Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:83086375-83237558

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17584 6 83086275 to 83087005 730 CpG island CpG island 17584
Lbx2 6 83086365 to 83088241 1876 + protein coding gene ladybird homeobox 2
D6UmiJ4 6 83086615 to 83086743 128 DNA segment DNA segment, Chr 6, University of Michigan Jones 4
Tssr57291 6 83087278 to 83087328 50 + TSS region transcription start site region 57291
Cpgi17585 6 83087355 to 83088070 715 CpG island CpG island 17585
Mir3470a 6 83090311 to 83090387 76 - miRNA gene microRNA 3470a
D6UmiJ5 6 83096717 to 83096901 184 DNA segment DNA segment, Chr 6, University of Michigan Jones 5
Cpgi17586 6 83101238 to 83102598 1360 CpG island CpG island 17586
Tssr57292 6 83101565 to 83101609 44 + TSS region transcription start site region 57292
Ccdc142 6 83101601 to 83108394 6793 + protein coding gene coiled-coil domain containing 142
Gm42688 6 83101617 to 83109939 8322 + protein coding gene predicted gene 42688
Ccdc142os 6 83106608 to 83109054 2446 - antisense lncRNA gene coiled-coil domain containing 142, opposite strand
Cpgi17587 6 83108755 to 83109793 1038 CpG island CpG island 17587
Tssr57293 6 83108947 to 83108980 33 + TSS region transcription start site region 57293
Tssr57294 6 83109071 to 83109114 43 + TSS region transcription start site region 57294
Mrpl53 6 83109108 to 83109932 824 + protein coding gene mitochondrial ribosomal protein L53
Tssr57295 6 83109250 to 83109277 27 + TSS region transcription start site region 57295
Cpgi17588 6 83115075 to 83116342 1267 CpG island CpG island 17588
Tssr61619 6 83115389 to 83115397 8 - TSS region transcription start site region 61619
Tssr61620 6 83115412 to 83115476 64 - TSS region transcription start site region 61620
Tssr57296 6 83115495 to 83115574 79 + TSS region transcription start site region 57296
Mogs 6 83115506 to 83118902 3396 + protein coding gene mannosyl-oligosaccharide glucosidase
Tssr57297 6 83117712 to 83117732 20 + TSS region transcription start site region 57297
Wbp1 6 83119044 to 83121461 2417 - protein coding gene WW domain binding protein 1
Cpgi17589 6 83121211 to 83122657 1446 CpG island CpG island 17589
Tssr61621 6 83121385 to 83121470 85 - TSS region transcription start site region 61621
Tssr57298 6 83121705 to 83121730 25 + TSS region transcription start site region 57298
Tssr57299 6 83121734 to 83121751 17 + TSS region transcription start site region 57299
Ino80b 6 83121828 to 83125029 3201 - protein coding gene INO80 complex subunit B
Tssr61622 6 83122024 to 83122069 45 - TSS region transcription start site region 61622
Gm44287 6 83122520 to 83124397 1877 + antisense lncRNA gene predicted gene, 44287
D6UmiJ27 6 83123686 to 83123850 164 DNA segment DNA segment, Chr 6, University of Michigan Jones 27
Cpgi17590 6 83124743 to 83125267 524 CpG island CpG island 17590
Tssr61623 6 83124768 to 83124779 11 - TSS region transcription start site region 61623
Tssr61624 6 83124829 to 83124843 14 - TSS region transcription start site region 61624
Tssr61625 6 83124844 to 83124899 55 - TSS region transcription start site region 61625
Tssr61626 6 83125072 to 83125135 63 - TSS region transcription start site region 61626
Tssr61627 6 83125137 to 83125146 9 - TSS region transcription start site region 61627
Tssr61628 6 83125156 to 83125167 11 - TSS region transcription start site region 61628
Tssr61629 6 83125186 to 83125199 13 - TSS region transcription start site region 61629
D6UmiJ9 6 83134643 to 83134799 156 DNA segment DNA segment, Chr 6, University of Michigan Jones 9
Rtkn 6 83135463 to 83152579 17116 + protein coding gene rhotekin
Cpgi17591 6 83135681 to 83136285 604 CpG island CpG island 17591
Tssr57300 6 83135828 to 83135874 46 + TSS region transcription start site region 57300
Tssr57301 6 83135892 to 83135903 11 + TSS region transcription start site region 57301
D6UmiJ11 6 83136476 to 83136645 169 DNA segment DNA segment, Chr 6, University of Michigan Jones 11
Tssr57302 6 83137040 to 83137059 19 + TSS region transcription start site region 57302
Tssr57303 6 83137103 to 83137121 18 + TSS region transcription start site region 57303
Tssr57304 6 83137134 to 83137152 18 + TSS region transcription start site region 57304
Tssr57305 6 83137368 to 83137400 32 + TSS region transcription start site region 57305
Tssr57306 6 83137804 to 83137837 33 + TSS region transcription start site region 57306
Tssr57307 6 83137838 to 83137846 8 + TSS region transcription start site region 57307
Tssr57308 6 83137850 to 83137866 16 + TSS region transcription start site region 57308
Tssr57309 6 83137919 to 83137941 22 + TSS region transcription start site region 57309
Cpgi17592 6 83141846 to 83142994 1148 CpG island CpG island 17592
Tssr57310 6 83142387 to 83142429 42 + TSS region transcription start site region 57310
Tssr61630 6 83143258 to 83143264 6 - TSS region transcription start site region 61630
Tssr57311 6 83145888 to 83145937 49 + TSS region transcription start site region 57311
Tssr57312 6 83147473 to 83147515 42 + TSS region transcription start site region 57312
Wdr54 6 83152710 to 83156440 3730 - protein coding gene WD repeat domain 54
Cpgi17593 6 83155600 to 83156758 1158 CpG island CpG island 17593
Tssr61631 6 83155803 to 83155812 9 - TSS region transcription start site region 61631
Tssr61632 6 83155837 to 83155849 12 - TSS region transcription start site region 61632
Tssr61633 6 83156353 to 83156387 34 - TSS region transcription start site region 61633
Tssr61634 6 83156393 to 83156400 7 - TSS region transcription start site region 61634
Tssr57313 6 83156401 to 83156451 50 + TSS region transcription start site region 57313
Tssr61635 6 83156403 to 83156414 11 - TSS region transcription start site region 61635
1700003E16Rik 6 83156404 to 83162945 6541 + protein coding gene RIKEN cDNA 1700003E16 gene
Tssr57314 6 83156459 to 83156514 55 + TSS region transcription start site region 57314
Cpgi17594 6 83161375 to 83162558 1183 CpG island CpG island 17594
Tssr57315 6 83161792 to 83161804 12 + TSS region transcription start site region 57315
Cpgi17595 6 83165568 to 83166429 861 CpG island CpG island 17595
Dctn1 6 83165920 to 83200117 34197 + protein coding gene dynactin 1
Tssr57316 6 83165920 to 83165977 57 + TSS region transcription start site region 57316
Gm15624 6 83169109 to 83175258 6149 - antisense lncRNA gene predicted gene 15624
Tssr61636 6 83172742 to 83172769 27 - TSS region transcription start site region 61636
Tssr57317 6 83179568 to 83179630 62 + TSS region transcription start site region 57317
Tssr57318 6 83179637 to 83179650 13 + TSS region transcription start site region 57318
Tssr1906 6 83179666 to 83179681 15 + TSS region transcription start site region 1906
Tssr57319 6 83179701 to 83179702 1 + TSS region transcription start site region 57319
D6Umi3 6 83185222 to 83185403 181 DNA segment DNA segment, Chr 6, University of Michigan 3
Cpgi17596 6 83185999 to 83186434 435 CpG island CpG island 17596
Tssr57320 6 83186082 to 83186151 69 + TSS region transcription start site region 57320
Tssr57321 6 83186160 to 83186182 22 + TSS region transcription start site region 57321
Tssr57322 6 83186188 to 83186201 13 + TSS region transcription start site region 57322
Tssr57323 6 83186328 to 83186349 21 + TSS region transcription start site region 57323
Tssr57324 6 83188891 to 83188894 3 + TSS region transcription start site region 57324
Tssr57325 6 83188895 to 83188903 8 + TSS region transcription start site region 57325
Tssr57326 6 83188991 to 83189002 11 + TSS region transcription start site region 57326
Tssr57327 6 83189061 to 83189080 19 + TSS region transcription start site region 57327
Tssr57328 6 83189936 to 83189950 14 + TSS region transcription start site region 57328
Tssr57329 6 83195809 to 83195825 16 + TSS region transcription start site region 57329
Tssr57330 6 83195838 to 83195849 11 + TSS region transcription start site region 57330
Tssr57331 6 83195876 to 83195881 5 + TSS region transcription start site region 57331
Tssr57332 6 83195923 to 83195957 34 + TSS region transcription start site region 57332
Tssr57333 6 83195960 to 83195977 17 + TSS region transcription start site region 57333
Tssr57334 6 83195999 to 83196016 17 + TSS region transcription start site region 57334
Tssr57335 6 83196025 to 83196034 9 + TSS region transcription start site region 57335
Tssr57336 6 83206094 to 83206104 10 + TSS region transcription start site region 57336
Tssr57337 6 83206118 to 83206130 12 + TSS region transcription start site region 57337
Tssr57338 6 83207593 to 83207606 13 + TSS region transcription start site region 57338
Slc4a5 6 83219828 to 83304945 85117 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter, member 5
D6Umi4 6 83222276 to 83222458 182 DNA segment DNA segment, Chr 6, University of Michigan 4
Tssr57339 6 83237521 to 83237561 40 + TSS region transcription start site region 57339