Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:82501123-87344996

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963 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax6 6 71322621 to 86275719 14953098 QTL ethanol induced ataxia 6
Tacr1 6 82402334 to 82560104 157770 + protein coding gene tachykinin receptor 1
Pole4 6 82618924 to 82652933 34009 - protein coding gene polymerase (DNA-directed), epsilon 4 (p12 subunit)
Cpgi17574 6 82652395 to 82653318 923 CpG island CpG island 17574
Tssr61578 6 82652466 to 82652485 19 - TSS region transcription start site region 61578
Tssr61579 6 82652491 to 82652554 63 - TSS region transcription start site region 61579
Tssr57259 6 82652625 to 82652646 21 + TSS region transcription start site region 57259
Tssr61580 6 82652856 to 82652881 25 - TSS region transcription start site region 61580
D6Mit129 6 82656248 to 82656387 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 129
D6Mit129.1 6 82656308 to 82656520 212 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 129.1
Gm32425 6 82679673 to 82706283 26610 + lncRNA gene predicted gene, 32425
Gm44145 6 82680132 to 82694822 14690 + antisense lncRNA gene predicted gene, 44145
Tssr61581 6 82688383 to 82688403 20 - TSS region transcription start site region 61581
Tssr61582 6 82688452 to 82688458 6 - TSS region transcription start site region 61582
Cpgi17575 6 82702774 to 82702928 154 CpG island CpG island 17575
Tssr61583 6 82705267 to 82705284 17 - TSS region transcription start site region 61583
Tssr61584 6 82705328 to 82705338 10 - TSS region transcription start site region 61584
Tssr61585 6 82705352 to 82705386 34 - TSS region transcription start site region 61585
Gm32534 6 82710743 to 82714807 4064 - lncRNA gene predicted gene, 32534
Gm32480 6 82714385 to 82715969 1584 + lncRNA gene predicted gene, 32480
Hk2 6 82725025 to 82774454 49429 - protein coding gene hexokinase 2
Tssr61586 6 82726648 to 82726657 9 - TSS region transcription start site region 61586
Tssr61587 6 82730839 to 82730851 12 - TSS region transcription start site region 61587
Tssr61588 6 82737280 to 82737304 24 - TSS region transcription start site region 61588
Tssr57260 6 82737366 to 82737367 1 + TSS region transcription start site region 57260
Tssr61589 6 82751866 to 82751880 14 - TSS region transcription start site region 61589
Tssr61590 6 82752735 to 82752739 4 - TSS region transcription start site region 61590
Tssr61591 6 82754033 to 82754054 21 - TSS region transcription start site region 61591
Tssr61592 6 82760139 to 82760182 43 - TSS region transcription start site region 61592
Tssr61593 6 82760822 to 82760845 23 - TSS region transcription start site region 61593
Gm17034 6 82764282 to 82767288 3006 + antisense lncRNA gene predicted gene 17034
D6Mit164 6 82766161 to 82766305 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 164
Cpgi17576 6 82773171 to 82774942 1771 CpG island CpG island 17576
Tssr61594 6 82774427 to 82774444 17 - TSS region transcription start site region 61594
Tssr61595 6 82774448 to 82774463 15 - TSS region transcription start site region 61595
Tssr1903 6 82780500 to 82780541 41 - TSS region transcription start site region 1903
Tssr1904 6 82780928 to 82780971 43 - TSS region transcription start site region 1904
Gm38843 6 82803769 to 82805083 1314 - lincRNA gene predicted gene, 38843
Tssr61596 6 82805067 to 82805077 10 - TSS region transcription start site region 61596
Tssr1905 6 82805088 to 82805109 21 - TSS region transcription start site region 1905
Tssr61597 6 82824319 to 82824339 20 - TSS region transcription start site region 61597
Gm32591 6 82831265 to 82841391 10126 + lincRNA gene predicted gene, 32591
D6UmiJ20 6 82856673 to 82856811 138 DNA segment DNA segment, Chr 6, University of Michigan Jones 20
Tssr61598 6 82857656 to 82857690 34 - TSS region transcription start site region 61598
D6Mit283 6 82874997 to 82875116 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 283
2310069B03Rik 6 82877866 to 82881853 3987 - lincRNA gene RIKEN cDNA 2310069B03 gene
Cpgi17577 6 82881751 to 82881956 205 CpG island CpG island 17577
Tssr61599 6 82883858 to 82883864 6 - TSS region transcription start site region 61599
D6Umi10 6 82884690 to 82884824 134 DNA segment DNA segment, Chr 6, University of Michigan 10
Gm6312 6 82887516 to 82888709 1193 - pseudogene predicted gene 6312
Gm45145 6 82896867 to 82905214 8347 - lincRNA gene predicted gene 45145
Tssr61600 6 82905192 to 82905206 14 - TSS region transcription start site region 61600
Sema4f 6 82911885 to 82939769 27884 - protein coding gene sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
D6UmiJ23 6 82912428 to 82912559 131 DNA segment DNA segment, Chr 6, University of Michigan Jones 23
Cpgi17578 6 82939108 to 82939857 749 CpG island CpG island 17578
Tssr61601 6 82939559 to 82939587 28 - TSS region transcription start site region 61601
Tssr61602 6 82939634 to 82939652 18 - TSS region transcription start site region 61602
Tssr61603 6 82939676 to 82939760 84 - TSS region transcription start site region 61603
Tssr57261 6 82946898 to 82946924 26 + TSS region transcription start site region 57261
M1ap 6 82946908 to 83030309 83401 + protein coding gene meiosis 1 associated protein
Tssr57262 6 82952737 to 82952743 6 + TSS region transcription start site region 57262
Gm19287 6 82952780 to 82953136 356 + pseudogene predicted gene, 19287
Tssr57263 6 82960209 to 82960218 9 + TSS region transcription start site region 57263
Tssr57264 6 82960241 to 82960252 11 + TSS region transcription start site region 57264
Tssr57265 6 82960269 to 82960278 9 + TSS region transcription start site region 57265
Tssr57266 6 82960540 to 82960547 7 + TSS region transcription start site region 57266
D6UmiJ16 6 82968302 to 82968462 160 DNA segment DNA segment, Chr 6, University of Michigan Jones 16
D6Mit189 6 82985330 to 82985480 150 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 189
Gm43985 6 82990823 to 82991579 756 - pseudogene predicted gene, 43985
Gm43981 6 82991645 to 82993111 1466 + unclassified gene predicted gene, 43981
Tssr57267 6 82998829 to 82998830 1 + TSS region transcription start site region 57267
Tssr61604 6 83004932 to 83004972 40 - TSS region transcription start site region 61604
Tssr57268 6 83005846 to 83005873 27 + TSS region transcription start site region 57268
Tssr57269 6 83006260 to 83006281 21 + TSS region transcription start site region 57269
Gm32644 6 83008181 to 83022898 14717 - lncRNA gene predicted gene, 32644
Tssr57270 6 83008917 to 83008931 14 + TSS region transcription start site region 57270
D6UmiJ18 6 83012200 to 83012353 153 DNA segment DNA segment, Chr 6, University of Michigan Jones 18
Tssr57271 6 83014693 to 83014697 4 + TSS region transcription start site region 57271
Tssr57272 6 83015278 to 83015317 39 + TSS region transcription start site region 57272
Tssr57273 6 83026272 to 83026305 33 + TSS region transcription start site region 57273
D6UmiJ19 6 83028842 to 83028968 126 DNA segment DNA segment, Chr 6, University of Michigan Jones 19
Dok1 6 83030934 to 83033471 2537 - protein coding gene docking protein 1
Cpgi17579 6 83032596 to 83034017 1421 CpG island CpG island 17579
Tssr57274 6 83032805 to 83032820 15 + TSS region transcription start site region 57274
Tssr61605 6 83033200 to 83033211 11 - TSS region transcription start site region 61605
Tssr61606 6 83033336 to 83033347 11 - TSS region transcription start site region 61606
Tssr61607 6 83033367 to 83033378 11 - TSS region transcription start site region 61607
Tssr61608 6 83033398 to 83033409 11 - TSS region transcription start site region 61608
Tssr61609 6 83033412 to 83033419 7 - TSS region transcription start site region 61609
Tssr61610 6 83033422 to 83033476 54 - TSS region transcription start site region 61610
Tssr57275 6 83034188 to 83034252 64 + TSS region transcription start site region 57275
Loxl3 6 83034224 to 83052564 18340 + protein coding gene lysyl oxidase-like 3
Cpgi17580 6 83038622 to 83038970 348 CpG island CpG island 17580
Tssr57276 6 83039276 to 83039283 7 + TSS region transcription start site region 57276
D6UmiJ26 6 83048166 to 83048349 183 DNA segment DNA segment, Chr 6, University of Michigan Jones 26
Tssr57277 6 83048523 to 83048528 5 + TSS region transcription start site region 57277
Mir7040 6 83049711 to 83049773 62 + miRNA gene microRNA 7040
Htra2 6 83051266 to 83054571 3305 - protein coding gene HtrA serine peptidase 2
Tssr57278 6 83051269 to 83051285 16 + TSS region transcription start site region 57278
Cpgi17581 6 83053510 to 83055416 1906 CpG island CpG island 17581
Tssr61611 6 83053677 to 83053693 16 - TSS region transcription start site region 61611
Tssr61612 6 83053722 to 83053773 51 - TSS region transcription start site region 61612
Tssr61613 6 83053778 to 83053828 50 - TSS region transcription start site region 61613
Tssr57279 6 83053873 to 83053893 20 + TSS region transcription start site region 57279
Tssr61614 6 83054331 to 83054342 11 - TSS region transcription start site region 61614
Tssr61615 6 83054379 to 83054409 30 - TSS region transcription start site region 61615
Tssr61616 6 83054415 to 83054485 70 - TSS region transcription start site region 61616
Aup1 6 83054521 to 83057682 3161 + protein coding gene ancient ubiquitous protein 1
Tssr57280 6 83054722 to 83054739 17 + TSS region transcription start site region 57280
Tssr57281 6 83055207 to 83055233 26 + TSS region transcription start site region 57281
Tssr57282 6 83055493 to 83055525 32 + TSS region transcription start site region 57282
Tssr57283 6 83056560 to 83056578 18 + TSS region transcription start site region 57283
Tssr57284 6 83056768 to 83056784 16 + TSS region transcription start site region 57284
Tssr57285 6 83057010 to 83057032 22 + TSS region transcription start site region 57285
Tssr57286 6 83057053 to 83057068 15 + TSS region transcription start site region 57286
Tssr57287 6 83057266 to 83057300 34 + TSS region transcription start site region 57287
D6Umi2 6 83057469 to 83057926 457 DNA segment DNA segment, Chr 6, University of Michigan 2
Dqx1 6 83057747 to 83067219 9472 + protein coding gene DEAQ RNA-dependent ATPase
Tssr57288 6 83058068 to 83058104 36 + TSS region transcription start site region 57288
D6UmiJ24 6 83061547 to 83061690 143 DNA segment DNA segment, Chr 6, University of Michigan Jones 24
Tlx2 6 83068325 to 83070225 1900 - protein coding gene T cell leukemia, homeobox 2
Cpgi17582 6 83068374 to 83071512 3138 CpG island CpG island 17582
Tssr61617 6 83070361 to 83070377 16 - TSS region transcription start site region 61617
Gm37092 6 83074599 to 83076116 1517 - unclassified gene predicted gene, 37092
Cpgi17583 6 83077613 to 83079105 1492 CpG island CpG island 17583
Tssr61618 6 83078215 to 83078235 20 - TSS region transcription start site region 61618
Tssr57289 6 83078339 to 83078389 50 + TSS region transcription start site region 57289
Pcgf1 6 83078390 to 83080855 2465 + protein coding gene polycomb group ring finger 1
Tssr57290 6 83078606 to 83078669 63 + TSS region transcription start site region 57290
Cpgi17584 6 83086275 to 83087005 730 CpG island CpG island 17584
Lbx2 6 83086365 to 83088241 1876 + protein coding gene ladybird homeobox 2
D6UmiJ4 6 83086615 to 83086743 128 DNA segment DNA segment, Chr 6, University of Michigan Jones 4
Tssr57291 6 83087278 to 83087328 50 + TSS region transcription start site region 57291
Cpgi17585 6 83087355 to 83088070 715 CpG island CpG island 17585
Mir3470a 6 83090311 to 83090387 76 - miRNA gene microRNA 3470a
D6UmiJ5 6 83096717 to 83096901 184 DNA segment DNA segment, Chr 6, University of Michigan Jones 5
Cpgi17586 6 83101238 to 83102598 1360 CpG island CpG island 17586
Tssr57292 6 83101565 to 83101609 44 + TSS region transcription start site region 57292
Ccdc142 6 83101601 to 83108394 6793 + protein coding gene coiled-coil domain containing 142
Gm42688 6 83101617 to 83109939 8322 + protein coding gene predicted gene 42688
Ccdc142os 6 83106608 to 83109054 2446 - antisense lncRNA gene coiled-coil domain containing 142, opposite strand
Cpgi17587 6 83108755 to 83109793 1038 CpG island CpG island 17587
Tssr57293 6 83108947 to 83108980 33 + TSS region transcription start site region 57293
Tssr57294 6 83109071 to 83109114 43 + TSS region transcription start site region 57294
Mrpl53 6 83109108 to 83109932 824 + protein coding gene mitochondrial ribosomal protein L53
Tssr57295 6 83109250 to 83109277 27 + TSS region transcription start site region 57295
Cpgi17588 6 83115075 to 83116342 1267 CpG island CpG island 17588
Tssr61619 6 83115389 to 83115397 8 - TSS region transcription start site region 61619
Tssr61620 6 83115412 to 83115476 64 - TSS region transcription start site region 61620
Tssr57296 6 83115495 to 83115574 79 + TSS region transcription start site region 57296
Mogs 6 83115506 to 83118902 3396 + protein coding gene mannosyl-oligosaccharide glucosidase
Tssr57297 6 83117712 to 83117732 20 + TSS region transcription start site region 57297
Wbp1 6 83119044 to 83121461 2417 - protein coding gene WW domain binding protein 1
Cpgi17589 6 83121211 to 83122657 1446 CpG island CpG island 17589
Tssr61621 6 83121385 to 83121470 85 - TSS region transcription start site region 61621
Tssr57298 6 83121705 to 83121730 25 + TSS region transcription start site region 57298
Tssr57299 6 83121734 to 83121751 17 + TSS region transcription start site region 57299
Ino80b 6 83121828 to 83125029 3201 - protein coding gene INO80 complex subunit B
Tssr61622 6 83122024 to 83122069 45 - TSS region transcription start site region 61622
Gm44287 6 83122520 to 83124397 1877 + antisense lncRNA gene predicted gene, 44287
D6UmiJ27 6 83123686 to 83123850 164 DNA segment DNA segment, Chr 6, University of Michigan Jones 27
Cpgi17590 6 83124743 to 83125267 524 CpG island CpG island 17590
Tssr61623 6 83124768 to 83124779 11 - TSS region transcription start site region 61623
Tssr61624 6 83124829 to 83124843 14 - TSS region transcription start site region 61624
Tssr61625 6 83124844 to 83124899 55 - TSS region transcription start site region 61625
Tssr61626 6 83125072 to 83125135 63 - TSS region transcription start site region 61626
Tssr61627 6 83125137 to 83125146 9 - TSS region transcription start site region 61627
Tssr61628 6 83125156 to 83125167 11 - TSS region transcription start site region 61628
Tssr61629 6 83125186 to 83125199 13 - TSS region transcription start site region 61629
D6UmiJ9 6 83134643 to 83134799 156 DNA segment DNA segment, Chr 6, University of Michigan Jones 9
Rtkn 6 83135463 to 83152579 17116 + protein coding gene rhotekin
Cpgi17591 6 83135681 to 83136285 604 CpG island CpG island 17591
Tssr57300 6 83135828 to 83135874 46 + TSS region transcription start site region 57300
Tssr57301 6 83135892 to 83135903 11 + TSS region transcription start site region 57301
D6UmiJ11 6 83136476 to 83136645 169 DNA segment DNA segment, Chr 6, University of Michigan Jones 11
Tssr57302 6 83137040 to 83137059 19 + TSS region transcription start site region 57302
Tssr57303 6 83137103 to 83137121 18 + TSS region transcription start site region 57303
Tssr57304 6 83137134 to 83137152 18 + TSS region transcription start site region 57304
Tssr57305 6 83137368 to 83137400 32 + TSS region transcription start site region 57305
Tssr57306 6 83137804 to 83137837 33 + TSS region transcription start site region 57306
Tssr57307 6 83137838 to 83137846 8 + TSS region transcription start site region 57307
Tssr57308 6 83137850 to 83137866 16 + TSS region transcription start site region 57308
Tssr57309 6 83137919 to 83137941 22 + TSS region transcription start site region 57309
Cpgi17592 6 83141846 to 83142994 1148 CpG island CpG island 17592
Tssr57310 6 83142387 to 83142429 42 + TSS region transcription start site region 57310
Tssr61630 6 83143258 to 83143264 6 - TSS region transcription start site region 61630
Tssr57311 6 83145888 to 83145937 49 + TSS region transcription start site region 57311
Tssr57312 6 83147473 to 83147515 42 + TSS region transcription start site region 57312
Wdr54 6 83152710 to 83156440 3730 - protein coding gene WD repeat domain 54
Cpgi17593 6 83155600 to 83156758 1158 CpG island CpG island 17593
Tssr61631 6 83155803 to 83155812 9 - TSS region transcription start site region 61631
Tssr61632 6 83155837 to 83155849 12 - TSS region transcription start site region 61632
Tssr61633 6 83156353 to 83156387 34 - TSS region transcription start site region 61633
Tssr61634 6 83156393 to 83156400 7 - TSS region transcription start site region 61634
Tssr57313 6 83156401 to 83156451 50 + TSS region transcription start site region 57313
Tssr61635 6 83156403 to 83156414 11 - TSS region transcription start site region 61635
1700003E16Rik 6 83156404 to 83162945 6541 + protein coding gene RIKEN cDNA 1700003E16 gene
Tssr57314 6 83156459 to 83156514 55 + TSS region transcription start site region 57314
Cpgi17594 6 83161375 to 83162558 1183 CpG island CpG island 17594
Tssr57315 6 83161792 to 83161804 12 + TSS region transcription start site region 57315