Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:8170743-9021989

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sig 6 4464884 to 8778488 4313604 heritable phenotypic marker sightless
Col28a1 6 7997808 to 8192617 194809 - protein coding gene collagen, type XXVIII, alpha 1
Tssr59804 6 8171358 to 8171359 1 - TSS region transcription start site region 59804
Tssr59805 6 8180214 to 8180258 44 - TSS region transcription start site region 59805
Tssr59806 6 8180259 to 8180270 11 - TSS region transcription start site region 59806
Tssr59807 6 8193674 to 8193706 32 - TSS region transcription start site region 59807
Cpgi17150 6 8208969 to 8209818 849 CpG island CpG island 17150
Tssr54896 6 8209216 to 8209263 47 + TSS region transcription start site region 54896
Mios 6 8209222 to 8236274 27052 + protein coding gene meiosis regulator for oocyte development
Tssr54897 6 8209289 to 8209351 62 + TSS region transcription start site region 54897
Tssr54898 6 8217382 to 8217386 4 + TSS region transcription start site region 54898
Gm46951 6 8237027 to 8244935 7908 + lncRNA gene predicted gene, 46951
D6Dcr2 6 8253036 to 8253139 103 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 2
Rpa3 6 8255936 to 8259141 3205 - protein coding gene replication protein A3
Cpgi17151 6 8258836 to 8259747 911 CpG island CpG island 17151
Tssr59808 6 8259098 to 8259153 55 - TSS region transcription start site region 59808
Umad1 6 8259288 to 8428767 169479 + protein coding gene UMAP1-MVP12 associated (UMA) domain containing 1
Tssr54899 6 8259295 to 8259312 17 + TSS region transcription start site region 54899
Tssr54900 6 8259327 to 8259342 15 + TSS region transcription start site region 54900
Tssr54901 6 8259366 to 8259378 12 + TSS region transcription start site region 54901
Tssr54902 6 8259379 to 8259460 81 + TSS region transcription start site region 54902
Gm45062 6 8259450 to 8597480 338030 + protein coding gene predicted gene 45062
D6Dcr3 6 8287720 to 8287815 95 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 3
Gm46952 6 8333324 to 8346092 12768 - lncRNA gene predicted gene, 46952
Gm16055 6 8354056 to 8364136 10080 - antisense lncRNA gene predicted gene 16055
Tssr54903 6 8363123 to 8363127 4 + TSS region transcription start site region 54903
Tssr59809 6 8364310 to 8364321 11 - TSS region transcription start site region 59809
Tssr59810 6 8364467 to 8364477 10 - TSS region transcription start site region 59810
Tssr54904 6 8364593 to 8364607 14 + TSS region transcription start site region 54904
Gm8428 6 8377596 to 8379379 1783 - pseudogene predicted gene 8428
Tssr54905 6 8397072 to 8397075 3 + TSS region transcription start site region 54905
1810015A16Rik 6 8414254 to 8415781 1527 unclassified gene RIKEN cDNA 1810015A16 gene
Gm16043 6 8420009 to 8443455 23446 - antisense lncRNA gene predicted gene 16043
Gm24059 6 8439353 to 8439664 311 + unclassified non-coding RNA gene predicted gene, 24059
Gm26075 6 8501236 to 8501356 120 - snoRNA gene predicted gene, 26075
Tssr54906 6 8504114 to 8504125 11 + TSS region transcription start site region 54906
A430035B10Rik 6 8507059 to 8509161 2102 - lncRNA gene RIKEN cDNA A430035B10 gene
Cpgi17152 6 8508952 to 8510626 1674 CpG island CpG island 17152
Tssr59811 6 8509101 to 8509144 43 - TSS region transcription start site region 59811
Tssr54907 6 8509387 to 8509437 50 + TSS region transcription start site region 54907
Tssr54908 6 8509444 to 8509449 5 + TSS region transcription start site region 54908
Glcci1 6 8509600 to 8597548 87948 + protein coding gene glucocorticoid induced transcript 1
Tssr54909 6 8509783 to 8509794 11 + TSS region transcription start site region 54909
Tssr54910 6 8509797 to 8509800 3 + TSS region transcription start site region 54910
Tssr54911 6 8509801 to 8509815 14 + TSS region transcription start site region 54911
Tssr54912 6 8509828 to 8509848 20 + TSS region transcription start site region 54912
Tssr54913 6 8509857 to 8509875 18 + TSS region transcription start site region 54913
Tssr54914 6 8509908 to 8509929 21 + TSS region transcription start site region 54914
Tammq3 6 8514064 to 8514064 0 QTL tibialis anterior muscle mass QTL 3
Edlmmq4 6 8514064 to 8514064 0 QTL extensor digitorum longus muscle mass QTL 4
Gmmq3 6 8514064 to 8514064 0 QTL gastrocnemius muscle mass QTL 3
Tssr54915 6 8517809 to 8517849 40 + TSS region transcription start site region 54915
Tssr54916 6 8520008 to 8520047 39 + TSS region transcription start site region 54916
Tssr54917 6 8521884 to 8521895 11 + TSS region transcription start site region 54917
Tssr54918 6 8524169 to 8524170 1 + TSS region transcription start site region 54918
Tssr54919 6 8527260 to 8527268 8 + TSS region transcription start site region 54919
Tssr1777 6 8532085 to 8532089 4 + TSS region transcription start site region 1777
Tssr54920 6 8544573 to 8544587 14 + TSS region transcription start site region 54920
Tssr54921 6 8545325 to 8545329 4 + TSS region transcription start site region 54921
Tssr54922 6 8550370 to 8550375 5 + TSS region transcription start site region 54922
Tssr54923 6 8580634 to 8580635 1 + TSS region transcription start site region 54923
Tssr54924 6 8594279 to 8594288 9 + TSS region transcription start site region 54924
Gm16042 6 8595743 to 8596989 1246 - pseudogene predicted gene 16042
Gm35621 6 8622836 to 8624877 2041 + lncRNA gene predicted gene, 35621
Ica1 6 8630527 to 8778488 147961 - protein coding gene islet cell autoantigen 1
Tssr59812 6 8647781 to 8647792 11 - TSS region transcription start site region 59812
Tssr59813 6 8647798 to 8647806 8 - TSS region transcription start site region 59813
5730409L17Rik 6 8725127 to 8728730 3603 unclassified gene RIKEN cDNA 5730409L17 gene
Cpgi17153 6 8728847 to 8729103 256 CpG island CpG island 17153
Tssr1778 6 8728998 to 8729012 14 - TSS region transcription start site region 1778
Tssr59814 6 8735309 to 8735314 5 - TSS region transcription start site region 59814
Tssr59815 6 8759379 to 8759385 6 - TSS region transcription start site region 59815
Cpgi17154 6 8777458 to 8778624 1166 CpG island CpG island 17154
Tssr59816 6 8778106 to 8778162 56 - TSS region transcription start site region 59816
Tssr59817 6 8778213 to 8778230 17 - TSS region transcription start site region 59817
Tssr59818 6 8778455 to 8778501 46 - TSS region transcription start site region 59818
Tssr59819 6 8778514 to 8778531 17 - TSS region transcription start site region 59819
Tssr59820 6 8778539 to 8778550 11 - TSS region transcription start site region 59820
Gm38765 6 8806263 to 8814118 7855 + lncRNA gene predicted gene, 38765
Gm35674 6 8893106 to 8912473 19367 + lncRNA gene predicted gene, 35674
Cpgi17155 6 8948148 to 8949419 1271 CpG island CpG island 17155
Tssr54925 6 8948427 to 8948438 11 + TSS region transcription start site region 54925
Nxph1 6 8948431 to 9249032 300601 + protein coding gene neurexophilin 1
Tssr54926 6 8948570 to 8948602 32 + TSS region transcription start site region 54926
Tssr54927 6 8948608 to 8948619 11 + TSS region transcription start site region 54927
Tssr54928 6 8948915 to 8948929 14 + TSS region transcription start site region 54928
Tssr54929 6 8948951 to 8948963 12 + TSS region transcription start site region 54929
Tssr54930 6 8949052 to 8949068 16 + TSS region transcription start site region 54930
Cpgi17156 6 8949660 to 8950351 691 CpG island CpG island 17156
Tssr54931 6 8949670 to 8949686 16 + TSS region transcription start site region 54931
Tssr54932 6 8949812 to 8949830 18 + TSS region transcription start site region 54932
Cpgi17157 6 8951054 to 8951766 712 CpG island CpG island 17157
Cpgi17158 6 8955897 to 8956140 243 CpG island CpG island 17158
Cpgi17159 6 8957518 to 8957797 279 CpG island CpG island 17159