Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:78546150-82586154

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq7 6 25000000 to 80000000 55000000 QTL body mass index QTL 7
D6Mit3 6 78629504 to 78629811 307 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 3
wa1l 6 78629504 to 92040033 13410529 heritable phenotypic marker waved 1-like
Tssr57228 6 78911165 to 78911170 5 + TSS region transcription start site region 57228
Gm23727 6 78911167 to 78911330 163 + snRNA gene predicted gene, 23727
Gm29005 6 78912605 to 78912924 319 - lincRNA gene predicted gene 29005
Gm20362 6 79032044 to 79035869 3825 + lincRNA gene predicted gene, 20362
Gm5311 6 79048116 to 79048824 708 + pseudogene predicted gene 5311
D6Mit98 6 79086977 to 79087103 126 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 98
Tssr1901 6 79096568 to 79096570 2 + TSS region transcription start site region 1901
Gm6261 6 79541208 to 79541967 759 + pseudogene predicted gene 6261
Gm44271 6 79688845 to 79710914 22069 + lincRNA gene predicted gene, 44271
Gm20594 6 79818031 to 79818364 333 + protein coding gene predicted gene, 20594
Cpgi17565 6 79818096 to 79818344 248 CpG island CpG island 17565
Tssr57229 6 79818252 to 79818273 21 + TSS region transcription start site region 57229
D6Mit127 6 79878695 to 79878829 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 127
Gm4409 6 79926414 to 80023156 96742 - antisense lncRNA gene predicted gene 4409
D6Mit280 6 80007170 to 80007293 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 280
Lrrtm4 6 80018877 to 80810143 791266 + protein coding gene leucine rich repeat transmembrane neuronal 4
Tssr57230 6 80018905 to 80018945 40 + TSS region transcription start site region 57230
Tssr57231 6 80018957 to 80018997 40 + TSS region transcription start site region 57231
Tssr57232 6 80019008 to 80019030 22 + TSS region transcription start site region 57232
Tssr57233 6 80019068 to 80019079 11 + TSS region transcription start site region 57233
Cpgi17566 6 80022854 to 80023032 178 CpG island CpG island 17566
Gm44240 6 80048676 to 80051329 2653 + unclassified gene predicted gene, 44240
Tssr57234 6 80068042 to 80068045 3 + TSS region transcription start site region 57234
Tssr57235 6 80070710 to 80070741 31 + TSS region transcription start site region 57235
Gm32091 6 80143742 to 80166659 22917 + lncRNA gene predicted gene, 32091
Tssr57236 6 80149600 to 80149609 9 + TSS region transcription start site region 57236
Tssr57237 6 80173795 to 80173807 12 + TSS region transcription start site region 57237
Tssr57238 6 80174080 to 80174089 9 + TSS region transcription start site region 57238
Tssr57239 6 80174103 to 80174112 9 + TSS region transcription start site region 57239
Tssr1902 6 80185714 to 80185747 33 - TSS region transcription start site region 1902
Tssr57240 6 80192566 to 80192572 6 + TSS region transcription start site region 57240
Tssr57241 6 80214753 to 80214784 31 + TSS region transcription start site region 57241
D6Mit176 6 80217118 to 80217217 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 176
Gm44228 6 80217451 to 80219476 2025 + unclassified gene predicted gene, 44228
Gm44230 6 80268496 to 80272045 3549 + unclassified gene predicted gene, 44230
Gm20371 6 80302613 to 80304368 1755 + unclassified gene predicted gene, 20371
Tssr57242 6 80314451 to 80314460 9 + TSS region transcription start site region 57242
Gm44241 6 80319192 to 80320853 1661 + unclassified gene predicted gene, 44241
D6Abb1e 6 80371275 to 80371531 256 DNA segment DNA segment, Chr 6, Abbott 1 expressed
Tssr57243 6 80401605 to 80401612 7 + TSS region transcription start site region 57243
Gm44229 6 80445350 to 80447836 2486 + unclassified gene predicted gene, 44229
Tssr57244 6 80458746 to 80458747 1 + TSS region transcription start site region 57244
Im4 6 80484738 to 80484905 167 QTL immunoregulatory 4
D6Mit5 6 80484738 to 80484905 167 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 5
D6Mit282 6 80493876 to 80493990 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 282
C030013C02Rik 6 80504873 to 80505344 471 unclassified gene RIKEN cDNA C030013C02 gene
Gm44242 6 80514594 to 80517314 2720 + unclassified gene predicted gene, 44242
Tssr57245 6 80517244 to 80517264 20 + TSS region transcription start site region 57245
Tssr57246 6 80566150 to 80566154 4 + TSS region transcription start site region 57246
D6Mit4 6 80638709 to 80638806 97 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 4
Gm44231 6 80655029 to 80659103 4074 + unclassified gene predicted gene, 44231
D6Mit212 6 80700081 to 80700213 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 212
Tssr57247 6 80809572 to 80809606 34 + TSS region transcription start site region 57247
Gm43900 6 80827138 to 80829806 2668 + unclassified gene predicted gene, 43900
Tssr61570 6 81033764 to 81033775 11 - TSS region transcription start site region 61570
D6Mit281 6 81233192 to 81233313 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 281
Gm43901 6 81420806 to 81421258 452 - pseudogene predicted gene, 43901
Gm38838 6 81428997 to 81446257 17260 - lncRNA gene predicted gene, 38838
Gm26264 6 81638311 to 81638469 158 + snRNA gene predicted gene, 26264
Gm38839 6 81707217 to 81716200 8983 - lincRNA gene predicted gene, 38839
Gm32223 6 81718461 to 81729327 10866 - lncRNA gene predicted gene, 32223
Gm22530 6 81806791 to 81806908 117 + snoRNA gene predicted gene, 22530
Gm4874 6 81840734 to 81841362 628 - pseudogene predicted gene 4874
Tssr61571 6 81841446 to 81841447 1 - TSS region transcription start site region 61571
Gm38840 6 81864244 to 81875864 11620 - pseudogene predicted gene, 38840
1700097M23Rik 6 81893818 to 81895339 1521 - unclassified gene RIKEN cDNA 1700097M23 gene
Mir7232 6 81895590 to 81895663 73 - miRNA gene microRNA 7232
Mir468 6 81896599 to 81896676 77 - miRNA gene microRNA 468
1700009C05Rik 6 81900465 to 81910800 10335 - lincRNA gene RIKEN cDNA 1700009C05 gene
Cpgi17567 6 81910401 to 81910700 299 CpG island CpG island 17567
Tssr61572 6 81910423 to 81910429 6 - TSS region transcription start site region 61572
Tssr61573 6 81910448 to 81910470 22 - TSS region transcription start site region 61573
Tssr61574 6 81910480 to 81910515 35 - TSS region transcription start site region 61574
Tssr57248 6 81911948 to 81911952 4 + TSS region transcription start site region 57248
Gm38841 6 81913588 to 81920429 6841 + lncRNA gene predicted gene, 38841
Cpgi17568 6 81923359 to 81924176 817 CpG island CpG island 17568
Gcfc2 6 81923635 to 81959098 35463 + protein coding gene GC-rich sequence DNA binding factor 2
Tssr57249 6 81923645 to 81923706 61 + TSS region transcription start site region 57249
Mrpl19 6 81957851 to 81965958 8107 - protein coding gene mitochondrial ribosomal protein L19
Cpgi17569 6 81965391 to 81966058 667 CpG island CpG island 17569
Tssr61575 6 81965665 to 81965679 14 - TSS region transcription start site region 61575
Tssr61576 6 81965925 to 81965962 37 - TSS region transcription start site region 61576
D6Mit210 6 81970166 to 81970313 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 210
D6Dcr19 6 81970186 to 81970310 124 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 19
Gm38842 6 81971600 to 81972958 1358 - lncRNA gene predicted gene, 38842
D6Dcr20 6 81973792 to 81973896 104 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 20
D6Mit386 6 81975747 to 81975852 105 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 386
Gm44202 6 81985748 to 81986743 995 - lincRNA gene predicted gene, 44202
Gm20383 6 81989926 to 81992426 2500 + lincRNA gene predicted gene, 20383
Gm32378 6 82025881 to 82033719 7838 - lncRNA gene predicted gene, 32378
Eva1a 6 82041048 to 82093099 52051 + protein coding gene eva-1 homolog A (C. elegans)
Cpgi17570 6 82041415 to 82042317 902 CpG island CpG island 17570
Tssr57250 6 82041645 to 82041698 53 + TSS region transcription start site region 57250
Tssr57251 6 82041707 to 82041719 12 + TSS region transcription start site region 57251
Tssr57252 6 82041789 to 82041802 13 + TSS region transcription start site region 57252
Gm15864 6 82050453 to 82052581 2128 - antisense lncRNA gene predicted gene 15864
Tssr57253 6 82052316 to 82052330 14 + TSS region transcription start site region 57253
Tssr61577 6 82052610 to 82052621 11 - TSS region transcription start site region 61577
Tssr57254 6 82070677 to 82070688 11 + TSS region transcription start site region 57254
Tssr57255 6 82070712 to 82070725 13 + TSS region transcription start site region 57255
Tssr57256 6 82070730 to 82070751 21 + TSS region transcription start site region 57256
Tssr57257 6 82070761 to 82070769 8 + TSS region transcription start site region 57257
Cpgi17571 6 82091754 to 82092214 460 CpG island CpG island 17571
Gm40381 6 82119768 to 82126072 6304 + lncRNA gene predicted gene, 40381
Gm31861 6 82242174 to 82242845 671 + pseudogene predicted gene, 31861
Gm44209 6 82318831 to 82322983 4152 - unclassified gene predicted gene, 44209
Cpgi17572 6 82401655 to 82401837 182 CpG island CpG island 17572
Tacr1 6 82402334 to 82560104 157770 + protein coding gene tachykinin receptor 1
Cpgi17573 6 82402601 to 82403175 574 CpG island CpG island 17573
Tssr57258 6 82403030 to 82403044 14 + TSS region transcription start site region 57258
Dbm1 6 121115387 to 78629504 -42485883 QTL diabetes modifier 1