Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:83572491-83832677

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stambp 6 83543211 to 83572729 29518 - protein coding gene STAM binding protein
Gm21284 6 83568039 to 83588123 20084 + antisense lncRNA gene predicted gene, 21284
Cpgi17606 6 83572118 to 83572580 462 CpG island CpG island 17606
Tssr61693 6 83575822 to 83575832 10 - TSS region transcription start site region 61693
Tssr61694 6 83575841 to 83575846 5 - TSS region transcription start site region 61694
Tssr57358 6 83575890 to 83575900 10 + TSS region transcription start site region 57358
Tssr57359 6 83575917 to 83575925 8 + TSS region transcription start site region 57359
Tssr57360 6 83575929 to 83575942 13 + TSS region transcription start site region 57360
Gm24990 6 83591821 to 83592143 322 - unclassified non-coding RNA gene predicted gene, 24990
Cpgi17607 6 83599029 to 83599281 252 CpG island CpG island 17607
Gm7424 6 83600807 to 83601708 901 - pseudogene predicted gene 7424
Cpgi17608 6 83626889 to 83627273 384 CpG island CpG island 17608
Tssr61695 6 83627202 to 83627249 47 - TSS region transcription start site region 61695
D6Mit247 6 83633400 to 83633541 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 247
Clec4f 6 83644542 to 83656116 11574 - protein coding gene C-type lectin domain family 4, member f
D6Mit69 6 83645707 to 83645868 161 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 69
Tssr61696 6 83656082 to 83656125 43 - TSS region transcription start site region 61696
Cd207 6 83671215 to 83677857 6642 - protein coding gene CD207 antigen
Tssr61697 6 83677807 to 83677812 5 - TSS region transcription start site region 61697
Vax2os 6 83692806 to 83712201 19395 - antisense lncRNA gene ventral anterior homeobox 2, opposite strand
Tssr61698 6 83698081 to 83698103 22 - TSS region transcription start site region 61698
Cpgi17609 6 83702191 to 83703094 903 CpG island CpG island 17609
Gm27772 6 83702491 to 83702677 186 + unclassified non-coding RNA gene predicted gene, 27772
Tssr61699 6 83703508 to 83703514 6 - TSS region transcription start site region 61699
Cpgi17610 6 83703510 to 83703746 236 CpG island CpG island 17610
Gm27631 6 83703518 to 83703983 465 + unclassified non-coding RNA gene predicted gene, 27631
Tssr61700 6 83703528 to 83703533 5 - TSS region transcription start site region 61700
Tssr61701 6 83703541 to 83703554 13 - TSS region transcription start site region 61701
Cpgi17611 6 83710453 to 83712430 1977 CpG island CpG island 17611
Gm27893 6 83710739 to 83710932 193 + unclassified non-coding RNA gene predicted gene, 27893
Tssr61702 6 83710850 to 83710865 15 - TSS region transcription start site region 61702
Tssr57361 6 83711232 to 83711288 56 + TSS region transcription start site region 57361
Vax2 6 83711264 to 83738304 27040 + protein coding gene ventral anterior homeobox 2
Gm32943 6 83712798 to 83716382 3584 - lncRNA gene predicted gene, 32943
D6Mit8.2 6 83713824 to 83713940 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8.2
Bw18 6 83713869 to 83714031 162 QTL body weight QTL 18
D6Mit8 6 83713869 to 83714031 162 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8
D6Mit8.1 6 83714026 to 83714250 224 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8.1
Tssr57362 6 83714536 to 83714552 16 + TSS region transcription start site region 57362
Cpgi17612 6 83714566 to 83714897 331 CpG island CpG island 17612
Cpgi17613 6 83715681 to 83716371 690 CpG island CpG island 17613
Tssr57363 6 83716646 to 83716649 3 + TSS region transcription start site region 57363
Gm25054 6 83721296 to 83721392 96 + snRNA gene predicted gene, 25054
Tssr57364 6 83742984 to 83742995 11 + TSS region transcription start site region 57364
Tssr57365 6 83743010 to 83743038 28 + TSS region transcription start site region 57365
Atp6v1b1 6 83743017 to 83758810 15793 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit B1
Tssr57366 6 83743040 to 83743065 25 + TSS region transcription start site region 57366
Cpgi17614 6 83757907 to 83758573 666 CpG island CpG island 17614
Tssr57367 6 83758632 to 83758644 12 + TSS region transcription start site region 57367
Tssr57368 6 83758768 to 83758779 11 + TSS region transcription start site region 57368
Tssr57369 6 83758793 to 83758803 10 + TSS region transcription start site region 57369
Tssr57370 6 83758847 to 83758865 18 + TSS region transcription start site region 57370
Tssr57371 6 83758911 to 83758920 9 + TSS region transcription start site region 57371
Tssr57372 6 83758923 to 83758935 12 + TSS region transcription start site region 57372
1700124L16Rik 6 83761759 to 83762508 749 - antisense lncRNA gene RIKEN cDNA 1700124L16 gene
Cpgi17615 6 83761899 to 83762064 165 CpG island CpG island 17615
Tssr61703 6 83762488 to 83762498 10 - TSS region transcription start site region 61703
Tssr61704 6 83762503 to 83762511 8 - TSS region transcription start site region 61704
Ankrd53 6 83762646 to 83768326 5680 + protein coding gene ankyrin repeat domain 53
Tssr57373 6 83762665 to 83762692 27 + TSS region transcription start site region 57373
Cpgi17616 6 83762700 to 83763376 676 CpG island CpG island 17616
Tssr57374 6 83762701 to 83762710 9 + TSS region transcription start site region 57374
Tex261 6 83768885 to 83775813 6928 - protein coding gene testis expressed gene 261
Cpgi17617 6 83775065 to 83776235 1170 CpG island CpG island 17617
Tssr61705 6 83775560 to 83775569 9 - TSS region transcription start site region 61705
Tssr61706 6 83775575 to 83775580 5 - TSS region transcription start site region 61706
Tssr61707 6 83775582 to 83775597 15 - TSS region transcription start site region 61707
Tssr61708 6 83775610 to 83775615 5 - TSS region transcription start site region 61708
Tssr57375 6 83775638 to 83775651 13 + TSS region transcription start site region 57375
Tssr61709 6 83775669 to 83775676 7 - TSS region transcription start site region 61709
Tssr61710 6 83775746 to 83775759 13 - TSS region transcription start site region 61710
Tssr61711 6 83775767 to 83775826 59 - TSS region transcription start site region 61711
Tssr1911 6 83775928 to 83775941 13 + TSS region transcription start site region 1911
Gm7443 6 83792602 to 83792979 377 - pseudogene predicted gene 7443
Cpgi17618 6 83794637 to 83795786 1149 CpG island CpG island 17618
Tssr57376 6 83794974 to 83794985 11 + TSS region transcription start site region 57376
Tssr57377 6 83795002 to 83795015 13 + TSS region transcription start site region 57377
Nagk 6 83795005 to 83802556 7551 + protein coding gene N-acetylglucosamine kinase
Tssr57378 6 83795022 to 83795034 12 + TSS region transcription start site region 57378
Tssr57379 6 83795158 to 83795169 11 + TSS region transcription start site region 57379
Tssr57380 6 83795182 to 83795204 22 + TSS region transcription start site region 57380
Tssr57381 6 83795205 to 83795238 33 + TSS region transcription start site region 57381
Tssr57382 6 83795246 to 83795255 9 + TSS region transcription start site region 57382
Paip2b 6 83806058 to 83831741 25683 - protein coding gene poly(A) binding protein interacting protein 2B
Cpgi17619 6 83831202 to 83831978 776 CpG island CpG island 17619
Tssr61712 6 83831683 to 83831702 19 - TSS region transcription start site region 61712
Tssr61713 6 83831705 to 83831720 15 - TSS region transcription start site region 61713
Tssr61714 6 83831736 to 83831750 14 - TSS region transcription start site region 61714
T2dm4sa 6 147052561 to 83713869 -63338692 QTL type 2 diabetes mellitus 4 in SMXA RI mice