Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:8125936-8389141

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col28a1 6 7997808 to 8192617 194809 - protein coding gene collagen, type XXVIII, alpha 1
Tssr59804 6 8171358 to 8171359 1 - TSS region transcription start site region 59804
Tssr59805 6 8180214 to 8180258 44 - TSS region transcription start site region 59805
Tssr59806 6 8180259 to 8180270 11 - TSS region transcription start site region 59806
Tssr59807 6 8193674 to 8193706 32 - TSS region transcription start site region 59807
Cpgi17150 6 8208969 to 8209818 849 CpG island CpG island 17150
Tssr54896 6 8209216 to 8209263 47 + TSS region transcription start site region 54896
Mios 6 8209222 to 8236274 27052 + protein coding gene meiosis regulator for oocyte development
Tssr54897 6 8209289 to 8209351 62 + TSS region transcription start site region 54897
Tssr54898 6 8217382 to 8217386 4 + TSS region transcription start site region 54898
Gm46951 6 8237027 to 8244935 7908 + lncRNA gene predicted gene, 46951
D6Dcr2 6 8253036 to 8253139 103 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 2
Rpa3 6 8255936 to 8259141 3205 - protein coding gene replication protein A3
Cpgi17151 6 8258836 to 8259747 911 CpG island CpG island 17151
Tssr59808 6 8259098 to 8259153 55 - TSS region transcription start site region 59808
Umad1 6 8259288 to 8428767 169479 + protein coding gene UMAP1-MVP12 associated (UMA) domain containing 1
Tssr54899 6 8259295 to 8259312 17 + TSS region transcription start site region 54899
Tssr54900 6 8259327 to 8259342 15 + TSS region transcription start site region 54900
Tssr54901 6 8259366 to 8259378 12 + TSS region transcription start site region 54901
Tssr54902 6 8259379 to 8259460 81 + TSS region transcription start site region 54902
Gm45062 6 8259450 to 8597480 338030 + protein coding gene predicted gene 45062
D6Dcr3 6 8287720 to 8287815 95 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 3
Gm46952 6 8333324 to 8346092 12768 - lncRNA gene predicted gene, 46952
Gm16055 6 8354056 to 8364136 10080 - antisense lncRNA gene predicted gene 16055
Tssr54903 6 8363123 to 8363127 4 + TSS region transcription start site region 54903
Tssr59809 6 8364310 to 8364321 11 - TSS region transcription start site region 59809
Tssr59810 6 8364467 to 8364477 10 - TSS region transcription start site region 59810
Tssr54904 6 8364593 to 8364607 14 + TSS region transcription start site region 54904
Gm8428 6 8377596 to 8379379 1783 - pseudogene predicted gene 8428