Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:8247596-8509379

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D6Dcr2 6 8253036 to 8253139 103 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 2
Rpa3 6 8255936 to 8259141 3205 - protein coding gene replication protein A3
Cpgi17151 6 8258836 to 8259747 911 CpG island CpG island 17151
Tssr59808 6 8259098 to 8259153 55 - TSS region transcription start site region 59808
Umad1 6 8259288 to 8428767 169479 + protein coding gene UMAP1-MVP12 associated (UMA) domain containing 1
Tssr54899 6 8259295 to 8259312 17 + TSS region transcription start site region 54899
Tssr54900 6 8259327 to 8259342 15 + TSS region transcription start site region 54900
Tssr54901 6 8259366 to 8259378 12 + TSS region transcription start site region 54901
Tssr54902 6 8259379 to 8259460 81 + TSS region transcription start site region 54902
Gm45062 6 8259450 to 8597480 338030 + protein coding gene predicted gene 45062
D6Dcr3 6 8287720 to 8287815 95 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 3
Gm46952 6 8333324 to 8346092 12768 - lncRNA gene predicted gene, 46952
Gm16055 6 8354056 to 8364136 10080 - antisense lncRNA gene predicted gene 16055
Tssr54903 6 8363123 to 8363127 4 + TSS region transcription start site region 54903
Tssr59809 6 8364310 to 8364321 11 - TSS region transcription start site region 59809
Tssr59810 6 8364467 to 8364477 10 - TSS region transcription start site region 59810
Tssr54904 6 8364593 to 8364607 14 + TSS region transcription start site region 54904
Gm8428 6 8377596 to 8379379 1783 - pseudogene predicted gene 8428
Tssr54905 6 8397072 to 8397075 3 + TSS region transcription start site region 54905
1810015A16Rik 6 8414254 to 8415781 1527 unclassified gene RIKEN cDNA 1810015A16 gene
Gm16043 6 8420009 to 8443455 23446 - antisense lncRNA gene predicted gene 16043
Gm24059 6 8439353 to 8439664 311 + unclassified non-coding RNA gene predicted gene, 24059
Gm26075 6 8501236 to 8501356 120 - snoRNA gene predicted gene, 26075
Tssr54906 6 8504114 to 8504125 11 + TSS region transcription start site region 54906
A430035B10Rik 6 8507059 to 8509161 2102 - lncRNA gene RIKEN cDNA A430035B10 gene
Cpgi17152 6 8508952 to 8510626 1674 CpG island CpG island 17152
Tssr59811 6 8509101 to 8509144 43 - TSS region transcription start site region 59811