Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:83445582-84105597

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tet3 6 83362373 to 83457242 94869 - protein coding gene tet methylcytosine dioxygenase 3
B230319C09Rik 6 83441755 to 83448322 6567 + lncRNA gene RIKEN cDNA B230319C09 gene
Tssr61650 6 83452791 to 83452794 3 - TSS region transcription start site region 61650
Tssr61651 6 83455454 to 83455472 18 - TSS region transcription start site region 61651
Tssr61652 6 83455474 to 83455512 38 - TSS region transcription start site region 61652
Cpgi17604 6 83455512 to 83457432 1920 CpG island CpG island 17604
Tssr61653 6 83456376 to 83456392 16 - TSS region transcription start site region 61653
Tssr61654 6 83456406 to 83456421 15 - TSS region transcription start site region 61654
Tssr61655 6 83456427 to 83456444 17 - TSS region transcription start site region 61655
Tssr61656 6 83456476 to 83456524 48 - TSS region transcription start site region 61656
Tssr61657 6 83456531 to 83456569 38 - TSS region transcription start site region 61657
Tssr61658 6 83456789 to 83456806 17 - TSS region transcription start site region 61658
Tssr61659 6 83456812 to 83456862 50 - TSS region transcription start site region 61659
Tssr61660 6 83457180 to 83457217 37 - TSS region transcription start site region 61660
Tssr61661 6 83457523 to 83457543 20 - TSS region transcription start site region 61661
D6UmiJ2 6 83457688 to 83457846 158 DNA segment DNA segment, Chr 6, University of Michigan Jones 2
Tssr61662 6 83459105 to 83459112 7 - TSS region transcription start site region 61662
D6Mit128 6 83471199 to 83471322 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 128
D6Mit1006 6 83471203 to 83471360 157 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1006
Dguok 6 83480217 to 83506969 26752 - protein coding gene deoxyguanosine kinase
Tssr61663 6 83506256 to 83506260 4 - TSS region transcription start site region 61663
Cpgi17605 6 83506502 to 83507386 884 CpG island CpG island 17605
Tssr61664 6 83506816 to 83506823 7 - TSS region transcription start site region 61664
Tssr61665 6 83506830 to 83506835 5 - TSS region transcription start site region 61665
Tssr61666 6 83506838 to 83506850 12 - TSS region transcription start site region 61666
Tssr61667 6 83506865 to 83506876 11 - TSS region transcription start site region 61667
Tssr61668 6 83506889 to 83506894 5 - TSS region transcription start site region 61668
Tssr61669 6 83506895 to 83506927 32 - TSS region transcription start site region 61669
Tssr1908 6 83507081 to 83507106 25 + TSS region transcription start site region 1908
Actg2 6 83512909 to 83536251 23342 - protein coding gene actin, gamma 2, smooth muscle, enteric
Tssr61670 6 83512934 to 83512974 40 - TSS region transcription start site region 61670
Tssr61671 6 83520755 to 83520768 13 - TSS region transcription start site region 61671
Tssr57355 6 83523166 to 83523186 20 + TSS region transcription start site region 57355
Tssr57356 6 83523191 to 83523240 49 + TSS region transcription start site region 57356
Tssr61672 6 83523199 to 83523216 17 - TSS region transcription start site region 61672
Tssr61673 6 83523219 to 83523240 21 - TSS region transcription start site region 61673
Tssr61674 6 83526879 to 83526898 19 - TSS region transcription start site region 61674
Tssr61675 6 83526915 to 83526933 18 - TSS region transcription start site region 61675
Tssr61676 6 83527345 to 83527358 13 - TSS region transcription start site region 61676
Tssr61677 6 83527366 to 83527373 7 - TSS region transcription start site region 61677
Tssr61678 6 83527452 to 83527500 48 - TSS region transcription start site region 61678
Tssr61679 6 83527773 to 83527807 34 - TSS region transcription start site region 61679
Tssr61680 6 83527986 to 83527993 7 - TSS region transcription start site region 61680
Tssr61681 6 83528968 to 83528973 5 - TSS region transcription start site region 61681
Gm38844 6 83531677 to 83547236 15559 + lncRNA gene predicted gene, 38844
D6UmiJ1 6 83535227 to 83535383 156 DNA segment DNA segment, Chr 6, University of Michigan Jones 1
Tssr61682 6 83536000 to 83536015 15 - TSS region transcription start site region 61682
Tssr61683 6 83536027 to 83536034 7 - TSS region transcription start site region 61683
Tssr61684 6 83536215 to 83536230 15 - TSS region transcription start site region 61684
Tssr61685 6 83536240 to 83536270 30 - TSS region transcription start site region 61685
Tssr61686 6 83536399 to 83536434 35 - TSS region transcription start site region 61686
Tssr61687 6 83536469 to 83536476 7 - TSS region transcription start site region 61687
Tssr61688 6 83536523 to 83536541 18 - TSS region transcription start site region 61688
Tssr61689 6 83536549 to 83536552 3 - TSS region transcription start site region 61689
Tssr61690 6 83536556 to 83536569 13 - TSS region transcription start site region 61690
Tssr61691 6 83537120 to 83537130 10 - TSS region transcription start site region 61691
Tssr1909 6 83537142 to 83537149 7 - TSS region transcription start site region 1909
Tssr1910 6 83537155 to 83537164 9 - TSS region transcription start site region 1910
Stambp 6 83543211 to 83572729 29518 - protein coding gene STAM binding protein
Tssr57357 6 83544984 to 83544986 2 + TSS region transcription start site region 57357
Gm18537 6 83549398 to 83550381 983 - pseudogene predicted gene, 18537
Gm21284 6 83568039 to 83588123 20084 + antisense lncRNA gene predicted gene, 21284
Cpgi17606 6 83572118 to 83572580 462 CpG island CpG island 17606
Tssr61692 6 83572429 to 83572472 43 - TSS region transcription start site region 61692
Tssr61693 6 83575822 to 83575832 10 - TSS region transcription start site region 61693
Tssr61694 6 83575841 to 83575846 5 - TSS region transcription start site region 61694
Tssr57358 6 83575890 to 83575900 10 + TSS region transcription start site region 57358
Tssr57359 6 83575917 to 83575925 8 + TSS region transcription start site region 57359
Tssr57360 6 83575929 to 83575942 13 + TSS region transcription start site region 57360
Gm24990 6 83591821 to 83592143 322 - unclassified non-coding RNA gene predicted gene, 24990
Cpgi17607 6 83599029 to 83599281 252 CpG island CpG island 17607
Gm7424 6 83600807 to 83601708 901 - pseudogene predicted gene 7424
Cpgi17608 6 83626889 to 83627273 384 CpG island CpG island 17608
Tssr61695 6 83627202 to 83627249 47 - TSS region transcription start site region 61695
D6Mit247 6 83633400 to 83633541 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 247
Clec4f 6 83644542 to 83656116 11574 - protein coding gene C-type lectin domain family 4, member f
D6Mit69 6 83645707 to 83645868 161 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 69
Tssr61696 6 83656082 to 83656125 43 - TSS region transcription start site region 61696
Cd207 6 83671215 to 83677857 6642 - protein coding gene CD207 antigen
Tssr61697 6 83677807 to 83677812 5 - TSS region transcription start site region 61697
Vax2os 6 83692806 to 83712201 19395 - antisense lncRNA gene ventral anterior homeobox 2, opposite strand
Tssr61698 6 83698081 to 83698103 22 - TSS region transcription start site region 61698
Cpgi17609 6 83702191 to 83703094 903 CpG island CpG island 17609
Gm27772 6 83702491 to 83702677 186 + unclassified non-coding RNA gene predicted gene, 27772
Tssr61699 6 83703508 to 83703514 6 - TSS region transcription start site region 61699
Cpgi17610 6 83703510 to 83703746 236 CpG island CpG island 17610
Gm27631 6 83703518 to 83703983 465 + unclassified non-coding RNA gene predicted gene, 27631
Tssr61700 6 83703528 to 83703533 5 - TSS region transcription start site region 61700
Tssr61701 6 83703541 to 83703554 13 - TSS region transcription start site region 61701
Cpgi17611 6 83710453 to 83712430 1977 CpG island CpG island 17611
Gm27893 6 83710739 to 83710932 193 + unclassified non-coding RNA gene predicted gene, 27893
Tssr61702 6 83710850 to 83710865 15 - TSS region transcription start site region 61702
Tssr57361 6 83711232 to 83711288 56 + TSS region transcription start site region 57361
Vax2 6 83711264 to 83738304 27040 + protein coding gene ventral anterior homeobox 2
Gm32943 6 83712798 to 83716382 3584 - lncRNA gene predicted gene, 32943
D6Mit8.2 6 83713824 to 83713940 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8.2
Bw18 6 83713869 to 83714031 162 QTL body weight QTL 18
D6Mit8 6 83713869 to 83714031 162 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8
D6Mit8.1 6 83714026 to 83714250 224 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8.1
Tssr57362 6 83714536 to 83714552 16 + TSS region transcription start site region 57362
Cpgi17612 6 83714566 to 83714897 331 CpG island CpG island 17612
Cpgi17613 6 83715681 to 83716371 690 CpG island CpG island 17613
Tssr57363 6 83716646 to 83716649 3 + TSS region transcription start site region 57363
Gm25054 6 83721296 to 83721392 96 + snRNA gene predicted gene, 25054
Tssr57364 6 83742984 to 83742995 11 + TSS region transcription start site region 57364
Tssr57365 6 83743010 to 83743038 28 + TSS region transcription start site region 57365
Atp6v1b1 6 83743017 to 83758810 15793 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit B1
Tssr57366 6 83743040 to 83743065 25 + TSS region transcription start site region 57366
Cpgi17614 6 83757907 to 83758573 666 CpG island CpG island 17614
Tssr57367 6 83758632 to 83758644 12 + TSS region transcription start site region 57367
Tssr57368 6 83758768 to 83758779 11 + TSS region transcription start site region 57368
Tssr57369 6 83758793 to 83758803 10 + TSS region transcription start site region 57369
Tssr57370 6 83758847 to 83758865 18 + TSS region transcription start site region 57370
Tssr57371 6 83758911 to 83758920 9 + TSS region transcription start site region 57371
Tssr57372 6 83758923 to 83758935 12 + TSS region transcription start site region 57372
1700124L16Rik 6 83761759 to 83762508 749 - antisense lncRNA gene RIKEN cDNA 1700124L16 gene
Cpgi17615 6 83761899 to 83762064 165 CpG island CpG island 17615
Tssr61703 6 83762488 to 83762498 10 - TSS region transcription start site region 61703
Tssr61704 6 83762503 to 83762511 8 - TSS region transcription start site region 61704
Ankrd53 6 83762646 to 83768326 5680 + protein coding gene ankyrin repeat domain 53
Tssr57373 6 83762665 to 83762692 27 + TSS region transcription start site region 57373
Cpgi17616 6 83762700 to 83763376 676 CpG island CpG island 17616
Tssr57374 6 83762701 to 83762710 9 + TSS region transcription start site region 57374
Tex261 6 83768885 to 83775813 6928 - protein coding gene testis expressed gene 261
Cpgi17617 6 83775065 to 83776235 1170 CpG island CpG island 17617
Tssr61705 6 83775560 to 83775569 9 - TSS region transcription start site region 61705
Tssr61706 6 83775575 to 83775580 5 - TSS region transcription start site region 61706
Tssr61707 6 83775582 to 83775597 15 - TSS region transcription start site region 61707
Tssr61708 6 83775610 to 83775615 5 - TSS region transcription start site region 61708
Tssr57375 6 83775638 to 83775651 13 + TSS region transcription start site region 57375
Tssr61709 6 83775669 to 83775676 7 - TSS region transcription start site region 61709
Tssr61710 6 83775746 to 83775759 13 - TSS region transcription start site region 61710
Tssr61711 6 83775767 to 83775826 59 - TSS region transcription start site region 61711
Tssr1911 6 83775928 to 83775941 13 + TSS region transcription start site region 1911
Gm7443 6 83792602 to 83792979 377 - pseudogene predicted gene 7443
Cpgi17618 6 83794637 to 83795786 1149 CpG island CpG island 17618
Tssr57376 6 83794974 to 83794985 11 + TSS region transcription start site region 57376
Tssr57377 6 83795002 to 83795015 13 + TSS region transcription start site region 57377
Nagk 6 83795005 to 83802556 7551 + protein coding gene N-acetylglucosamine kinase
Tssr57378 6 83795022 to 83795034 12 + TSS region transcription start site region 57378
Tssr57379 6 83795158 to 83795169 11 + TSS region transcription start site region 57379
Tssr57380 6 83795182 to 83795204 22 + TSS region transcription start site region 57380
Tssr57381 6 83795205 to 83795238 33 + TSS region transcription start site region 57381
Tssr57382 6 83795246 to 83795255 9 + TSS region transcription start site region 57382
Paip2b 6 83806058 to 83831741 25683 - protein coding gene poly(A) binding protein interacting protein 2B
Cpgi17619 6 83831202 to 83831978 776 CpG island CpG island 17619
Tssr61712 6 83831683 to 83831702 19 - TSS region transcription start site region 61712
Tssr61713 6 83831705 to 83831720 15 - TSS region transcription start site region 61713
Tssr61714 6 83831736 to 83831750 14 - TSS region transcription start site region 61714
Gm23014 6 83836937 to 83837066 129 - snoRNA gene predicted gene, 23014
Tssr57383 6 83841643 to 83841649 6 + TSS region transcription start site region 57383
Gm5312 6 83841682 to 83842228 546 + pseudogene predicted gene 5312
Gm6342 6 83844439 to 83845125 686 - pseudogene predicted gene 6342
Tssr61715 6 83845117 to 83845127 10 - TSS region transcription start site region 61715
Cpgi17620 6 83866948 to 83867682 734 CpG island CpG island 17620
Zfp638 6 83867100 to 83986871 119771 + protein coding gene zinc finger protein 638
Tssr57384 6 83867103 to 83867125 22 + TSS region transcription start site region 57384
Tssr57385 6 83867132 to 83867143 11 + TSS region transcription start site region 57385
Tssr57386 6 83867417 to 83867423 6 + TSS region transcription start site region 57386
Gm44750 6 83870065 to 83872287 2222 + unclassified gene predicted gene 44750
Gm5138 6 83874379 to 83875380 1001 - pseudogene predicted gene 5138
Tssr61716 6 83888610 to 83888617 7 - TSS region transcription start site region 61716
Tssr61717 6 83892846 to 83892870 24 - TSS region transcription start site region 61717
Gm43919 6 83896959 to 83897322 363 + pseudogene predicted gene, 43919
Cpgi17621 6 83914159 to 83915154 995 CpG island CpG island 17621
Tssr57387 6 83914354 to 83914411 57 + TSS region transcription start site region 57387
Tssr57388 6 83953873 to 83953876 3 + TSS region transcription start site region 57388
Gm43920 6 83962277 to 83965048 2771 + sense intronic lncRNA gene predicted gene, 43920
Tssr57389 6 83978288 to 83978293 5 + TSS region transcription start site region 57389
Tssr57390 6 84008337 to 84008357 20 + TSS region transcription start site region 57390
Tssr57391 6 84008362 to 84008404 42 + TSS region transcription start site region 57391
Cpgi17622 6 84008376 to 84009100 724 CpG island CpG island 17622
Tssr57392 6 84008515 to 84008533 18 + TSS region transcription start site region 57392
Tssr57393 6 84008540 to 84008557 17 + TSS region transcription start site region 57393
Dysf 6 84008590 to 84211060 202470 + protein coding gene dysferlin
Tssr57394 6 84008634 to 84008645 11 + TSS region transcription start site region 57394
Tssr57395 6 84008737 to 84008753 16 + TSS region transcription start site region 57395
Tssr57396 6 84008804 to 84008815 11 + TSS region transcription start site region 57396
Gm33024 6 84008898 to 84012121 3223 - antisense lncRNA gene predicted gene, 33024
Tssr57397 6 84008936 to 84008946 10 + TSS region transcription start site region 57397
Tssr61718 6 84010091 to 84010094 3 - TSS region transcription start site region 61718
Cpgi17623 6 84018945 to 84019601 656 CpG island CpG island 17623
Tssr57398 6 84019346 to 84019351 5 + TSS region transcription start site region 57398
Tssr57399 6 84019364 to 84019383 19 + TSS region transcription start site region 57399
Tssr1912 6 84019394 to 84019406 12 + TSS region transcription start site region 1912
Gm7498 6 84031612 to 84032512 900 + pseudogene predicted gene 7498
Tssr57400 6 84088956 to 84088957 1 + TSS region transcription start site region 57400
Gm15475 6 84093772 to 84107007 13235 - antisense lncRNA gene predicted gene 15475
Cpgi17624 6 84105348 to 84106012 664 CpG island CpG island 17624
T2dm4sa 6 147052561 to 83713869 -63338692 QTL type 2 diabetes mellitus 4 in SMXA RI mice