14 - TSS region transcription start site region 61714
Gm23014 6 83836937 to 83837066 129 - snoRNA gene predicted gene, 23014
Tssr57383 6 83841643 to 83841649 6 + TSS region transcription start site region 57383
Gm5312 6 83841682 to 83842228 546 + pseudogene predicted gene 5312
Gm6342 6 83844439 to 83845125 686 - pseudogene predicted gene 6342
Tssr61715 6 83845117 to 83845127 10 - TSS region transcription start site region 61715
Cpgi17620 6 83866948 to 83867682 734 CpG island CpG island 17620
Zfp638 6 83867100 to 83986871 119771 + protein coding gene zinc finger protein 638
Tssr57384 6 83867103 to 83867125 22 + TSS region transcription start site region 57384
Tssr57385 6 83867132 to 83867143 11 + TSS region transcription start site region 57385
Tssr57386 6 83867417 to 83867423 6 + TSS region transcription start site region 57386
Gm44750 6 83870065 to 83872287 2222 + unclassified gene predicted gene 44750
Gm5138 6 83874379 to 83875380 1001 - pseudogene predicted gene 5138
Tssr61716 6 83888610 to 83888617 7 - TSS region transcription start site region 61716
Tssr61717 6 83892846 to 83892870 24 - TSS region transcription start site region 61717
Gm43919 6 83896959 to 83897322 363 + pseudogene predicted gene, 43919
Cpgi17621 6 83914159 to 83915154 995 CpG island CpG island 17621
Tssr57387 6 83914354 to 83914411 57 + TSS region transcription start site region 57387
Tssr57388 6 83953873 to 83953876 3 + TSS region transcription start site region 57388
Gm43920 6 83962277 to 83965048 2771 + sense intronic lncRNA gene predicted gene, 43920
Tssr57389 6 83978288 to 83978293 5 + TSS region transcription start site region 57389
Tssr57390 6 84008337 to 84008357 20 + TSS region transcription start site region 57390
Tssr57391 6 84008362 to 84008404 42 + TSS region transcription start site region 57391
Cpgi17622 6 84008376 to 84009100 724 CpG island CpG island 17622
Tssr57392 6 84008515 to 84008533 18 + TSS region transcription start site region 57392
Tssr57393 6 84008540 to 84008557 17 + TSS region transcription start site region 57393
Dysf 6 84008590 to 84211060 202470 + protein coding gene dysferlin
Tssr57394 6 84008634 to 84008645 11 + TSS region transcription start site region 57394
Tssr57395 6 84008737 to 84008753 16 + TSS region transcription start site region 57395
Tssr57396 6 84008804 to 84008815 11 + TSS region transcription start site region 57396
Gm33024 6 84008898 to 84012121 3223 - antisense lncRNA gene predicted gene, 33024
Tssr57397 6 84008936 to 84008946 10 + TSS region transcription start site region 57397
Tssr61718 6 84010091 to 84010094 3 - TSS region transcription start site region 61718
Cpgi17623 6 84018945 to 84019601 656 CpG island CpG island 17623
Tssr57398 6 84019346 to 84019351 5 + TSS region transcription start site region 57398
Tssr57399 6 84019364 to 84019383 19 + TSS region transcription start site region 57399
Tssr1912 6 84019394 to 84019406 12 + TSS region transcription start site region 1912
Gm7498 6 84031612 to 84032512 900 + pseudogene predicted gene 7498
Tssr57400 6 84088956 to 84088957 1 + TSS region transcription start site region 57400
Gm15475 6 84093772 to 84107007 13235 - antisense lncRNA gene predicted gene 15475
Cpgi17624 6 84105348 to 84106012 664 CpG island CpG island 17624
Tssr61719 6 84106969 to 84107008 39 - TSS region transcription start site region 61719
Tssr57401 6 84154720 to 84154731 11 + TSS region transcription start site region 57401
Tssr57402 6 84154748 to 84154759 11 + TSS region transcription start site region 57402
Tssr57403 6 84185745 to 84185774 29 + TSS region transcription start site region 57403
Gm44127 6 84225252 to 84286603 61351 + lincRNA gene predicted gene, 44127
Gm10445 6 84412942 to 84423838 10896 - lincRNA gene predicted gene 10445
D6Mit322 6 84467068 to 84467190 122 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 322
Gm38845 6 84479845 to 84522036 42191 - lncRNA gene predicted gene, 38845
D6Mit21 6 84518414 to 84518562 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 21
4930504D19Rik 6 84535876 to 84536321 445 + lincRNA gene RIKEN cDNA 4930504D19 gene
Tssr57404 6 84551090 to 84551096 6 + TSS region transcription start site region 57404
Cyp26b1 6 84571414 to 84593908 22494 - protein coding gene cytochrome P450, family 26, subfamily b, polypeptide 1
Cpgi17625 6 84574293 to 84574626 333 CpG island CpG island 17625
Cpgi17626 6 84583286 to 84586047 2761 CpG island CpG island 17626
Cpgi17627 6 84586524 to 84586838 314 CpG island CpG island 17627
Tssr61720 6 84587035 to 84587084 49 - TSS region transcription start site region 61720
Cpgi17628 6 84587285 to 84589473 2188 CpG island CpG island 17628
Tssr61721 6 84587644 to 84587654 10 - TSS region transcription start site region 61721
Tssr61722 6 84587937 to 84587986 49 - TSS region transcription start site region 61722
Tssr61723 6 84587991 to 84588010 19 - TSS region transcription start site region 61723
Tssr61724 6 84588296 to 84588319 23 - TSS region transcription start site region 61724
Tssr61725 6 84588600 to 84588609 9 - TSS region transcription start site region 61725
Tssr61726 6 84588631 to 84588645 14 - TSS region transcription start site region 61726
Tssr61727 6 84588651 to 84588687 36 - TSS region transcription start site region 61727
Tssr61728 6 84588695 to 84588706 11 - TSS region transcription start site region 61728
Tssr61729 6 84588963 to 84588983 20 - TSS region transcription start site region 61729
Cpgi17629 6 84589913 to 84590483 570 CpG island CpG island 17629
Tssr61730 6 84593916 to 84593922 6 - TSS region transcription start site region 61730
Exoc6b 6 84618487 to 85069513 451026 - protein coding gene exocyst complex component 6B
Tssr61731 6 84771256 to 84771268 12 - TSS region transcription start site region 61731
Tssr57405 6 84812163 to 84812165 2 + TSS region transcription start site region 57405
Gm7507 6 84812240 to 84813247 1007 + pseudogene predicted gene 7507
AW125320 6 84898157 to 84898627 470 unclassified gene cDNA sequence AW125320
Gm44012 6 84921123 to 84924996 3873 + antisense lncRNA gene predicted gene, 44012
Tssr61732 6 84970475 to 84970486 11 - TSS region transcription start site region 61732
Tssr61733 6 84970855 to 84970858 3 - TSS region transcription start site region 61733
Tssr61734 6 85001000 to 85001006 6 - TSS region transcription start site region 61734
Gm44011 6 85062574 to 85062967 393 + pseudogene predicted gene, 44011
Gm26353 6 85066183 to 85066437 254 + unclassified non-coding RNA gene predicted gene, 26353
Cpgi17630 6 85068740 to 85069826 1086 CpG island CpG island 17630
Tssr61735 6 85069436 to 85069445 9 - TSS region transcription start site region 61735
Tssr61736 6 85069449 to 85069523 74 - TSS region transcription start site region 61736
Tssr57406 6 85076179 to 85076184 5 + TSS region transcription start site region 57406
Npm3-ps1 6 85076192 to 85076719 527 + pseudogene nucleoplasmin 3, pseudogene 1
Cpgi17631 6 85076304 to 85076518 214 CpG island CpG island 17631
Tssr57407 6 85076360 to 85076386 26 + TSS region transcription start site region 57407
Gm43954 6 85092235 to 85092778 543 + pseudogene predicted gene, 43954
Gm43955 6 85096927 to 85097068 141 + pseudogene predicted gene, 43955
Gm43957 6 85102813 to 85103569 756 + pseudogene predicted gene, 43957
Tssr57408 6 85105439 to 85105449 10 + TSS region transcription start site region 57408
Gm5878 6 85111416 to 85126094 14678 - protein coding gene predicted gene 5878
Gm43959 6 85111693 to 85112269 576 + pseudogene predicted gene, 43959
Tssr1913 6 85122729 to 85122731 2 - TSS region transcription start site region 1913
D6Mit22 6 85124788 to 85124916 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 22
Cpgi17632 6 85125606 to 85126366 760 CpG island CpG island 17632
Tssr61737 6 85126041 to 85126054 13 - TSS region transcription start site region 61737
Tssr61738 6 85126063 to 85126079 16 - TSS region transcription start site region 61738
Tssr61739 6 85126088 to 85126099 11 - TSS region transcription start site region 61739
Tssr61740 6 85126125 to 85126132 7 - TSS region transcription start site region 61740
Spr 6 85133680 to 85137764 4084 - protein coding gene sepiapterin reductase
Cpgi17633 6 85137295 to 85137938 643 CpG island CpG island 17633
Tssr61741 6 85137743 to 85137781 38 - TSS region transcription start site region 61741
Tssr61742 6 85137798 to 85137807 9 - TSS region transcription start site region 61742
Gm10444 6 85140505 to 85143649 3144 + pseudogene predicted pseudogene 10444
Gm44285 6 85145446 to 85146385 939 - pseudogene predicted gene, 44285
Gm22893 6 85150336 to 85150451 115 + snoRNA gene predicted gene, 22893
Cpgi17634 6 85154893 to 85155441 548 CpG island CpG island 17634
Spr-ps1 6 85154983 to 85155971 988 + pseudogene sepiapterin reductase pseudogene 1
Tssr57409 6 85154992 to 85155006 14 + TSS region transcription start site region 57409
Gm33200 6 85165835 to 85167374 1539 + lncRNA gene predicted gene, 33200
Cpgi17635 6 85185931 to 85186370 439 CpG island CpG island 17635
Cpgi17636 6 85186546 to 85187036 490 CpG island CpG island 17636
Cpgi17637 6 85187151 to 85188834 1683 CpG island CpG island 17637
Tssr57410 6 85187497 to 85187510 13 + TSS region transcription start site region 57410
Tssr57411 6 85187511 to 85187523 12 + TSS region transcription start site region 57411
Tssr57412 6 85187526 to 85187569 43 + TSS region transcription start site region 57412
Emx1 6 85187931 to 85204463 16532 + protein coding gene empty spiracles homeobox 1
Cpgi17638 6 85189940 to 85190900 960 CpG island CpG island 17638
Cpgi17639 6 85193930 to 85194273 343 CpG island CpG island 17639
Sfxn5 6 85213049 to 85333422 120373 - protein coding gene sideroflexin 5
Tssr61743 6 85213900 to 85213906 6 - TSS region transcription start site region 61743
Cpgi17640 6 85223927 to 85224097 170 CpG island CpG island 17640
D930014O13Rik 6 85243862 to 85246656 2794 unclassified gene RIKEN cDNA D930014O13 gene
D6Mit391 6 85277319 to 85277419 100 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 391
D6Mit6 6 85277319 to 85277417 98 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 6
Tssr57413 6 85298490 to 85298495 5 + TSS region transcription start site region 57413
Cpgi17641 6 85332367 to 85334019 1652 CpG island CpG island 17641
Tssr57414 6 85332564 to 85332566 2 + TSS region transcription start site region 57414
Tssr61744 6 85333412 to 85333441 29 - TSS region transcription start site region 61744
Tssr61745 6 85333478 to 85333489 11 - TSS region transcription start site region 61745
Rab11fip5 6 85334962 to 85374634 39672 - protein coding gene RAB11 family interacting protein 5 (class I)
Mir705 6 85336292 to 85336373 81 - miRNA gene microRNA 705
Tssr61746 6 85370098 to 85370109 11 - TSS region transcription start site region 61746
Cpgi17642 6 85373879 to 85375206 1327 CpG island CpG island 17642
Tssr1914 6 85374424 to 85374445 21 - TSS region transcription start site region 1914
Tssr61747 6 85374542 to 85374553 11 - TSS region transcription start site region 61747
Tssr61748 6 85374574 to 85374579 5 - TSS region transcription start site region 61748
Tssr61749 6 85374583 to 85374592 9 - TSS region transcription start site region 61749
Tssr61750 6 85374606 to 85374664 58 - TSS region transcription start site region 61750
Tssr61751 6 85374679 to 85374704 25 - TSS region transcription start site region 61751
Cpgi17643 6 85409104 to 85409442 338 CpG island CpG island 17643
Noto 6 85423886 to 85428877 4991 + protein coding gene notochord homeobox
Cpgi17644 6 85423985 to 85424381 396 CpG island CpG island 17644
Cpgi17645 6 85431764 to 85432433 669 CpG island CpG island 17645
Tssr57415 6 85431970 to 85432010 40 + TSS region transcription start site region 57415
Smyd5 6 85431989 to 85446435 14446 + protein coding gene SET and MYND domain containing 5
Tssr57416 6 85432011 to 85432045 34 + TSS region transcription start site region 57416
Tssr57417 6 85441705 to 85441716 11 + TSS region transcription start site region 57417
Pradc1 6 85446810 to 85451970 5160 - protein coding gene protease-associated domain containing 1
Cpgi17646 6 85450751 to 85452647 1896 CpG island CpG island 17646
Tssr61752 6 85451221 to 85451325 104 - TSS region transcription start site region 61752
Tssr57418 6 85451488 to 85451502 14 + TSS region transcription start site region 57418
Cct7 6 85451514 to 85468475 16961 + protein coding gene chaperonin containing Tcp1, subunit 7 (eta)
Tssr61753 6 85451829 to 85451843 14 - TSS region transcription start site region 61753
Tssr61754 6 85451863 to 85451892 29 - TSS region transcription start site region 61754
Tssr61755 6 85451955 to 85451990 35 - TSS region transcription start site region 61755
Tssr57419 6 85451983 to 85452003 20 + TSS region transcription start site region 57419
Tssr57420 6 85452005 to 85452026 21 + TSS region transcription start site region 57420
Tssr57421 6 85452041 to 85452087 46 + TSS region transcription start site region 57421
Tssr57422 6 85459191 to 85459233 42 + TSS region transcription start site region 57422
Tssr57423 6 85464875 to 85464883 8 + TSS region transcription start site region 57423
Fbxo41 6 85469574 to 85502994 33420 - protein coding gene F-box protein 41
Tssr1915 6 85475656 to 85475659 3 - TSS region transcription start site region 1915
Cpgi17647 6 85483702 to 85485006 1304 CpG island CpG island 17647
Cpgi17648 6 85502541 to 85503271 730 CpG island CpG island 17648
Tssr61756 6 85502928 to 85502965 37 - TSS region transcription start site region 61756
Tssr61757 6 85502980 to 85503034 54 - TSS region transcription start site region 61757
Egr4 6 85511122 to 85513542 2420 - protein coding gene early growth response 4
Cpgi17649 6 85511282 to 85514106 2824 CpG island CpG island 17649
Tssr61758 6 85513291 to 85513292 1 - TSS region transcription start site region 61758
Tssr61759 6 85513586 to 85513591 5 - TSS region transcription start site region 61759
Gm44023 6 85529452 to 85529920 468 + pseudogene predicted gene, 44023
Cpgi17650 6 85587289 to 85588253 964 CpG island CpG island 17650
Tssr57424 6 85587505 to 85587516 11 + TSS region transcription start site region 57424
Tssr57425 6 85587524 to 85587544 20 + TSS region transcription start site region 57425
Alms1 6 85587531 to 85702753 115222 + protein coding gene ALMS1, centrosome and basal body associated
Tssr57426 6 85587562 to 85587573 11 + TSS region transcription start site region 57426
Tssr57427 6 85587591 to 85587630 39 + TSS region transcription start site region 57427
Gm43588 6 85632864 to 85635161 2297 + unclassified gene predicted gene 43588
Gm42600 6 85679277 to 85682864 3587 + unclassified gene predicted gene 42600
Nat8f7 6 85706707 to 85709212 2505 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 7
Alms1-ps1 6 85721925 to 85756526 34601 + pseudogene ALMS1, centrosome and basal body associated, pseudogene 1
Gm27317 6 85743515 to 85743609 94 - miRNA gene predicted gene, 27317
Nat8f3 6 85760631 to 85765744 5113 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 3
Mir6375 6 85790140 to 85790234 94 - miRNA gene microRNA 6375
Alms1-ps2 6 85792117 to 85804057 11940 + pseudogene ALMS1, centrosome and basal body associated, pseudogene 2
Nat8f6 6 85808044 to 85809877 1833 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 6
Nat8f5 6 85817218 to 85820972 3754 - protein coding gene N-acetyltransferase 8 (GCN5-related) family member 5
Tssr61760 6 85820936 to 85820962 26 - TSS region transcription start site region 61760
Tssr61761 6 85820965 to 85820977 12 - TSS region transcription start site region 61761
Tssr61762 6 85820981 to 85820990 9 - TSS region transcription start site region 61762