Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:83146123-86699996

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662 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax6 6 71322621 to 86275719 14953098 QTL ethanol induced ataxia 6
Rtkn 6 83135463 to 83152579 17116 + protein coding gene rhotekin
Tssr57312 6 83147473 to 83147515 42 + TSS region transcription start site region 57312
Wdr54 6 83152710 to 83156440 3730 - protein coding gene WD repeat domain 54
Cpgi17593 6 83155600 to 83156758 1158 CpG island CpG island 17593
Tssr61631 6 83155803 to 83155812 9 - TSS region transcription start site region 61631
Tssr61632 6 83155837 to 83155849 12 - TSS region transcription start site region 61632
Tssr61633 6 83156353 to 83156387 34 - TSS region transcription start site region 61633
Tssr61634 6 83156393 to 83156400 7 - TSS region transcription start site region 61634
Tssr57313 6 83156401 to 83156451 50 + TSS region transcription start site region 57313
Tssr61635 6 83156403 to 83156414 11 - TSS region transcription start site region 61635
1700003E16Rik 6 83156404 to 83162945 6541 + protein coding gene RIKEN cDNA 1700003E16 gene
Tssr57314 6 83156459 to 83156514 55 + TSS region transcription start site region 57314
Cpgi17594 6 83161375 to 83162558 1183 CpG island CpG island 17594
Tssr57315 6 83161792 to 83161804 12 + TSS region transcription start site region 57315
Cpgi17595 6 83165568 to 83166429 861 CpG island CpG island 17595
Dctn1 6 83165920 to 83200117 34197 + protein coding gene dynactin 1
Tssr57316 6 83165920 to 83165977 57 + TSS region transcription start site region 57316
Gm15624 6 83169109 to 83175258 6149 - antisense lncRNA gene predicted gene 15624
Tssr61636 6 83172742 to 83172769 27 - TSS region transcription start site region 61636
Tssr57317 6 83179568 to 83179630 62 + TSS region transcription start site region 57317
Tssr57318 6 83179637 to 83179650 13 + TSS region transcription start site region 57318
Tssr1906 6 83179666 to 83179681 15 + TSS region transcription start site region 1906
Tssr57319 6 83179701 to 83179702 1 + TSS region transcription start site region 57319
D6Umi3 6 83185222 to 83185403 181 DNA segment DNA segment, Chr 6, University of Michigan 3
Cpgi17596 6 83185999 to 83186434 435 CpG island CpG island 17596
Tssr57320 6 83186082 to 83186151 69 + TSS region transcription start site region 57320
Tssr57321 6 83186160 to 83186182 22 + TSS region transcription start site region 57321
Tssr57322 6 83186188 to 83186201 13 + TSS region transcription start site region 57322
Tssr57323 6 83186328 to 83186349 21 + TSS region transcription start site region 57323
Tssr57324 6 83188891 to 83188894 3 + TSS region transcription start site region 57324
Tssr57325 6 83188895 to 83188903 8 + TSS region transcription start site region 57325
Tssr57326 6 83188991 to 83189002 11 + TSS region transcription start site region 57326
Tssr57327 6 83189061 to 83189080 19 + TSS region transcription start site region 57327
Tssr57328 6 83189936 to 83189950 14 + TSS region transcription start site region 57328
Tssr57329 6 83195809 to 83195825 16 + TSS region transcription start site region 57329
Tssr57330 6 83195838 to 83195849 11 + TSS region transcription start site region 57330
Tssr57331 6 83195876 to 83195881 5 + TSS region transcription start site region 57331
Tssr57332 6 83195923 to 83195957 34 + TSS region transcription start site region 57332
Tssr57333 6 83195960 to 83195977 17 + TSS region transcription start site region 57333
Tssr57334 6 83195999 to 83196016 17 + TSS region transcription start site region 57334
Tssr57335 6 83196025 to 83196034 9 + TSS region transcription start site region 57335
Tssr57336 6 83206094 to 83206104 10 + TSS region transcription start site region 57336
Tssr57337 6 83206118 to 83206130 12 + TSS region transcription start site region 57337
Tssr57338 6 83207593 to 83207606 13 + TSS region transcription start site region 57338
Slc4a5 6 83219828 to 83304945 85117 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter, member 5
D6Umi4 6 83222276 to 83222458 182 DNA segment DNA segment, Chr 6, University of Michigan 4
Tssr57339 6 83237521 to 83237561 40 + TSS region transcription start site region 57339
Tssr57340 6 83237562 to 83237580 18 + TSS region transcription start site region 57340
Tssr57341 6 83237649 to 83237661 12 + TSS region transcription start site region 57341
Tssr57342 6 83239239 to 83239279 40 + TSS region transcription start site region 57342
Tssr1907 6 83248647 to 83248649 2 + TSS region transcription start site region 1907
D6Mit211 6 83248935 to 83249081 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 211
D6Mit211.2 6 83249097 to 83249206 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 211.2
D6Mit360.1 6 83250477 to 83250612 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 360.1
D6Mit360 6 83250612 to 83250733 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 360
Cpgi17597 6 83268086 to 83268618 532 CpG island CpG island 17597
Tssr57343 6 83277355 to 83277364 9 + TSS region transcription start site region 57343
Tssr57344 6 83277375 to 83277416 41 + TSS region transcription start site region 57344
Mthfd2 6 83305691 to 83325908 20217 - protein coding gene methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase
Gm43890 6 83314145 to 83316943 2798 - unclassified gene predicted gene, 43890
Cpgi17598 6 83316986 to 83317743 757 CpG island CpG island 17598
Tssr57345 6 83317252 to 83317264 12 + TSS region transcription start site region 57345
Tssr61637 6 83317538 to 83317588 50 - TSS region transcription start site region 61637
Tssr61638 6 83317589 to 83317602 13 - TSS region transcription start site region 61638
D6UmiJ14 6 83321887 to 83322053 166 DNA segment DNA segment, Chr 6, University of Michigan Jones 14
Cpgi17599 6 83325717 to 83326599 882 CpG island CpG island 17599
Tssr61639 6 83325963 to 83325975 12 - TSS region transcription start site region 61639
Tssr57346 6 83326029 to 83326064 35 + TSS region transcription start site region 57346
Mob1a 6 83326035 to 83342812 16777 + protein coding gene MOB kinase activator 1A
Tssr57347 6 83326071 to 83326085 14 + TSS region transcription start site region 57347
Tssr61640 6 83326251 to 83326298 47 - TSS region transcription start site region 61640
Tssr57348 6 83327733 to 83327760 27 + TSS region transcription start site region 57348
Tssr57349 6 83341579 to 83341594 15 + TSS region transcription start site region 57349
Cpgi17600 6 83349068 to 83349840 772 CpG island CpG island 17600
Tssr57350 6 83349451 to 83349496 45 + TSS region transcription start site region 57350
Bola3 6 83349467 to 83358400 8933 + protein coding gene bolA-like 3 (E. coli)
Tssr57351 6 83351235 to 83351248 13 + TSS region transcription start site region 57351
Tssr57352 6 83351249 to 83351264 15 + TSS region transcription start site region 57352
Cpgi17601 6 83353145 to 83353351 206 CpG island CpG island 17601
Tssr57353 6 83353218 to 83353249 31 + TSS region transcription start site region 57353
Tssr57354 6 83353290 to 83353305 15 + TSS region transcription start site region 57354
Tssr61641 6 83362342 to 83362344 2 - TSS region transcription start site region 61641
Tet3 6 83362373 to 83457242 94869 - protein coding gene tet methylcytosine dioxygenase 3
Tssr61642 6 83367801 to 83367804 3 - TSS region transcription start site region 61642
Cpgi17602 6 83370451 to 83370816 365 CpG island CpG island 17602
Tssr61643 6 83386735 to 83386739 4 - TSS region transcription start site region 61643
Mir6374 6 83400996 to 83401102 106 - miRNA gene microRNA 6374
Tssr61644 6 83416618 to 83416623 5 - TSS region transcription start site region 61644
5430434F05Rik 6 83417440 to 83420992 3552 - unclassified gene RIKEN cDNA 5430434F05 gene
D6UmiJ15 6 83428540 to 83428654 114 DNA segment DNA segment, Chr 6, University of Michigan Jones 15
Tssr61645 6 83429086 to 83429104 18 - TSS region transcription start site region 61645
Cpgi17603 6 83440843 to 83442014 1171 CpG island CpG island 17603
Tssr61646 6 83441590 to 83441601 11 - TSS region transcription start site region 61646
Tssr61647 6 83441612 to 83441664 52 - TSS region transcription start site region 61647
Tssr61648 6 83441674 to 83441684 10 - TSS region transcription start site region 61648
B230319C09Rik 6 83441755 to 83448322 6567 + lncRNA gene RIKEN cDNA B230319C09 gene
Tssr61649 6 83442698 to 83442724 26 - TSS region transcription start site region 61649
Tssr61650 6 83452791 to 83452794 3 - TSS region transcription start site region 61650
Tssr61651 6 83455454 to 83455472 18 - TSS region transcription start site region 61651
Tssr61652 6 83455474 to 83455512 38 - TSS region transcription start site region 61652
Cpgi17604 6 83455512 to 83457432 1920 CpG island CpG island 17604
Tssr61653 6 83456376 to 83456392 16 - TSS region transcription start site region 61653
Tssr61654 6 83456406 to 83456421 15 - TSS region transcription start site region 61654
Tssr61655 6 83456427 to 83456444 17 - TSS region transcription start site region 61655
Tssr61656 6 83456476 to 83456524 48 - TSS region transcription start site region 61656
Tssr61657 6 83456531 to 83456569 38 - TSS region transcription start site region 61657
Tssr61658 6 83456789 to 83456806 17 - TSS region transcription start site region 61658
Tssr61659 6 83456812 to 83456862 50 - TSS region transcription start site region 61659
Tssr61660 6 83457180 to 83457217 37 - TSS region transcription start site region 61660
Tssr61661 6 83457523 to 83457543 20 - TSS region transcription start site region 61661
D6UmiJ2 6 83457688 to 83457846 158 DNA segment DNA segment, Chr 6, University of Michigan Jones 2
Tssr61662 6 83459105 to 83459112 7 - TSS region transcription start site region 61662
D6Mit128 6 83471199 to 83471322 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 128
D6Mit1006 6 83471203 to 83471360 157 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1006
Dguok 6 83480217 to 83506969 26752 - protein coding gene deoxyguanosine kinase
Tssr61663 6 83506256 to 83506260 4 - TSS region transcription start site region 61663
Cpgi17605 6 83506502 to 83507386 884 CpG island CpG island 17605
Tssr61664 6 83506816 to 83506823 7 - TSS region transcription start site region 61664
Tssr61665 6 83506830 to 83506835 5 - TSS region transcription start site region 61665
Tssr61666 6 83506838 to 83506850 12 - TSS region transcription start site region 61666
Tssr61667 6 83506865 to 83506876 11 - TSS region transcription start site region 61667
Tssr61668 6 83506889 to 83506894 5 - TSS region transcription start site region 61668
Tssr61669 6 83506895 to 83506927 32 - TSS region transcription start site region 61669
Tssr1908 6 83507081 to 83507106 25 + TSS region transcription start site region 1908
Actg2 6 83512909 to 83536251 23342 - protein coding gene actin, gamma 2, smooth muscle, enteric
Tssr61670 6 83512934 to 83512974 40 - TSS region transcription start site region 61670
Tssr61671 6 83520755 to 83520768 13 - TSS region transcription start site region 61671
Tssr57355 6 83523166 to 83523186 20 + TSS region transcription start site region 57355
Tssr57356 6 83523191 to 83523240 49 + TSS region transcription start site region 57356
Tssr61672 6 83523199 to 83523216 17 - TSS region transcription start site region 61672
Tssr61673 6 83523219 to 83523240 21 - TSS region transcription start site region 61673
Tssr61674 6 83526879 to 83526898 19 - TSS region transcription start site region 61674
Tssr61675 6 83526915 to 83526933 18 - TSS region transcription start site region 61675
Tssr61676 6 83527345 to 83527358 13 - TSS region transcription start site region 61676
Tssr61677 6 83527366 to 83527373 7 - TSS region transcription start site region 61677
Tssr61678 6 83527452 to 83527500 48 - TSS region transcription start site region 61678
Tssr61679 6 83527773 to 83527807 34 - TSS region transcription start site region 61679
Tssr61680 6 83527986 to 83527993 7 - TSS region transcription start site region 61680
Tssr61681 6 83528968 to 83528973 5 - TSS region transcription start site region 61681
Gm38844 6 83531677 to 83547236 15559 + lncRNA gene predicted gene, 38844
D6UmiJ1 6 83535227 to 83535383 156 DNA segment DNA segment, Chr 6, University of Michigan Jones 1
Tssr61682 6 83536000 to 83536015 15 - TSS region transcription start site region 61682
Tssr61683 6 83536027 to 83536034 7 - TSS region transcription start site region 61683
Tssr61684 6 83536215 to 83536230 15 - TSS region transcription start site region 61684
Tssr61685 6 83536240 to 83536270 30 - TSS region transcription start site region 61685
Tssr61686 6 83536399 to 83536434 35 - TSS region transcription start site region 61686
Tssr61687 6 83536469 to 83536476 7 - TSS region transcription start site region 61687
Tssr61688 6 83536523 to 83536541 18 - TSS region transcription start site region 61688
Tssr61689 6 83536549 to 83536552 3 - TSS region transcription start site region 61689
Tssr61690 6 83536556 to 83536569 13 - TSS region transcription start site region 61690
Tssr61691 6 83537120 to 83537130 10 - TSS region transcription start site region 61691
Tssr1909 6 83537142 to 83537149 7 - TSS region transcription start site region 1909
Tssr1910 6 83537155 to 83537164 9 - TSS region transcription start site region 1910
Stambp 6 83543211 to 83572729 29518 - protein coding gene STAM binding protein
Tssr57357 6 83544984 to 83544986 2 + TSS region transcription start site region 57357
Gm18537 6 83549398 to 83550381 983 - pseudogene predicted gene, 18537
Gm21284 6 83568039 to 83588123 20084 + antisense lncRNA gene predicted gene, 21284
Cpgi17606 6 83572118 to 83572580 462 CpG island CpG island 17606
Tssr61692 6 83572429 to 83572472 43 - TSS region transcription start site region 61692
Tssr61693 6 83575822 to 83575832 10 - TSS region transcription start site region 61693
Tssr61694 6 83575841 to 83575846 5 - TSS region transcription start site region 61694
Tssr57358 6 83575890 to 83575900 10 + TSS region transcription start site region 57358
Tssr57359 6 83575917 to 83575925 8 + TSS region transcription start site region 57359
Tssr57360 6 83575929 to 83575942 13 + TSS region transcription start site region 57360
Gm24990 6 83591821 to 83592143 322 - unclassified non-coding RNA gene predicted gene, 24990
Cpgi17607 6 83599029 to 83599281 252 CpG island CpG island 17607
Gm7424 6 83600807 to 83601708 901 - pseudogene predicted gene 7424
Cpgi17608 6 83626889 to 83627273 384 CpG island CpG island 17608
Tssr61695 6 83627202 to 83627249 47 - TSS region transcription start site region 61695
D6Mit247 6 83633400 to 83633541 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 247
Clec4f 6 83644542 to 83656116 11574 - protein coding gene C-type lectin domain family 4, member f
D6Mit69 6 83645707 to 83645868 161 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 69
Tssr61696 6 83656082 to 83656125 43 - TSS region transcription start site region 61696
Cd207 6 83671215 to 83677857 6642 - protein coding gene CD207 antigen
Tssr61697 6 83677807 to 83677812 5 - TSS region transcription start site region 61697
Vax2os 6 83692806 to 83712201 19395 - antisense lncRNA gene ventral anterior homeobox 2, opposite strand
Tssr61698 6 83698081 to 83698103 22 - TSS region transcription start site region 61698
Cpgi17609 6 83702191 to 83703094 903 CpG island CpG island 17609
Gm27772 6 83702491 to 83702677 186 + unclassified non-coding RNA gene predicted gene, 27772
Tssr61699 6 83703508 to 83703514 6 - TSS region transcription start site region 61699
Cpgi17610 6 83703510 to 83703746 236 CpG island CpG island 17610
Gm27631 6 83703518 to 83703983 465 + unclassified non-coding RNA gene predicted gene, 27631
Tssr61700 6 83703528 to 83703533 5 - TSS region transcription start site region 61700
Tssr61701 6 83703541 to 83703554 13 - TSS region transcription start site region 61701
Cpgi17611 6 83710453 to 83712430 1977 CpG island CpG island 17611
Gm27893 6 83710739 to 83710932 193 + unclassified non-coding RNA gene predicted gene, 27893
Tssr61702 6 83710850 to 83710865 15 - TSS region transcription start site region 61702
Tssr57361 6 83711232 to 83711288 56 + TSS region transcription start site region 57361
Vax2 6 83711264 to 83738304 27040 + protein coding gene ventral anterior homeobox 2
Gm32943 6 83712798 to 83716382 3584 - lncRNA gene predicted gene, 32943
D6Mit8.2 6 83713824 to 83713940 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8.2
D6Mit8 6 83713869 to 83714031 162 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8
Bw18 6 83713869 to 83714031 162 QTL body weight QTL 18
D6Mit8.1 6 83714026 to 83714250 224 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 8.1
Tssr57362 6 83714536 to 83714552 16 + TSS region transcription start site region 57362
Cpgi17612 6 83714566 to 83714897 331 CpG island CpG island 17612
Cpgi17613 6 83715681 to 83716371 690 CpG island CpG island 17613
Tssr57363 6 83716646 to 83716649 3 + TSS region transcription start site region 57363
Gm25054 6 83721296 to 83721392 96 + snRNA gene predicted gene, 25054