Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:80536272-85516305

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663 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrtm4 6 80018877 to 80810143 791266 + protein coding gene leucine rich repeat transmembrane neuronal 4
Tssr57246 6 80566150 to 80566154 4 + TSS region transcription start site region 57246
D6Mit4 6 80638709 to 80638806 97 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 4
Gm44231 6 80655029 to 80659103 4074 + unclassified gene predicted gene, 44231
D6Mit212 6 80700081 to 80700213 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 212
Tssr57247 6 80809572 to 80809606 34 + TSS region transcription start site region 57247
Gm43900 6 80827138 to 80829806 2668 + unclassified gene predicted gene, 43900
Tssr61570 6 81033764 to 81033775 11 - TSS region transcription start site region 61570
D6Mit281 6 81233192 to 81233313 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 281
Gm43901 6 81420806 to 81421258 452 - pseudogene predicted gene, 43901
Gm38838 6 81428997 to 81446257 17260 - lncRNA gene predicted gene, 38838
Gm26264 6 81638311 to 81638469 158 + snRNA gene predicted gene, 26264
Gm38839 6 81707217 to 81716200 8983 - lincRNA gene predicted gene, 38839
Gm32223 6 81718461 to 81729327 10866 - lncRNA gene predicted gene, 32223
Gm22530 6 81806791 to 81806908 117 + snoRNA gene predicted gene, 22530
Gm4874 6 81840734 to 81841362 628 - pseudogene predicted gene 4874
Tssr61571 6 81841446 to 81841447 1 - TSS region transcription start site region 61571
Gm38840 6 81864244 to 81875864 11620 - pseudogene predicted gene, 38840
1700097M23Rik 6 81893818 to 81895339 1521 - unclassified gene RIKEN cDNA 1700097M23 gene
Mir7232 6 81895590 to 81895663 73 - miRNA gene microRNA 7232
Mir468 6 81896599 to 81896676 77 - miRNA gene microRNA 468
1700009C05Rik 6 81900465 to 81910800 10335 - lincRNA gene RIKEN cDNA 1700009C05 gene
Cpgi17567 6 81910401 to 81910700 299 CpG island CpG island 17567
Tssr61572 6 81910423 to 81910429 6 - TSS region transcription start site region 61572
Tssr61573 6 81910448 to 81910470 22 - TSS region transcription start site region 61573
Tssr61574 6 81910480 to 81910515 35 - TSS region transcription start site region 61574
Tssr57248 6 81911948 to 81911952 4 + TSS region transcription start site region 57248
Gm38841 6 81913588 to 81920429 6841 + lncRNA gene predicted gene, 38841
Cpgi17568 6 81923359 to 81924176 817 CpG island CpG island 17568
Gcfc2 6 81923635 to 81959098 35463 + protein coding gene GC-rich sequence DNA binding factor 2
Tssr57249 6 81923645 to 81923706 61 + TSS region transcription start site region 57249
Mrpl19 6 81957851 to 81965958 8107 - protein coding gene mitochondrial ribosomal protein L19
Cpgi17569 6 81965391 to 81966058 667 CpG island CpG island 17569
Tssr61575 6 81965665 to 81965679 14 - TSS region transcription start site region 61575
Tssr61576 6 81965925 to 81965962 37 - TSS region transcription start site region 61576
D6Mit210 6 81970166 to 81970313 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 210
D6Dcr19 6 81970186 to 81970310 124 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 19
Gm38842 6 81971600 to 81972958 1358 - lncRNA gene predicted gene, 38842
D6Dcr20 6 81973792 to 81973896 104 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 20
D6Mit386 6 81975747 to 81975852 105 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 386
Gm44202 6 81985748 to 81986743 995 - lincRNA gene predicted gene, 44202
Gm20383 6 81989926 to 81992426 2500 + lincRNA gene predicted gene, 20383
Gm32378 6 82025881 to 82033719 7838 - lncRNA gene predicted gene, 32378
Eva1a 6 82041048 to 82093099 52051 + protein coding gene eva-1 homolog A (C. elegans)
Cpgi17570 6 82041415 to 82042317 902 CpG island CpG island 17570
Tssr57250 6 82041645 to 82041698 53 + TSS region transcription start site region 57250
Tssr57251 6 82041707 to 82041719 12 + TSS region transcription start site region 57251
Tssr57252 6 82041789 to 82041802 13 + TSS region transcription start site region 57252
Gm15864 6 82050453 to 82052581 2128 - antisense lncRNA gene predicted gene 15864
Tssr57253 6 82052316 to 82052330 14 + TSS region transcription start site region 57253
Tssr61577 6 82052610 to 82052621 11 - TSS region transcription start site region 61577
Tssr57254 6 82070677 to 82070688 11 + TSS region transcription start site region 57254
Tssr57255 6 82070712 to 82070725 13 + TSS region transcription start site region 57255
Tssr57256 6 82070730 to 82070751 21 + TSS region transcription start site region 57256
Tssr57257 6 82070761 to 82070769 8 + TSS region transcription start site region 57257
Cpgi17571 6 82091754 to 82092214 460 CpG island CpG island 17571
Gm40381 6 82119768 to 82126072 6304 + lncRNA gene predicted gene, 40381
Gm31861 6 82242174 to 82242845 671 + pseudogene predicted gene, 31861
Gm44209 6 82318831 to 82322983 4152 - unclassified gene predicted gene, 44209
Cpgi17572 6 82401655 to 82401837 182 CpG island CpG island 17572
Tacr1 6 82402334 to 82560104 157770 + protein coding gene tachykinin receptor 1
Cpgi17573 6 82402601 to 82403175 574 CpG island CpG island 17573
Tssr57258 6 82403030 to 82403044 14 + TSS region transcription start site region 57258
Pole4 6 82618924 to 82652933 34009 - protein coding gene polymerase (DNA-directed), epsilon 4 (p12 subunit)
Cpgi17574 6 82652395 to 82653318 923 CpG island CpG island 17574
Tssr61578 6 82652466 to 82652485 19 - TSS region transcription start site region 61578
Tssr61579 6 82652491 to 82652554 63 - TSS region transcription start site region 61579
Tssr57259 6 82652625 to 82652646 21 + TSS region transcription start site region 57259
Tssr61580 6 82652856 to 82652881 25 - TSS region transcription start site region 61580
D6Mit129 6 82656248 to 82656387 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 129
D6Mit129.1 6 82656308 to 82656520 212 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 129.1
Gm32425 6 82679673 to 82706283 26610 + lncRNA gene predicted gene, 32425
Gm44145 6 82680132 to 82694822 14690 + antisense lncRNA gene predicted gene, 44145
Tssr61581 6 82688383 to 82688403 20 - TSS region transcription start site region 61581
Tssr61582 6 82688452 to 82688458 6 - TSS region transcription start site region 61582
Cpgi17575 6 82702774 to 82702928 154 CpG island CpG island 17575
Tssr61583 6 82705267 to 82705284 17 - TSS region transcription start site region 61583
Tssr61584 6 82705328 to 82705338 10 - TSS region transcription start site region 61584
Tssr61585 6 82705352 to 82705386 34 - TSS region transcription start site region 61585
Gm32534 6 82710743 to 82714807 4064 - lncRNA gene predicted gene, 32534
Gm32480 6 82714385 to 82715969 1584 + lncRNA gene predicted gene, 32480
Hk2 6 82725025 to 82774454 49429 - protein coding gene hexokinase 2
Tssr61586 6 82726648 to 82726657 9 - TSS region transcription start site region 61586
Tssr61587 6 82730839 to 82730851 12 - TSS region transcription start site region 61587
Tssr61588 6 82737280 to 82737304 24 - TSS region transcription start site region 61588
Tssr57260 6 82737366 to 82737367 1 + TSS region transcription start site region 57260
Tssr61589 6 82751866 to 82751880 14 - TSS region transcription start site region 61589
Tssr61590 6 82752735 to 82752739 4 - TSS region transcription start site region 61590
Tssr61591 6 82754033 to 82754054 21 - TSS region transcription start site region 61591
Tssr61592 6 82760139 to 82760182 43 - TSS region transcription start site region 61592
Tssr61593 6 82760822 to 82760845 23 - TSS region transcription start site region 61593
Gm17034 6 82764282 to 82767288 3006 + antisense lncRNA gene predicted gene 17034
D6Mit164 6 82766161 to 82766305 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 164
Cpgi17576 6 82773171 to 82774942 1771 CpG island CpG island 17576
Tssr61594 6 82774427 to 82774444 17 - TSS region transcription start site region 61594
Tssr61595 6 82774448 to 82774463 15 - TSS region transcription start site region 61595
Tssr1903 6 82780500 to 82780541 41 - TSS region transcription start site region 1903
Tssr1904 6 82780928 to 82780971 43 - TSS region transcription start site region 1904
Gm38843 6 82803769 to 82805083 1314 - lincRNA gene predicted gene, 38843
Tssr61596 6 82805067 to 82805077 10 - TSS region transcription start site region 61596
Tssr1905 6 82805088 to 82805109 21 - TSS region transcription start site region 1905
Tssr61597 6 82824319 to 82824339 20 - TSS region transcription start site region 61597
Gm32591 6 82831265 to 82841391 10126 + lincRNA gene predicted gene, 32591
D6UmiJ20 6 82856673 to 82856811 138 DNA segment DNA segment, Chr 6, University of Michigan Jones 20
Tssr61598 6 82857656 to 82857690 34 - TSS region transcription start site region 61598
D6Mit283 6 82874997 to 82875116 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 283
2310069B03Rik 6 82877866 to 82881853 3987 - lincRNA gene RIKEN cDNA 2310069B03 gene
Cpgi17577 6 82881751 to 82881956 205 CpG island CpG island 17577
Tssr61599 6 82883858 to 82883864 6 - TSS region transcription start site region 61599
D6Umi10 6 82884690 to 82884824 134 DNA segment DNA segment, Chr 6, University of Michigan 10
Gm6312 6 82887516 to 82888709 1193 - pseudogene predicted gene 6312
Gm45145 6 82896867 to 82905214 8347 - lincRNA gene predicted gene 45145
Tssr61600 6 82905192 to 82905206 14 - TSS region transcription start site region 61600
Sema4f 6 82911885 to 82939769 27884 - protein coding gene sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
D6UmiJ23 6 82912428 to 82912559 131 DNA segment DNA segment, Chr 6, University of Michigan Jones 23
Cpgi17578 6 82939108 to 82939857 749 CpG island CpG island 17578
Tssr61601 6 82939559 to 82939587 28 - TSS region transcription start site region 61601
Tssr61602 6 82939634 to 82939652 18 - TSS region transcription start site region 61602
Tssr61603 6 82939676 to 82939760 84 - TSS region transcription start site region 61603
Tssr57261 6 82946898 to 82946924 26 + TSS region transcription start site region 57261
M1ap 6 82946908 to 83030309 83401 + protein coding gene meiosis 1 associated protein
Tssr57262 6 82952737 to 82952743 6 + TSS region transcription start site region 57262
Gm19287 6 82952780 to 82953136 356 + pseudogene predicted gene, 19287
Tssr57263 6 82960209 to 82960218 9 + TSS region transcription start site region 57263
Tssr57264 6 82960241 to 82960252 11 + TSS region transcription start site region 57264
Tssr57265 6 82960269 to 82960278 9 + TSS region transcription start site region 57265
Tssr57266 6 82960540 to 82960547 7 + TSS region transcription start site region 57266
D6UmiJ16 6 82968302 to 82968462 160 DNA segment DNA segment, Chr 6, University of Michigan Jones 16
D6Mit189 6 82985330 to 82985480 150 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 189
Gm43985 6 82990823 to 82991579 756 - pseudogene predicted gene, 43985
Gm43981 6 82991645 to 82993111 1466 + unclassified gene predicted gene, 43981
Tssr57267 6 82998829 to 82998830 1 + TSS region transcription start site region 57267
Tssr61604 6 83004932 to 83004972 40 - TSS region transcription start site region 61604
Tssr57268 6 83005846 to 83005873 27 + TSS region transcription start site region 57268
Tssr57269 6 83006260 to 83006281 21 + TSS region transcription start site region 57269
Gm32644 6 83008181 to 83022898 14717 - lncRNA gene predicted gene, 32644
Tssr57270 6 83008917 to 83008931 14 + TSS region transcription start site region 57270
D6UmiJ18 6 83012200 to 83012353 153 DNA segment DNA segment, Chr 6, University of Michigan Jones 18
Tssr57271 6 83014693 to 83014697 4 + TSS region transcription start site region 57271
Tssr57272 6 83015278 to 83015317 39 + TSS region transcription start site region 57272
Tssr57273 6 83026272 to 83026305 33 + TSS region transcription start site region 57273
D6UmiJ19 6 83028842 to 83028968 126 DNA segment DNA segment, Chr 6, University of Michigan Jones 19
Dok1 6 83030934 to 83033471 2537 - protein coding gene docking protein 1
Cpgi17579 6 83032596 to 83034017 1421 CpG island CpG island 17579
Tssr57274 6 83032805 to 83032820 15 + TSS region transcription start site region 57274
Tssr61605 6 83033200 to 83033211 11 - TSS region transcription start site region 61605
Tssr61606 6 83033336 to 83033347 11 - TSS region transcription start site region 61606
Tssr61607 6 83033367 to 83033378 11 - TSS region transcription start site region 61607
Tssr61608 6 83033398 to 83033409 11 - TSS region transcription start site region 61608
Tssr61609 6 83033412 to 83033419 7 - TSS region transcription start site region 61609
Tssr61610 6 83033422 to 83033476 54 - TSS region transcription start site region 61610
Tssr57275 6 83034188 to 83034252 64 + TSS region transcription start site region 57275
Loxl3 6 83034224 to 83052564 18340 + protein coding gene lysyl oxidase-like 3
Cpgi17580 6 83038622 to 83038970 348 CpG island CpG island 17580
Tssr57276 6 83039276 to 83039283 7 + TSS region transcription start site region 57276
D6UmiJ26 6 83048166 to 83048349 183 DNA segment DNA segment, Chr 6, University of Michigan Jones 26
Tssr57277 6 83048523 to 83048528 5 + TSS region transcription start site region 57277
Mir7040 6 83049711 to 83049773 62 + miRNA gene microRNA 7040
Htra2 6 83051266 to 83054571 3305 - protein coding gene HtrA serine peptidase 2
Tssr57278 6 83051269 to 83051285 16 + TSS region transcription start site region 57278
Cpgi17581 6 83053510 to 83055416 1906 CpG island CpG island 17581
Tssr61611 6 83053677 to 83053693 16 - TSS region transcription start site region 61611
Tssr61612 6 83053722 to 83053773 51 - TSS region transcription start site region 61612
Tssr61613 6 83053778 to 83053828 50 - TSS region transcription start site region 61613
Tssr57279 6 83053873 to 83053893 20 + TSS region transcription start site region 57279
Tssr61614 6 83054331 to 83054342 11 - TSS region transcription start site region 61614
Tssr61615 6 83054379 to 83054409 30 - TSS region transcription start site region 61615
Tssr61616 6 83054415 to 83054485 70 - TSS region transcription start site region 61616
Aup1 6 83054521 to 83057682 3161 + protein coding gene ancient ubiquitous protein 1
Tssr57280 6 83054722 to 83054739 17 + TSS region transcription start site region 57280
Tssr57281 6 83055207 to 83055233 26 + TSS region transcription start site region 57281
Tssr57282 6 83055493 to 83055525 32 + TSS region transcription start site region 57282
Tssr57283 6 83056560 to 83056578 18 + TSS region transcription start site region 57283
Tssr57284 6 83056768 to 83056784 16 + TSS region transcription start site region 57284
Tssr57285 6 83057010 to 83057032 22 + TSS region transcription start site region 57285
Tssr57286 6 83057053 to 83057068 15 + TSS region transcription start site region 57286
Tssr57287 6 83057266 to 83057300 34 + TSS region transcription start site region 57287
D6Umi2 6 83057469 to 83057926 457 DNA segment DNA segment, Chr 6, University of Michigan 2
Dqx1 6 83057747 to 83067219 9472 + protein coding gene DEAQ RNA-dependent ATPase
Tssr57288 6 83058068 to 83058104 36 + TSS region transcription start site region 57288
D6UmiJ24 6 83061547 to 83061690 143 DNA segment DNA segment, Chr 6, University of Michigan Jones 24
Tlx2 6 83068325 to 83070225 1900 - protein coding gene T cell leukemia, homeobox 2
Cpgi17582 6 83068374 to 83071512 3138 CpG island CpG island 17582
Tssr61617 6 83070361 to 83070377 16 - TSS region transcription start site region 61617
Gm37092 6 83074599 to 83076116 1517 - unclassified gene predicted gene, 37092
Cpgi17583 6 83077613 to 83079105 1492 CpG island CpG island 17583
Tssr61618 6 83078215 to 83078235 20 - TSS region transcription start site region 61618
Tssr57289 6 83078339 to 83078389 50 + TSS region transcription start site region 57289
Pcgf1 6 83078390 to 83080855 2465 + protein coding gene polycomb group ring finger 1
Tssr57290 6 83078606 to 83078669 63 + TSS region transcription start site region 57290
Cpgi17584 6 83086275 to 83087005 730 CpG island CpG island 17584
Lbx2 6 83086365 to 83088241 1876 + protein coding gene ladybird homeobox 2
D6UmiJ4 6 83086615 to 83086743 128 DNA segment DNA segment, Chr 6, University of Michigan Jones 4
Tssr57291 6 83087278 to 83087328 50 + TSS region transcription start site region 57291
Cpgi17585 6 83087355 to 83088070 715 CpG island CpG island 17585
Mir3470a 6 83090311 to 83090387 76 - miRNA gene microRNA 3470a
D6UmiJ5 6 83096717 to 83096901 184 DNA segment DNA segment, Chr 6, University of Michigan Jones 5
Cpgi17586 6 83101238 to 83102598 1360 CpG island CpG island 17586
Tssr57292 6 83101565 to 83101609 44 + TSS region transcription start site region 57292
Ccdc142 6 83101601 to 83108394 6793 + protein coding gene coiled-coil domain containing 142