Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:83644379-84105380

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clec4f 6 83644542 to 83656116 11574 - protein coding gene C-type lectin domain family 4, member f
D6Mit69 6 83645707 to 83645868 161 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 69
Tssr61696 6 83656082 to 83656125 43 - TSS region transcription start site region 61696
Cd207 6 83671215 to 83677857 6642 - protein coding gene CD207 antigen
Tssr61697 6 83677807 to 83677812 5 - TSS region transcription start site region 61697
Vax2os 6 83692806 to 83712201 19395 - antisense lncRNA gene ventral anterior homeobox 2, opposite strand
Tssr61698 6 83698081 to 83698103 22 - TSS region transcription start site region 61698
Cpgi17609 6 83702191 to 83703094 903 CpG island CpG island 17609
Gm27772 6 83702491 to 83702677 186 + unclassified non-coding RNA gene predicted gene, 27772
Tssr61699 6 83703508 to 83703514 6 - TSS region transcription start site region 61699
Cpgi17610 6 83703510 to 83703746 236 CpG island CpG island 17610
Gm27631 6 83703518 to 83703983 465 + unclassified non-coding RNA gene predicted gene, 27631
Tssr61700 6 83703528 to 83703533 5 - TSS region transcription start site region 61700
Tssr61701 6 83703541 to 83703554 13 - TSS region transcription start site region 61701
Cpgi17611 6 83710453 to 83712430 1977 CpG island CpG island 17611
Gm27893 6 83710739 to 83710932 193 + unclassified non-coding RNA gene predicted gene, 27893
Tssr61702 6 83710850 to 83710865 15 - TSS region transcription start site region 61702
Tssr57361 6 83711232 to 83711288 56 + TSS region transcription start site region 57361
Vax2 6 83711264 to 83738304 27040 + protein coding gene ventral anterior homeobox 2
Gm32943 6 83712798 to 83716382 3584 - lncRNA gene predicted gene, 32943
D6Mit8.2 6 83713824 to 83713940 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8.2
D6Mit8 6 83713869 to 83714031 162 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8
Bw18 6 83713869 to 83714031 162 QTL body weight QTL 18
D6Mit8.1 6 83714026 to 83714250 224 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8.1
Tssr57362 6 83714536 to 83714552 16 + TSS region transcription start site region 57362
Cpgi17612 6 83714566 to 83714897 331 CpG island CpG island 17612
Cpgi17613 6 83715681 to 83716371 690 CpG island CpG island 17613
Tssr57363 6 83716646 to 83716649 3 + TSS region transcription start site region 57363
Gm25054 6 83721296 to 83721392 96 + snRNA gene predicted gene, 25054
Tssr57364 6 83742984 to 83742995 11 + TSS region transcription start site region 57364
Tssr57365 6 83743010 to 83743038 28 + TSS region transcription start site region 57365
Atp6v1b1 6 83743017 to 83758810 15793 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit B1
Tssr57366 6 83743040 to 83743065 25 + TSS region transcription start site region 57366
Cpgi17614 6 83757907 to 83758573 666 CpG island CpG island 17614
Tssr57367 6 83758632 to 83758644 12 + TSS region transcription start site region 57367
Tssr57368 6 83758768 to 83758779 11 + TSS region transcription start site region 57368
Tssr57369 6 83758793 to 83758803 10 + TSS region transcription start site region 57369
Tssr57370 6 83758847 to 83758865 18 + TSS region transcription start site region 57370
Tssr57371 6 83758911 to 83758920 9 + TSS region transcription start site region 57371
Tssr57372 6 83758923 to 83758935 12 + TSS region transcription start site region 57372
1700124L16Rik 6 83761759 to 83762508 749 - antisense lncRNA gene RIKEN cDNA 1700124L16 gene
Cpgi17615 6 83761899 to 83762064 165 CpG island CpG island 17615
Tssr61703 6 83762488 to 83762498 10 - TSS region transcription start site region 61703
Tssr61704 6 83762503 to 83762511 8 - TSS region transcription start site region 61704
Ankrd53 6 83762646 to 83768326 5680 + protein coding gene ankyrin repeat domain 53
Tssr57373 6 83762665 to 83762692 27 + TSS region transcription start site region 57373
Cpgi17616 6 83762700 to 83763376 676 CpG island CpG island 17616
Tssr57374 6 83762701 to 83762710 9 + TSS region transcription start site region 57374
Tex261 6 83768885 to 83775813 6928 - protein coding gene testis expressed gene 261
Cpgi17617 6 83775065 to 83776235 1170 CpG island CpG island 17617
Tssr61705 6 83775560 to 83775569 9 - TSS region transcription start site region 61705
Tssr61706 6 83775575 to 83775580 5 - TSS region transcription start site region 61706
Tssr61707 6 83775582 to 83775597 15 - TSS region transcription start site region 61707
Tssr61708 6 83775610 to 83775615 5 - TSS region transcription start site region 61708
Tssr57375 6 83775638 to 83775651 13 + TSS region transcription start site region 57375
Tssr61709 6 83775669 to 83775676 7 - TSS region transcription start site region 61709
Tssr61710 6 83775746 to 83775759 13 - TSS region transcription start site region 61710
Tssr61711 6 83775767 to 83775826 59 - TSS region transcription start site region 61711
Tssr1911 6 83775928 to 83775941 13 + TSS region transcription start site region 1911
Gm7443 6 83792602 to 83792979 377 - pseudogene predicted gene 7443
Cpgi17618 6 83794637 to 83795786 1149 CpG island CpG island 17618
Tssr57376 6 83794974 to 83794985 11 + TSS region transcription start site region 57376
Tssr57377 6 83795002 to 83795015 13 + TSS region transcription start site region 57377
Nagk 6 83795005 to 83802556 7551 + protein coding gene N-acetylglucosamine kinase
Tssr57378 6 83795022 to 83795034 12 + TSS region transcription start site region 57378
Tssr57379 6 83795158 to 83795169 11 + TSS region transcription start site region 57379
Tssr57380 6 83795182 to 83795204 22 + TSS region transcription start site region 57380
Tssr57381 6 83795205 to 83795238 33 + TSS region transcription start site region 57381
Tssr57382 6 83795246 to 83795255 9 + TSS region transcription start site region 57382
Paip2b 6 83806058 to 83831741 25683 - protein coding gene poly(A) binding protein interacting protein 2B
Cpgi17619 6 83831202 to 83831978 776 CpG island CpG island 17619
Tssr61712 6 83831683 to 83831702 19 - TSS region transcription start site region 61712
Tssr61713 6 83831705 to 83831720 15 - TSS region transcription start site region 61713
Tssr61714 6 83831736 to 83831750 14 - TSS region transcription start site region 61714
Gm23014 6 83836937 to 83837066 129 - snoRNA gene predicted gene, 23014
Tssr57383 6 83841643 to 83841649 6 + TSS region transcription start site region 57383
Gm5312 6 83841682 to 83842228 546 + pseudogene predicted gene 5312
Gm6342 6 83844439 to 83845125 686 - pseudogene predicted gene 6342
Tssr61715 6 83845117 to 83845127 10 - TSS region transcription start site region 61715
Cpgi17620 6 83866948 to 83867682 734 CpG island CpG island 17620
Zfp638 6 83867100 to 83986871 119771 + protein coding gene zinc finger protein 638
Tssr57384 6 83867103 to 83867125 22 + TSS region transcription start site region 57384
Tssr57385 6 83867132 to 83867143 11 + TSS region transcription start site region 57385
Tssr57386 6 83867417 to 83867423 6 + TSS region transcription start site region 57386
Gm44750 6 83870065 to 83872287 2222 + unclassified gene predicted gene 44750
Gm5138 6 83874379 to 83875380 1001 - pseudogene predicted gene 5138
Tssr61716 6 83888610 to 83888617 7 - TSS region transcription start site region 61716
Tssr61717 6 83892846 to 83892870 24 - TSS region transcription start site region 61717
Gm43919 6 83896959 to 83897322 363 + pseudogene predicted gene, 43919
Cpgi17621 6 83914159 to 83915154 995 CpG island CpG island 17621
Tssr57387 6 83914354 to 83914411 57 + TSS region transcription start site region 57387
Tssr57388 6 83953873 to 83953876 3 + TSS region transcription start site region 57388
Gm43920 6 83962277 to 83965048 2771 + sense intronic lncRNA gene predicted gene, 43920
Tssr57389 6 83978288 to 83978293 5 + TSS region transcription start site region 57389
Tssr57390 6 84008337 to 84008357 20 + TSS region transcription start site region 57390
Tssr57391 6 84008362 to 84008404 42 + TSS region transcription start site region 57391
Cpgi17622 6 84008376 to 84009100 724 CpG island CpG island 17622
Tssr57392 6 84008515 to 84008533 18 + TSS region transcription start site region 57392
Tssr57393 6 84008540 to 84008557 17 + TSS region transcription start site region 57393
Dysf 6 84008590 to 84211060 202470 + protein coding gene dysferlin
Tssr57394 6 84008634 to 84008645 11 + TSS region transcription start site region 57394
Tssr57395 6 84008737 to 84008753 16 + TSS region transcription start site region 57395
Tssr57396 6 84008804 to 84008815 11 + TSS region transcription start site region 57396
Gm33024 6 84008898 to 84012121 3223 - antisense lncRNA gene predicted gene, 33024
Tssr57397 6 84008936 to 84008946 10 + TSS region transcription start site region 57397
Tssr61718 6 84010091 to 84010094 3 - TSS region transcription start site region 61718
Cpgi17623 6 84018945 to 84019601 656 CpG island CpG island 17623
Tssr57398 6 84019346 to 84019351 5 + TSS region transcription start site region 57398
Tssr57399 6 84019364 to 84019383 19 + TSS region transcription start site region 57399
Tssr1912 6 84019394 to 84019406 12 + TSS region transcription start site region 1912
Gm7498 6 84031612 to 84032512 900 + pseudogene predicted gene 7498
Tssr57400 6 84088956 to 84088957 1 + TSS region transcription start site region 57400
Gm15475 6 84093772 to 84107007 13235 - antisense lncRNA gene predicted gene 15475
Cpgi17624 6 84105348 to 84106012 664 CpG island CpG island 17624
T2dm4sa 6 147052561 to 83713869 -63338692 QTL type 2 diabetes mellitus 4 in SMXA RI mice