Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:83228290-83478305

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc4a5 6 83219828 to 83304945 85117 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter, member 5
Tssr57339 6 83237521 to 83237561 40 + TSS region transcription start site region 57339
Tssr57340 6 83237562 to 83237580 18 + TSS region transcription start site region 57340
Tssr57341 6 83237649 to 83237661 12 + TSS region transcription start site region 57341
Tssr57342 6 83239239 to 83239279 40 + TSS region transcription start site region 57342
Tssr1907 6 83248647 to 83248649 2 + TSS region transcription start site region 1907
D6Mit211 6 83248935 to 83249081 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 211
D6Mit211.2 6 83249097 to 83249206 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 211.2
D6Mit360.1 6 83250477 to 83250612 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 360.1
D6Mit360 6 83250612 to 83250733 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 360
Cpgi17597 6 83268086 to 83268618 532 CpG island CpG island 17597
Tssr57343 6 83277355 to 83277364 9 + TSS region transcription start site region 57343
Tssr57344 6 83277375 to 83277416 41 + TSS region transcription start site region 57344
Mthfd2 6 83305691 to 83325908 20217 - protein coding gene methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase
Gm43890 6 83314145 to 83316943 2798 - unclassified gene predicted gene, 43890
Cpgi17598 6 83316986 to 83317743 757 CpG island CpG island 17598
Tssr57345 6 83317252 to 83317264 12 + TSS region transcription start site region 57345
Tssr61637 6 83317538 to 83317588 50 - TSS region transcription start site region 61637
Tssr61638 6 83317589 to 83317602 13 - TSS region transcription start site region 61638
D6UmiJ14 6 83321887 to 83322053 166 DNA segment DNA segment, Chr 6, University of Michigan Jones 14
Cpgi17599 6 83325717 to 83326599 882 CpG island CpG island 17599
Tssr61639 6 83325963 to 83325975 12 - TSS region transcription start site region 61639
Tssr57346 6 83326029 to 83326064 35 + TSS region transcription start site region 57346
Mob1a 6 83326035 to 83342812 16777 + protein coding gene MOB kinase activator 1A
Tssr57347 6 83326071 to 83326085 14 + TSS region transcription start site region 57347
Tssr61640 6 83326251 to 83326298 47 - TSS region transcription start site region 61640
Tssr57348 6 83327733 to 83327760 27 + TSS region transcription start site region 57348
Tssr57349 6 83341579 to 83341594 15 + TSS region transcription start site region 57349
Cpgi17600 6 83349068 to 83349840 772 CpG island CpG island 17600
Tssr57350 6 83349451 to 83349496 45 + TSS region transcription start site region 57350
Bola3 6 83349467 to 83358400 8933 + protein coding gene bolA-like 3 (E. coli)
Tssr57351 6 83351235 to 83351248 13 + TSS region transcription start site region 57351
Tssr57352 6 83351249 to 83351264 15 + TSS region transcription start site region 57352
Cpgi17601 6 83353145 to 83353351 206 CpG island CpG island 17601
Tssr57353 6 83353218 to 83353249 31 + TSS region transcription start site region 57353
Tssr57354 6 83353290 to 83353305 15 + TSS region transcription start site region 57354
Tssr61641 6 83362342 to 83362344 2 - TSS region transcription start site region 61641
Tet3 6 83362373 to 83457242 94869 - protein coding gene tet methylcytosine dioxygenase 3
Tssr61642 6 83367801 to 83367804 3 - TSS region transcription start site region 61642
Cpgi17602 6 83370451 to 83370816 365 CpG island CpG island 17602
Tssr61643 6 83386735 to 83386739 4 - TSS region transcription start site region 61643
Mir6374 6 83400996 to 83401102 106 - miRNA gene microRNA 6374
Tssr61644 6 83416618 to 83416623 5 - TSS region transcription start site region 61644
5430434F05Rik 6 83417440 to 83420992 3552 - unclassified gene RIKEN cDNA 5430434F05 gene
D6UmiJ15 6 83428540 to 83428654 114 DNA segment DNA segment, Chr 6, University of Michigan Jones 15
Tssr61645 6 83429086 to 83429104 18 - TSS region transcription start site region 61645
Cpgi17603 6 83440843 to 83442014 1171 CpG island CpG island 17603
Tssr61646 6 83441590 to 83441601 11 - TSS region transcription start site region 61646
Tssr61647 6 83441612 to 83441664 52 - TSS region transcription start site region 61647
Tssr61648 6 83441674 to 83441684 10 - TSS region transcription start site region 61648
B230319C09Rik 6 83441755 to 83448322 6567 + lncRNA gene RIKEN cDNA B230319C09 gene
Tssr61649 6 83442698 to 83442724 26 - TSS region transcription start site region 61649
Tssr61650 6 83452791 to 83452794 3 - TSS region transcription start site region 61650
Tssr61651 6 83455454 to 83455472 18 - TSS region transcription start site region 61651
Tssr61652 6 83455474 to 83455512 38 - TSS region transcription start site region 61652
Cpgi17604 6 83455512 to 83457432 1920 CpG island CpG island 17604
Tssr61653 6 83456376 to 83456392 16 - TSS region transcription start site region 61653
Tssr61654 6 83456406 to 83456421 15 - TSS region transcription start site region 61654
Tssr61655 6 83456427 to 83456444 17 - TSS region transcription start site region 61655
Tssr61656 6 83456476 to 83456524 48 - TSS region transcription start site region 61656
Tssr61657 6 83456531 to 83456569 38 - TSS region transcription start site region 61657
Tssr61658 6 83456789 to 83456806 17 - TSS region transcription start site region 61658
Tssr61659 6 83456812 to 83456862 50 - TSS region transcription start site region 61659
Tssr61660 6 83457180 to 83457217 37 - TSS region transcription start site region 61660
Tssr61661 6 83457523 to 83457543 20 - TSS region transcription start site region 61661
D6UmiJ2 6 83457688 to 83457846 158 DNA segment DNA segment, Chr 6, University of Michigan Jones 2
Tssr61662 6 83459105 to 83459112 7 - TSS region transcription start site region 61662
D6Mit128 6 83471199 to 83471322 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 128
D6Mit1006 6 83471203 to 83471360 157 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1006