Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:81937601-82868175

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gcfc2 6 81923635 to 81959098 35463 + protein coding gene GC-rich sequence DNA binding factor 2
Mrpl19 6 81957851 to 81965958 8107 - protein coding gene mitochondrial ribosomal protein L19
Cpgi17569 6 81965391 to 81966058 667 CpG island CpG island 17569
Tssr61575 6 81965665 to 81965679 14 - TSS region transcription start site region 61575
Tssr61576 6 81965925 to 81965962 37 - TSS region transcription start site region 61576
D6Mit210 6 81970166 to 81970313 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 210
D6Dcr19 6 81970186 to 81970310 124 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 19
Gm38842 6 81971600 to 81972958 1358 - lncRNA gene predicted gene, 38842
D6Dcr20 6 81973792 to 81973896 104 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 20
D6Mit386 6 81975747 to 81975852 105 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 386
Gm44202 6 81985748 to 81986743 995 - lincRNA gene predicted gene, 44202
Gm20383 6 81989926 to 81992426 2500 + lincRNA gene predicted gene, 20383
Gm32378 6 82025881 to 82033719 7838 - lncRNA gene predicted gene, 32378
Eva1a 6 82041048 to 82093099 52051 + protein coding gene eva-1 homolog A (C. elegans)
Cpgi17570 6 82041415 to 82042317 902 CpG island CpG island 17570
Tssr57250 6 82041645 to 82041698 53 + TSS region transcription start site region 57250
Tssr57251 6 82041707 to 82041719 12 + TSS region transcription start site region 57251
Tssr57252 6 82041789 to 82041802 13 + TSS region transcription start site region 57252
Gm15864 6 82050453 to 82052581 2128 - antisense lncRNA gene predicted gene 15864
Tssr57253 6 82052316 to 82052330 14 + TSS region transcription start site region 57253
Tssr61577 6 82052610 to 82052621 11 - TSS region transcription start site region 61577
Tssr57254 6 82070677 to 82070688 11 + TSS region transcription start site region 57254
Tssr57255 6 82070712 to 82070725 13 + TSS region transcription start site region 57255
Tssr57256 6 82070730 to 82070751 21 + TSS region transcription start site region 57256
Tssr57257 6 82070761 to 82070769 8 + TSS region transcription start site region 57257
Cpgi17571 6 82091754 to 82092214 460 CpG island CpG island 17571
Gm40381 6 82119768 to 82126072 6304 + lncRNA gene predicted gene, 40381
Gm31861 6 82242174 to 82242845 671 + pseudogene predicted gene, 31861
Gm44209 6 82318831 to 82322983 4152 - unclassified gene predicted gene, 44209
Cpgi17572 6 82401655 to 82401837 182 CpG island CpG island 17572
Tacr1 6 82402334 to 82560104 157770 + protein coding gene tachykinin receptor 1
Cpgi17573 6 82402601 to 82403175 574 CpG island CpG island 17573
Tssr57258 6 82403030 to 82403044 14 + TSS region transcription start site region 57258
Pole4 6 82618924 to 82652933 34009 - protein coding gene polymerase (DNA-directed), epsilon 4 (p12 subunit)
Cpgi17574 6 82652395 to 82653318 923 CpG island CpG island 17574
Tssr61578 6 82652466 to 82652485 19 - TSS region transcription start site region 61578
Tssr61579 6 82652491 to 82652554 63 - TSS region transcription start site region 61579
Tssr57259 6 82652625 to 82652646 21 + TSS region transcription start site region 57259
Tssr61580 6 82652856 to 82652881 25 - TSS region transcription start site region 61580
D6Mit129 6 82656248 to 82656387 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 129
D6Mit129.1 6 82656308 to 82656520 212 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 129.1
Gm32425 6 82679673 to 82706283 26610 + lncRNA gene predicted gene, 32425
Gm44145 6 82680132 to 82694822 14690 + antisense lncRNA gene predicted gene, 44145
Tssr61581 6 82688383 to 82688403 20 - TSS region transcription start site region 61581
Tssr61582 6 82688452 to 82688458 6 - TSS region transcription start site region 61582
Cpgi17575 6 82702774 to 82702928 154 CpG island CpG island 17575
Tssr61583 6 82705267 to 82705284 17 - TSS region transcription start site region 61583
Tssr61584 6 82705328 to 82705338 10 - TSS region transcription start site region 61584
Tssr61585 6 82705352 to 82705386 34 - TSS region transcription start site region 61585
Gm32534 6 82710743 to 82714807 4064 - lncRNA gene predicted gene, 32534
Gm32480 6 82714385 to 82715969 1584 + lncRNA gene predicted gene, 32480
Hk2 6 82725025 to 82774454 49429 - protein coding gene hexokinase 2
Tssr61586 6 82726648 to 82726657 9 - TSS region transcription start site region 61586
Tssr61587 6 82730839 to 82730851 12 - TSS region transcription start site region 61587
Tssr61588 6 82737280 to 82737304 24 - TSS region transcription start site region 61588
Tssr57260 6 82737366 to 82737367 1 + TSS region transcription start site region 57260
Tssr61589 6 82751866 to 82751880 14 - TSS region transcription start site region 61589
Tssr61590 6 82752735 to 82752739 4 - TSS region transcription start site region 61590
Tssr61591 6 82754033 to 82754054 21 - TSS region transcription start site region 61591
Tssr61592 6 82760139 to 82760182 43 - TSS region transcription start site region 61592
Tssr61593 6 82760822 to 82760845 23 - TSS region transcription start site region 61593
Gm17034 6 82764282 to 82767288 3006 + antisense lncRNA gene predicted gene 17034
D6Mit164 6 82766161 to 82766305 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 164
Cpgi17576 6 82773171 to 82774942 1771 CpG island CpG island 17576
Tssr61594 6 82774427 to 82774444 17 - TSS region transcription start site region 61594
Tssr61595 6 82774448 to 82774463 15 - TSS region transcription start site region 61595
Tssr1903 6 82780500 to 82780541 41 - TSS region transcription start site region 1903
Tssr1904 6 82780928 to 82780971 43 - TSS region transcription start site region 1904
Gm38843 6 82803769 to 82805083 1314 - lincRNA gene predicted gene, 38843
Tssr61596 6 82805067 to 82805077 10 - TSS region transcription start site region 61596
Tssr1905 6 82805088 to 82805109 21 - TSS region transcription start site region 1905
Tssr61597 6 82824319 to 82824339 20 - TSS region transcription start site region 61597
Gm32591 6 82831265 to 82841391 10126 + lincRNA gene predicted gene, 32591
D6UmiJ20 6 82856673 to 82856811 138 DNA segment DNA segment, Chr 6, University of Michigan Jones 20
Tssr61598 6 82857656 to 82857690 34 - TSS region transcription start site region 61598