Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:80213997-82661257

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrtm4 6 80018877 to 80810143 791266 + protein coding gene leucine rich repeat transmembrane neuronal 4
Tssr57241 6 80214753 to 80214784 31 + TSS region transcription start site region 57241
D6Mit176 6 80217118 to 80217217 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 176
Gm44228 6 80217451 to 80219476 2025 + unclassified gene predicted gene, 44228
Gm44230 6 80268496 to 80272045 3549 + unclassified gene predicted gene, 44230
Gm20371 6 80302613 to 80304368 1755 + unclassified gene predicted gene, 20371
Tssr57242 6 80314451 to 80314460 9 + TSS region transcription start site region 57242
Gm44241 6 80319192 to 80320853 1661 + unclassified gene predicted gene, 44241
D6Abb1e 6 80371275 to 80371531 256 DNA segment DNA segment, Chr 6, Abbott 1 expressed
Tssr57243 6 80401605 to 80401612 7 + TSS region transcription start site region 57243
Gm44229 6 80445350 to 80447836 2486 + unclassified gene predicted gene, 44229
Tssr57244 6 80458746 to 80458747 1 + TSS region transcription start site region 57244
D6Mit5 6 80484738 to 80484905 167 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 5
Im4 6 80484738 to 80484905 167 QTL immunoregulatory 4
D6Mit282 6 80493876 to 80493990 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 282
C030013C02Rik 6 80504873 to 80505344 471 unclassified gene RIKEN cDNA C030013C02 gene
Gm44242 6 80514594 to 80517314 2720 + unclassified gene predicted gene, 44242
Tssr57245 6 80517244 to 80517264 20 + TSS region transcription start site region 57245
Tssr57246 6 80566150 to 80566154 4 + TSS region transcription start site region 57246
D6Mit4 6 80638709 to 80638806 97 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 4
Gm44231 6 80655029 to 80659103 4074 + unclassified gene predicted gene, 44231
D6Mit212 6 80700081 to 80700213 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 212
Tssr57247 6 80809572 to 80809606 34 + TSS region transcription start site region 57247
Gm43900 6 80827138 to 80829806 2668 + unclassified gene predicted gene, 43900
Tssr61570 6 81033764 to 81033775 11 - TSS region transcription start site region 61570
D6Mit281 6 81233192 to 81233313 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 281
Gm43901 6 81420806 to 81421258 452 - pseudogene predicted gene, 43901
Gm38838 6 81428997 to 81446257 17260 - lncRNA gene predicted gene, 38838
Gm26264 6 81638311 to 81638469 158 + snRNA gene predicted gene, 26264
Gm38839 6 81707217 to 81716200 8983 - lincRNA gene predicted gene, 38839
Gm32223 6 81718461 to 81729327 10866 - lncRNA gene predicted gene, 32223
Gm22530 6 81806791 to 81806908 117 + snoRNA gene predicted gene, 22530
Gm4874 6 81840734 to 81841362 628 - pseudogene predicted gene 4874
Tssr61571 6 81841446 to 81841447 1 - TSS region transcription start site region 61571
Gm38840 6 81864244 to 81875864 11620 - pseudogene predicted gene, 38840
1700097M23Rik 6 81893818 to 81895339 1521 - unclassified gene RIKEN cDNA 1700097M23 gene
Mir7232 6 81895590 to 81895663 73 - miRNA gene microRNA 7232
Mir468 6 81896599 to 81896676 77 - miRNA gene microRNA 468
1700009C05Rik 6 81900465 to 81910800 10335 - lincRNA gene RIKEN cDNA 1700009C05 gene
Cpgi17567 6 81910401 to 81910700 299 CpG island CpG island 17567
Tssr61572 6 81910423 to 81910429 6 - TSS region transcription start site region 61572
Tssr61573 6 81910448 to 81910470 22 - TSS region transcription start site region 61573
Tssr61574 6 81910480 to 81910515 35 - TSS region transcription start site region 61574
Tssr57248 6 81911948 to 81911952 4 + TSS region transcription start site region 57248
Gm38841 6 81913588 to 81920429 6841 + lncRNA gene predicted gene, 38841
Cpgi17568 6 81923359 to 81924176 817 CpG island CpG island 17568
Gcfc2 6 81923635 to 81959098 35463 + protein coding gene GC-rich sequence DNA binding factor 2
Tssr57249 6 81923645 to 81923706 61 + TSS region transcription start site region 57249
Mrpl19 6 81957851 to 81965958 8107 - protein coding gene mitochondrial ribosomal protein L19
Cpgi17569 6 81965391 to 81966058 667 CpG island CpG island 17569
Tssr61575 6 81965665 to 81965679 14 - TSS region transcription start site region 61575
Tssr61576 6 81965925 to 81965962 37 - TSS region transcription start site region 61576
D6Mit210 6 81970166 to 81970313 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 210
D6Dcr19 6 81970186 to 81970310 124 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 19
Gm38842 6 81971600 to 81972958 1358 - lncRNA gene predicted gene, 38842
D6Dcr20 6 81973792 to 81973896 104 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 20
D6Mit386 6 81975747 to 81975852 105 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 386
Gm44202 6 81985748 to 81986743 995 - lincRNA gene predicted gene, 44202
Gm20383 6 81989926 to 81992426 2500 + lincRNA gene predicted gene, 20383
Gm32378 6 82025881 to 82033719 7838 - lncRNA gene predicted gene, 32378
Eva1a 6 82041048 to 82093099 52051 + protein coding gene eva-1 homolog A (C. elegans)
Cpgi17570 6 82041415 to 82042317 902 CpG island CpG island 17570
Tssr57250 6 82041645 to 82041698 53 + TSS region transcription start site region 57250
Tssr57251 6 82041707 to 82041719 12 + TSS region transcription start site region 57251
Tssr57252 6 82041789 to 82041802 13 + TSS region transcription start site region 57252
Gm15864 6 82050453 to 82052581 2128 - antisense lncRNA gene predicted gene 15864
Tssr57253 6 82052316 to 82052330 14 + TSS region transcription start site region 57253
Tssr61577 6 82052610 to 82052621 11 - TSS region transcription start site region 61577
Tssr57254 6 82070677 to 82070688 11 + TSS region transcription start site region 57254
Tssr57255 6 82070712 to 82070725 13 + TSS region transcription start site region 57255
Tssr57256 6 82070730 to 82070751 21 + TSS region transcription start site region 57256
Tssr57257 6 82070761 to 82070769 8 + TSS region transcription start site region 57257
Cpgi17571 6 82091754 to 82092214 460 CpG island CpG island 17571
Gm40381 6 82119768 to 82126072 6304 + lncRNA gene predicted gene, 40381
Gm31861 6 82242174 to 82242845 671 + pseudogene predicted gene, 31861
Gm44209 6 82318831 to 82322983 4152 - unclassified gene predicted gene, 44209
Cpgi17572 6 82401655 to 82401837 182 CpG island CpG island 17572
Tacr1 6 82402334 to 82560104 157770 + protein coding gene tachykinin receptor 1
Cpgi17573 6 82402601 to 82403175 574 CpG island CpG island 17573
Tssr57258 6 82403030 to 82403044 14 + TSS region transcription start site region 57258
Pole4 6 82618924 to 82652933 34009 - protein coding gene polymerase (DNA-directed), epsilon 4 (p12 subunit)
Cpgi17574 6 82652395 to 82653318 923 CpG island CpG island 17574
Tssr61578 6 82652466 to 82652485 19 - TSS region transcription start site region 61578
Tssr61579 6 82652491 to 82652554 63 - TSS region transcription start site region 61579
Tssr57259 6 82652625 to 82652646 21 + TSS region transcription start site region 57259
Tssr61580 6 82652856 to 82652881 25 - TSS region transcription start site region 61580
D6Mit129 6 82656248 to 82656387 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 129
D6Mit129.1 6 82656308 to 82656520 212 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 129.1