Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:75982680-78472686

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq5 6 32850650 to 78238974 45388324 QTL modifier of retinal degeneration QTL 5
Pwbwq12 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 12
Pwgrq5 6 43826813 to 77811523 33984710 QTL pre-weaning growth rate QTL 5
Pwgrq16 6 43826813 to 77811523 33984710 QTL post-weaning growth rate QTL 16
Pwbwq10 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 10
Pwbwq11 6 43826813 to 77811523 33984710 QTL post-weaning body weight QTL 11
Ogrq3 6 43826813 to 77811523 33984710 QTL overall growth rate QTL 3
Tssr57176 6 76005318 to 76005319 1 + TSS region transcription start site region 57176
D6Mit187 6 76095466 to 76095613 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 187
Gm5995 6 76121627 to 76122894 1267 + pseudogene predicted gene 5995
Gm44334 6 76181709 to 76181820 111 + miRNA gene predicted gene, 44334
Gm22283 6 76200118 to 76200278 160 - snRNA gene predicted gene, 22283
Tssr61521 6 76210621 to 76210623 2 - TSS region transcription start site region 61521
Gm44126 6 76284416 to 76284929 513 + pseudogene predicted gene, 44126
D6Mit262 6 76373443 to 76373568 125 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 262
D6Dcr18 6 76373459 to 76373584 125 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 18
Tssr1893 6 76381220 to 76381222 2 + TSS region transcription start site region 1893
Gm44163 6 76455391 to 76455865 474 - pseudogene predicted gene, 44163
D6Mit225 6 76488949 to 76489087 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 225
Gm9008 6 76495445 to 76497733 2288 - protein coding gene predicted pseudogene 9008
Gm44166 6 76496082 to 76497524 1442 + antisense lncRNA gene predicted gene, 44166
Tssr61522 6 76498095 to 76498113 18 - TSS region transcription start site region 61522
Tssr57177 6 76632655 to 76632656 1 + TSS region transcription start site region 57177
Gm38836 6 76695452 to 76711577 16125 - lncRNA gene predicted gene, 38836
D6Mit208 6 76703577 to 76703724 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 208
D6Mit359 6 76707270 to 76707541 271 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 359
Gm31860 6 76810336 to 76815549 5213 - lncRNA gene predicted gene, 31860
Ctnna2 6 76881637 to 77979699 1098062 - protein coding gene catenin (cadherin associated protein), alpha 2
Tssr61523 6 76902323 to 76902361 38 - TSS region transcription start site region 61523
5830431M20Rik 6 76987978 to 76989646 1668 unclassified gene RIKEN cDNA 5830431M20 gene
Bwq2 6 77057680 to 77057799 119 QTL body weight QTL 2
D6Mit361 6 77057680 to 77057799 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 361
Tssr61524 6 77227680 to 77227686 6 - TSS region transcription start site region 61524
Cpgi17562 6 77242572 to 77243234 662 CpG island CpG island 17562
Tssr57178 6 77242629 to 77242640 11 + TSS region transcription start site region 57178
Tssr57179 6 77242644 to 77242697 53 + TSS region transcription start site region 57179
Lrrtm1 6 77242689 to 77257791 15102 + protein coding gene leucine rich repeat transmembrane neuronal 1
Tssr57180 6 77242715 to 77242729 14 + TSS region transcription start site region 57180
Tssr57181 6 77243269 to 77243285 16 + TSS region transcription start site region 57181
Cpgi17563 6 77243605 to 77245139 1534 CpG island CpG island 17563
Tssr57182 6 77244021 to 77244032 11 + TSS region transcription start site region 57182
Tssr57183 6 77245245 to 77245249 4 + TSS region transcription start site region 57183
Tssr61525 6 77292235 to 77292236 1 - TSS region transcription start site region 61525
Gm44234 6 77323906 to 77324805 899 - unclassified gene predicted gene, 44234
Tssr61526 6 77349497 to 77349535 38 - TSS region transcription start site region 61526
Tssr61527 6 77349622 to 77349647 25 - TSS region transcription start site region 61527
Tssr61528 6 77377464 to 77377468 4 - TSS region transcription start site region 61528
6330415B21Rik 6 77380260 to 77382459 2199 - lncRNA gene RIKEN cDNA 6330415B21 gene
Tssr61529 6 77394427 to 77394433 6 - TSS region transcription start site region 61529
Gm44435 6 77412300 to 77416418 4118 - unclassified gene predicted gene, 44435
Gm44433 6 77428678 to 77433509 4831 - unclassified gene predicted gene, 44433
Gm44235 6 77471138 to 77474195 3057 - unclassified gene predicted gene, 44235
Tssr61530 6 77472150 to 77472155 5 - TSS region transcription start site region 61530
Tssr61531 6 77476595 to 77476608 13 - TSS region transcription start site region 61531
Tssr61532 6 77476711 to 77476742 31 - TSS region transcription start site region 61532
Tssr61533 6 77478010 to 77478016 6 - TSS region transcription start site region 61533
Tssr61534 6 77511841 to 77511845 4 - TSS region transcription start site region 61534
Tssr61535 6 77526971 to 77526977 6 - TSS region transcription start site region 61535
Gm44438 6 77539847 to 77543082 3235 - unclassified gene predicted gene, 44438
Tssr61536 6 77545184 to 77545213 29 - TSS region transcription start site region 61536
D6Mit19 6 77554468 to 77554666 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 19
Gm44286 6 77586995 to 77588481 1486 - unclassified gene predicted gene, 44286
Gm38837 6 77598739 to 77605174 6435 - lncRNA gene predicted gene, 38837
Gm44288 6 77692979 to 77695773 2794 - unclassified gene predicted gene, 44288
Gm44437 6 77745745 to 77749782 4037 - unclassified gene predicted gene, 44437
D6Mit246 6 77746557 to 77746664 107 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 246
Tssr61537 6 77758421 to 77758445 24 - TSS region transcription start site region 61537
Cpgi17564 6 77979301 to 77980123 822 CpG island CpG island 17564
Tssr61538 6 77979482 to 77979500 18 - TSS region transcription start site region 61538
Tssr61539 6 77979515 to 77979622 107 - TSS region transcription start site region 61539
Tssr61540 6 77979652 to 77979708 56 - TSS region transcription start site region 61540
Tssr61541 6 77979730 to 77979735 5 - TSS region transcription start site region 61541
Gm44255 6 77984516 to 77986568 2052 + unclassified gene predicted gene, 44255
Alh1 6 78000000 to 97000000 19000000 QTL amplitude of lateral head displacement 1
Gm21045 6 78068574 to 78069593 1019 - pseudogene predicted gene, 21045
Gm5576 6 78215878 to 78217113 1235 + pseudogene predicted pseudogene 5576
Tssr57184 6 78370618 to 78370629 11 + TSS region transcription start site region 57184
Tssr57185 6 78370652 to 78370670 18 + TSS region transcription start site region 57185
Tssr57186 6 78370877 to 78370892 15 + TSS region transcription start site region 57186
Reg3b 6 78370885 to 78373466 2581 + protein coding gene regenerating islet-derived 3 beta
Tssr57187 6 78371042 to 78371050 8 + TSS region transcription start site region 57187
Tssr57188 6 78371170 to 78371183 13 + TSS region transcription start site region 57188
Tssr57189 6 78371189 to 78371206 17 + TSS region transcription start site region 57189
Tssr57190 6 78371222 to 78371227 5 + TSS region transcription start site region 57190
Tssr57191 6 78371790 to 78371826 36 + TSS region transcription start site region 57191
Tssr57192 6 78371830 to 78371837 7 + TSS region transcription start site region 57192
Tssr57193 6 78371848 to 78371866 18 + TSS region transcription start site region 57193
Tssr61542 6 78371857 to 78371877 20 - TSS region transcription start site region 61542
Tssr1894 6 78371894 to 78371912 18 - TSS region transcription start site region 1894
Tssr57194 6 78372097 to 78372138 41 + TSS region transcription start site region 57194
Tssr57195 6 78372140 to 78372184 44 + TSS region transcription start site region 57195
Tssr61543 6 78372209 to 78372218 9 - TSS region transcription start site region 61543
Tssr57196 6 78372823 to 78372864 41 + TSS region transcription start site region 57196
Tssr1895 6 78372864 to 78372872 8 - TSS region transcription start site region 1895
Tssr57197 6 78372867 to 78372895 28 + TSS region transcription start site region 57197
Tssr61544 6 78372890 to 78372905 15 - TSS region transcription start site region 61544
Tssr57198 6 78373226 to 78373236 10 + TSS region transcription start site region 57198
Tssr61545 6 78373231 to 78373242 11 - TSS region transcription start site region 61545
Tssr57199 6 78373353 to 78373364 11 + TSS region transcription start site region 57199
Tssr57200 6 78373394 to 78373404 10 + TSS region transcription start site region 57200
Tssr57201 6 78373415 to 78373422 7 + TSS region transcription start site region 57201
Tssr1896 6 78373430 to 78373437 7 + TSS region transcription start site region 1896
Tssr61546 6 78373461 to 78373464 3 - TSS region transcription start site region 61546
Reg3d 6 78375874 to 78378865 2991 - protein coding gene regenerating islet-derived 3 delta
Tssr61547 6 78378836 to 78378850 14 - TSS region transcription start site region 61547
Tssr61548 6 78378851 to 78378862 11 - TSS region transcription start site region 61548
Tssr61549 6 78378882 to 78378891 9 - TSS region transcription start site region 61549
Tssr61550 6 78378894 to 78378917 23 - TSS region transcription start site region 61550
Tssr61551 6 78378922 to 78378961 39 - TSS region transcription start site region 61551
Tssr61552 6 78378997 to 78379008 11 - TSS region transcription start site region 61552
Tssr57202 6 78380700 to 78380715 15 + TSS region transcription start site region 57202
Reg3a 6 78380709 to 78383827 3118 + protein coding gene regenerating islet-derived 3 alpha
Tssr57203 6 78380721 to 78380739 18 + TSS region transcription start site region 57203
Tssr57204 6 78380741 to 78380765 24 + TSS region transcription start site region 57204
Tssr57205 6 78380767 to 78380780 13 + TSS region transcription start site region 57205
Tssr57206 6 78380792 to 78380818 26 + TSS region transcription start site region 57206
Tssr57207 6 78381068 to 78381079 11 + TSS region transcription start site region 57207
Tssr57208 6 78381839 to 78381841 2 + TSS region transcription start site region 57208
Tssr57209 6 78381903 to 78381914 11 + TSS region transcription start site region 57209
Tssr57210 6 78382007 to 78382016 9 + TSS region transcription start site region 57210
Tssr57211 6 78382045 to 78382057 12 + TSS region transcription start site region 57211
Tssr57212 6 78382180 to 78382196 16 + TSS region transcription start site region 57212
Tssr57213 6 78405148 to 78405158 10 + TSS region transcription start site region 57213
Reg2 6 78405155 to 78408097 2942 + protein coding gene regenerating islet-derived 2
Tssr57214 6 78425973 to 78425985 12 + TSS region transcription start site region 57214
Reg1 6 78425983 to 78428666 2683 + protein coding gene regenerating islet-derived 1
Tssr57215 6 78426040 to 78426049 9 + TSS region transcription start site region 57215
Tssr57216 6 78426192 to 78426201 9 + TSS region transcription start site region 57216
Tssr57217 6 78426949 to 78426979 30 + TSS region transcription start site region 57217
Tssr57218 6 78427374 to 78427388 14 + TSS region transcription start site region 57218
Tssr57219 6 78427397 to 78427433 36 + TSS region transcription start site region 57219
Tssr57220 6 78428151 to 78428161 10 + TSS region transcription start site region 57220
Tssr57221 6 78428484 to 78428497 13 + TSS region transcription start site region 57221
Tssr57222 6 78428551 to 78428562 11 + TSS region transcription start site region 57222
Tssr57223 6 78466265 to 78466271 6 + TSS region transcription start site region 57223
Reg3g 6 78466269 to 78468872 2603 - protein coding gene regenerating islet-derived 3 gamma
Tssr61553 6 78466304 to 78466316 12 - TSS region transcription start site region 61553
Tssr61554 6 78466320 to 78466339 19 - TSS region transcription start site region 61554
Tssr61555 6 78466349 to 78466367 18 - TSS region transcription start site region 61555
Tssr61556 6 78466390 to 78466410 20 - TSS region transcription start site region 61556
Tssr57224 6 78466397 to 78466416 19 + TSS region transcription start site region 57224
Tssr61557 6 78466512 to 78466528 16 - TSS region transcription start site region 61557
Tssr57225 6 78466772 to 78466779 7 + TSS region transcription start site region 57225
Tssr57226 6 78466812 to 78466825 13 + TSS region transcription start site region 57226
Tssr61558 6 78466814 to 78466828 14 - TSS region transcription start site region 61558
Tssr1897 6 78466834 to 78466845 11 - TSS region transcription start site region 1897
Tssr61559 6 78466856 to 78466866 10 - TSS region transcription start site region 61559
Tssr61560 6 78466880 to 78466894 14 - TSS region transcription start site region 61560
Tssr1898 6 78466898 to 78466899 1 - TSS region transcription start site region 1898
Tssr57227 6 78467482 to 78467527 45 + TSS region transcription start site region 57227
Tssr61561 6 78467504 to 78467515 11 - TSS region transcription start site region 61561
Tssr61562 6 78467516 to 78467526 10 - TSS region transcription start site region 61562
Tssr1899 6 78467529 to 78467534 5 - TSS region transcription start site region 1899
Tssr61563 6 78467545 to 78467575 30 - TSS region transcription start site region 61563
Tssr61564 6 78467578 to 78467606 28 - TSS region transcription start site region 61564
Tssr61565 6 78467841 to 78467876 35 - TSS region transcription start site region 61565
Tssr61566 6 78467878 to 78467925 47 - TSS region transcription start site region 61566
Tssr1900 6 78467882 to 78467895 13 + TSS region transcription start site region 1900
Tssr61567 6 78468522 to 78468531 9 - TSS region transcription start site region 61567
Tssr61568 6 78468542 to 78468578 36 - TSS region transcription start site region 61568
Tssr61569 6 78468863 to 78468878 15 - TSS region transcription start site region 61569