Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:77571150-83561154

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564 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq7 6 25000000 to 80000000 55000000 QTL body mass index QTL 7
Mrdq5 6 32850650 to 78238974 45388324 QTL modifier of retinal degeneration QTL 5
Pwgrq5 6 43826813 to 77811523 33984710 QTL pre-weaning growth rate QTL 5
Ogrq3 6 43826813 to 77811523 33984710 QTL overall growth rate QTL 3
Pwbwq10 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 10
Pwbwq11 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 11
Pwbwq12 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 12
Pwgrq16 6 43826813 to 77811523 33984710 QTL post-weaning growth rate QTL 16
Ctnna2 6 76881637 to 77979699 1098062 - protein coding gene catenin (cadherin associated protein), alpha 2
Gm44286 6 77586995 to 77588481 1486 - unclassified gene predicted gene, 44286
Gm38837 6 77598739 to 77605174 6435 - lncRNA gene predicted gene, 38837
Gm44288 6 77692979 to 77695773 2794 - unclassified gene predicted gene, 44288
Gm44437 6 77745745 to 77749782 4037 - unclassified gene predicted gene, 44437
D6Mit246 6 77746557 to 77746664 107 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 246
Tssr61537 6 77758421 to 77758445 24 - TSS region transcription start site region 61537
Cpgi17564 6 77979301 to 77980123 822 CpG island CpG island 17564
Tssr61538 6 77979482 to 77979500 18 - TSS region transcription start site region 61538
Tssr61539 6 77979515 to 77979622 107 - TSS region transcription start site region 61539
Tssr61540 6 77979652 to 77979708 56 - TSS region transcription start site region 61540
Tssr61541 6 77979730 to 77979735 5 - TSS region transcription start site region 61541
Gm44255 6 77984516 to 77986568 2052 + unclassified gene predicted gene, 44255
Alh1 6 78000000 to 97000000 19000000 QTL amplitude of lateral head displacement 1
Gm21045 6 78068574 to 78069593 1019 - pseudogene predicted gene, 21045
Gm5576 6 78215878 to 78217113 1235 + pseudogene predicted pseudogene 5576
Tssr57184 6 78370618 to 78370629 11 + TSS region transcription start site region 57184
Tssr57185 6 78370652 to 78370670 18 + TSS region transcription start site region 57185
Tssr57186 6 78370877 to 78370892 15 + TSS region transcription start site region 57186
Reg3b 6 78370885 to 78373466 2581 + protein coding gene regenerating islet-derived 3 beta
Tssr57187 6 78371042 to 78371050 8 + TSS region transcription start site region 57187
Tssr57188 6 78371170 to 78371183 13 + TSS region transcription start site region 57188
Tssr57189 6 78371189 to 78371206 17 + TSS region transcription start site region 57189
Tssr57190 6 78371222 to 78371227 5 + TSS region transcription start site region 57190
Tssr57191 6 78371790 to 78371826 36 + TSS region transcription start site region 57191
Tssr57192 6 78371830 to 78371837 7 + TSS region transcription start site region 57192
Tssr57193 6 78371848 to 78371866 18 + TSS region transcription start site region 57193
Tssr61542 6 78371857 to 78371877 20 - TSS region transcription start site region 61542
Tssr1894 6 78371894 to 78371912 18 - TSS region transcription start site region 1894
Tssr57194 6 78372097 to 78372138 41 + TSS region transcription start site region 57194
Tssr57195 6 78372140 to 78372184 44 + TSS region transcription start site region 57195
Tssr61543 6 78372209 to 78372218 9 - TSS region transcription start site region 61543
Tssr57196 6 78372823 to 78372864 41 + TSS region transcription start site region 57196
Tssr1895 6 78372864 to 78372872 8 - TSS region transcription start site region 1895
Tssr57197 6 78372867 to 78372895 28 + TSS region transcription start site region 57197
Tssr61544 6 78372890 to 78372905 15 - TSS region transcription start site region 61544
Tssr57198 6 78373226 to 78373236 10 + TSS region transcription start site region 57198
Tssr61545 6 78373231 to 78373242 11 - TSS region transcription start site region 61545
Tssr57199 6 78373353 to 78373364 11 + TSS region transcription start site region 57199
Tssr57200 6 78373394 to 78373404 10 + TSS region transcription start site region 57200
Tssr57201 6 78373415 to 78373422 7 + TSS region transcription start site region 57201
Tssr1896 6 78373430 to 78373437 7 + TSS region transcription start site region 1896
Tssr61546 6 78373461 to 78373464 3 - TSS region transcription start site region 61546
Reg3d 6 78375874 to 78378865 2991 - protein coding gene regenerating islet-derived 3 delta
Tssr61547 6 78378836 to 78378850 14 - TSS region transcription start site region 61547
Tssr61548 6 78378851 to 78378862 11 - TSS region transcription start site region 61548
Tssr61549 6 78378882 to 78378891 9 - TSS region transcription start site region 61549
Tssr61550 6 78378894 to 78378917 23 - TSS region transcription start site region 61550
Tssr61551 6 78378922 to 78378961 39 - TSS region transcription start site region 61551
Tssr61552 6 78378997 to 78379008 11 - TSS region transcription start site region 61552
Tssr57202 6 78380700 to 78380715 15 + TSS region transcription start site region 57202
Reg3a 6 78380709 to 78383827 3118 + protein coding gene regenerating islet-derived 3 alpha
Tssr57203 6 78380721 to 78380739 18 + TSS region transcription start site region 57203
Tssr57204 6 78380741 to 78380765 24 + TSS region transcription start site region 57204
Tssr57205 6 78380767 to 78380780 13 + TSS region transcription start site region 57205
Tssr57206 6 78380792 to 78380818 26 + TSS region transcription start site region 57206
Tssr57207 6 78381068 to 78381079 11 + TSS region transcription start site region 57207
Tssr57208 6 78381839 to 78381841 2 + TSS region transcription start site region 57208
Tssr57209 6 78381903 to 78381914 11 + TSS region transcription start site region 57209
Tssr57210 6 78382007 to 78382016 9 + TSS region transcription start site region 57210
Tssr57211 6 78382045 to 78382057 12 + TSS region transcription start site region 57211
Tssr57212 6 78382180 to 78382196 16 + TSS region transcription start site region 57212
Tssr57213 6 78405148 to 78405158 10 + TSS region transcription start site region 57213
Reg2 6 78405155 to 78408097 2942 + protein coding gene regenerating islet-derived 2
Tssr57214 6 78425973 to 78425985 12 + TSS region transcription start site region 57214
Reg1 6 78425983 to 78428666 2683 + protein coding gene regenerating islet-derived 1
Tssr57215 6 78426040 to 78426049 9 + TSS region transcription start site region 57215
Tssr57216 6 78426192 to 78426201 9 + TSS region transcription start site region 57216
Tssr57217 6 78426949 to 78426979 30 + TSS region transcription start site region 57217
Tssr57218 6 78427374 to 78427388 14 + TSS region transcription start site region 57218
Tssr57219 6 78427397 to 78427433 36 + TSS region transcription start site region 57219
Tssr57220 6 78428151 to 78428161 10 + TSS region transcription start site region 57220
Tssr57221 6 78428484 to 78428497 13 + TSS region transcription start site region 57221
Tssr57222 6 78428551 to 78428562 11 + TSS region transcription start site region 57222
Tssr57223 6 78466265 to 78466271 6 + TSS region transcription start site region 57223
Reg3g 6 78466269 to 78468872 2603 - protein coding gene regenerating islet-derived 3 gamma
Tssr61553 6 78466304 to 78466316 12 - TSS region transcription start site region 61553
Tssr61554 6 78466320 to 78466339 19 - TSS region transcription start site region 61554
Tssr61555 6 78466349 to 78466367 18 - TSS region transcription start site region 61555
Tssr61556 6 78466390 to 78466410 20 - TSS region transcription start site region 61556
Tssr57224 6 78466397 to 78466416 19 + TSS region transcription start site region 57224
Tssr61557 6 78466512 to 78466528 16 - TSS region transcription start site region 61557
Tssr57225 6 78466772 to 78466779 7 + TSS region transcription start site region 57225
Tssr57226 6 78466812 to 78466825 13 + TSS region transcription start site region 57226
Tssr61558 6 78466814 to 78466828 14 - TSS region transcription start site region 61558
Tssr1897 6 78466834 to 78466845 11 - TSS region transcription start site region 1897
Tssr61559 6 78466856 to 78466866 10 - TSS region transcription start site region 61559
Tssr61560 6 78466880 to 78466894 14 - TSS region transcription start site region 61560
Tssr1898 6 78466898 to 78466899 1 - TSS region transcription start site region 1898
Tssr57227 6 78467482 to 78467527 45 + TSS region transcription start site region 57227
Tssr61561 6 78467504 to 78467515 11 - TSS region transcription start site region 61561
Tssr61562 6 78467516 to 78467526 10 - TSS region transcription start site region 61562
Tssr1899 6 78467529 to 78467534 5 - TSS region transcription start site region 1899
Tssr61563 6 78467545 to 78467575 30 - TSS region transcription start site region 61563
Tssr61564 6 78467578 to 78467606 28 - TSS region transcription start site region 61564
Tssr61565 6 78467841 to 78467876 35 - TSS region transcription start site region 61565
Tssr61566 6 78467878 to 78467925 47 - TSS region transcription start site region 61566
Tssr1900 6 78467882 to 78467895 13 + TSS region transcription start site region 1900
Tssr61567 6 78468522 to 78468531 9 - TSS region transcription start site region 61567
Tssr61568 6 78468542 to 78468578 36 - TSS region transcription start site region 61568
Tssr61569 6 78468863 to 78468878 15 - TSS region transcription start site region 61569
Gm21392 6 78482693 to 78483664 971 + pseudogene predicted gene, 21392
Gm6072 6 78496946 to 78497441 495 - pseudogene predicted gene 6072
wa1l 6 78629504 to 92040033 13410529 heritable phenotypic marker waved 1-like
D6Mit3 6 78629504 to 78629811 307 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 3
Tssr57228 6 78911165 to 78911170 5 + TSS region transcription start site region 57228
Gm23727 6 78911167 to 78911330 163 + snRNA gene predicted gene, 23727
Gm29005 6 78912605 to 78912924 319 - lincRNA gene predicted gene 29005
Gm20362 6 79032044 to 79035869 3825 + lincRNA gene predicted gene, 20362
Gm5311 6 79048116 to 79048824 708 + pseudogene predicted gene 5311
D6Mit98 6 79086977 to 79087103 126 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 98
Tssr1901 6 79096568 to 79096570 2 + TSS region transcription start site region 1901
Gm6261 6 79541208 to 79541967 759 + pseudogene predicted gene 6261
Gm44271 6 79688845 to 79710914 22069 + lincRNA gene predicted gene, 44271
Gm20594 6 79818031 to 79818364 333 + protein coding gene predicted gene, 20594
Cpgi17565 6 79818096 to 79818344 248 CpG island CpG island 17565
Tssr57229 6 79818252 to 79818273 21 + TSS region transcription start site region 57229
D6Mit127 6 79878695 to 79878829 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 127
Gm4409 6 79926414 to 80023156 96742 - antisense lncRNA gene predicted gene 4409
D6Mit280 6 80007170 to 80007293 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 280
Lrrtm4 6 80018877 to 80810143 791266 + protein coding gene leucine rich repeat transmembrane neuronal 4
Tssr57230 6 80018905 to 80018945 40 + TSS region transcription start site region 57230
Tssr57231 6 80018957 to 80018997 40 + TSS region transcription start site region 57231
Tssr57232 6 80019008 to 80019030 22 + TSS region transcription start site region 57232
Tssr57233 6 80019068 to 80019079 11 + TSS region transcription start site region 57233
Cpgi17566 6 80022854 to 80023032 178 CpG island CpG island 17566
Gm44240 6 80048676 to 80051329 2653 + unclassified gene predicted gene, 44240
Tssr57234 6 80068042 to 80068045 3 + TSS region transcription start site region 57234
Tssr57235 6 80070710 to 80070741 31 + TSS region transcription start site region 57235
Gm32091 6 80143742 to 80166659 22917 + lncRNA gene predicted gene, 32091
Tssr57236 6 80149600 to 80149609 9 + TSS region transcription start site region 57236
Tssr57237 6 80173795 to 80173807 12 + TSS region transcription start site region 57237
Tssr57238 6 80174080 to 80174089 9 + TSS region transcription start site region 57238
Tssr57239 6 80174103 to 80174112 9 + TSS region transcription start site region 57239
Tssr1902 6 80185714 to 80185747 33 - TSS region transcription start site region 1902
Tssr57240 6 80192566 to 80192572 6 + TSS region transcription start site region 57240
Tssr57241 6 80214753 to 80214784 31 + TSS region transcription start site region 57241
D6Mit176 6 80217118 to 80217217 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 176
Gm44228 6 80217451 to 80219476 2025 + unclassified gene predicted gene, 44228
Gm44230 6 80268496 to 80272045 3549 + unclassified gene predicted gene, 44230
Gm20371 6 80302613 to 80304368 1755 + unclassified gene predicted gene, 20371
Tssr57242 6 80314451 to 80314460 9 + TSS region transcription start site region 57242
Gm44241 6 80319192 to 80320853 1661 + unclassified gene predicted gene, 44241
D6Abb1e 6 80371275 to 80371531 256 DNA segment DNA segment, Chr 6, Abbott 1 expressed
Tssr57243 6 80401605 to 80401612 7 + TSS region transcription start site region 57243
Gm44229 6 80445350 to 80447836 2486 + unclassified gene predicted gene, 44229
Tssr57244 6 80458746 to 80458747 1 + TSS region transcription start site region 57244
D6Mit5 6 80484738 to 80484905 167 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 5
Im4 6 80484738 to 80484905 167 QTL immunoregulatory 4
D6Mit282 6 80493876 to 80493990 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 282
C030013C02Rik 6 80504873 to 80505344 471 unclassified gene RIKEN cDNA C030013C02 gene
Gm44242 6 80514594 to 80517314 2720 + unclassified gene predicted gene, 44242
Tssr57245 6 80517244 to 80517264 20 + TSS region transcription start site region 57245
Tssr57246 6 80566150 to 80566154 4 + TSS region transcription start site region 57246
D6Mit4 6 80638709 to 80638806 97 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 4
Gm44231 6 80655029 to 80659103 4074 + unclassified gene predicted gene, 44231
D6Mit212 6 80700081 to 80700213 132 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 212
Tssr57247 6 80809572 to 80809606 34 + TSS region transcription start site region 57247
Gm43900 6 80827138 to 80829806 2668 + unclassified gene predicted gene, 43900
Tssr61570 6 81033764 to 81033775 11 - TSS region transcription start site region 61570
D6Mit281 6 81233192 to 81233313 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 281
Gm43901 6 81420806 to 81421258 452 - pseudogene predicted gene, 43901
Gm38838 6 81428997 to 81446257 17260 - lncRNA gene predicted gene, 38838
Gm26264 6 81638311 to 81638469 158 + snRNA gene predicted gene, 26264
Gm38839 6 81707217 to 81716200 8983 - lincRNA gene predicted gene, 38839
Gm32223 6 81718461 to 81729327 10866 - lncRNA gene predicted gene, 32223
Gm22530 6 81806791 to 81806908 117 + snoRNA gene predicted gene, 22530
Gm4874 6 81840734 to 81841362 628 - pseudogene predicted gene 4874
Tssr61571 6 81841446 to 81841447 1 - TSS region transcription start site region 61571
Gm38840 6 81864244 to 81875864 11620 - pseudogene predicted gene, 38840
1700097M23Rik 6 81893818 to 81895339 1521 - unclassified gene RIKEN cDNA 1700097M23 gene
Mir7232 6 81895590 to 81895663 73 - miRNA gene microRNA 7232
Mir468 6 81896599 to 81896676 77 - miRNA gene microRNA 468
1700009C05Rik 6 81900465 to 81910800 10335 - lincRNA gene RIKEN cDNA 1700009C05 gene
Cpgi17567 6 81910401 to 81910700 299 CpG island CpG island 17567
Tssr61572 6 81910423 to 81910429 6 - TSS region transcription start site region 61572
Tssr61573 6 81910448 to 81910470 22 - TSS region transcription start site region 61573
Tssr61574 6 81910480 to 81910515 35 - TSS region transcription start site region 61574
Tssr57248 6 81911948 to 81911952 4 + TSS region transcription start site region 57248
Gm38841 6 81913588 to 81920429 6841 + lncRNA gene predicted gene, 38841
Cpgi17568 6 81923359 to 81924176 817 CpG island CpG island 17568
Gcfc2 6 81923635 to 81959098 35463 + protein coding gene GC-rich sequence DNA binding factor 2
Tssr57249 6 81923645 to 81923706 61 + TSS region transcription start site region 57249
Mrpl19 6 81957851 to 81965958 8107 - protein coding gene mitochondrial ribosomal protein L19
Cpgi17569 6 81965391 to 81966058 667 CpG island CpG island 17569
Tssr61575 6 81965665 to 81965679 14 - TSS region transcription start site region 61575
Tssr61576 6 81965925 to 81965962 37 - TSS region transcription start site region 61576
D6Mit210 6 81970166 to 81970313 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 210
D6Dcr19 6 81970186 to 81970310 124 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 19
Gm38842 6 81971600 to 81972958 1358 - lncRNA gene predicted gene, 38842
D6Dcr20 6 81973792 to 81973896 104 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 20
D6Mit386 6 81975747 to 81975852 105 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 386