Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:72813098-74453105

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dbts1 6 18234148 to 73387692 55153544 QTL diabetes 1
Is(In8B2-8B3.1;6C1)1Tshir 6 68148517 to 74207573 6059056 cytogenetic marker Insertion, Chr8 B2-B3.1 into Chr 6C1, Toshihiko Shiroishi 1
Cpgi17553 6 72824988 to 72825228 240 CpG island CpG island 17553
Tssr61487 6 72840990 to 72841001 11 - TSS region transcription start site region 61487
Kcmf1 6 72841114 to 72899979 58865 - protein coding gene potassium channel modulatory factor 1
Tssr61488 6 72842848 to 72842898 50 - TSS region transcription start site region 61488
Tssr61489 6 72851276 to 72851281 5 - TSS region transcription start site region 61489
Tssr57164 6 72854388 to 72854389 1 + TSS region transcription start site region 57164
6030456E01Rik 6 72883604 to 72885455 1851 unclassified gene RIKEN cDNA 6030456E01 gene
Tssr61490 6 72885425 to 72885429 4 - TSS region transcription start site region 61490
D530018E20Rik 6 72894962 to 72895919 957 - unclassified gene RIKEN cDNA D530018E20 gene
Cpgi17554 6 72898693 to 72900853 2160 CpG island CpG island 17554
Tssr57165 6 72898700 to 72898712 12 + TSS region transcription start site region 57165
Tssr61491 6 72899286 to 72899303 17 - TSS region transcription start site region 61491
Tssr61492 6 72899722 to 72899811 89 - TSS region transcription start site region 61492
Tssr61493 6 72899814 to 72899843 29 - TSS region transcription start site region 61493
Tssr61494 6 72899899 to 72899951 52 - TSS region transcription start site region 61494
Tssr61495 6 72899952 to 72899985 33 - TSS region transcription start site region 61495
Tssr57166 6 72900076 to 72900093 17 + TSS region transcription start site region 57166
Tssr61496 6 72900130 to 72900216 86 - TSS region transcription start site region 61496
Gm26640 6 72953236 to 72957247 4011 + lincRNA gene predicted gene, 26640
Tssr57167 6 72955103 to 72955128 25 + TSS region transcription start site region 57167
Tssr57168 6 72956689 to 72956709 20 + TSS region transcription start site region 57168
Cpgi17555 6 72956719 to 72956878 159 CpG island CpG island 17555
Tmsb10 6 72957347 to 72958748 1401 - protein coding gene thymosin, beta 10
Tssr61497 6 72957566 to 72957589 23 - TSS region transcription start site region 61497
Tssr61498 6 72957826 to 72957839 13 - TSS region transcription start site region 61498
Cpgi17556 6 72957851 to 72958859 1008 CpG island CpG island 17556
Tssr61499 6 72958078 to 72958089 11 - TSS region transcription start site region 61499
Tssr61500 6 72958097 to 72958244 147 - TSS region transcription start site region 61500
Tssr61501 6 72958399 to 72958411 12 - TSS region transcription start site region 61501
Tssr61502 6 72958423 to 72958429 6 - TSS region transcription start site region 61502
Tssr61503 6 72958434 to 72958446 12 - TSS region transcription start site region 61503
Tssr61504 6 72958450 to 72958453 3 - TSS region transcription start site region 61504
Tssr61505 6 72958465 to 72958496 31 - TSS region transcription start site region 61505
Tssr61506 6 72960725 to 72960747 22 - TSS region transcription start site region 61506
Tssr1892 6 72970479 to 72970482 3 + TSS region transcription start site region 1892
Gm18402 6 72982477 to 72983010 533 - pseudogene predicted gene, 18402
Tssr57169 6 72993553 to 72993577 24 + TSS region transcription start site region 57169
Tssr57170 6 72993588 to 72993623 35 + TSS region transcription start site region 57170
Gm31547 6 73007100 to 73010731 3631 + lncRNA gene predicted gene, 31547
Gm20560 6 73012043 to 73020360 8317 + antisense lncRNA gene predicted gene, 20560
Dnah6 6 73017606 to 73221651 204045 - protein coding gene dynein, axonemal, heavy chain 6
8430413B15Rik 6 73050645 to 73051172 527 unclassified gene RIKEN cDNA 8430413B15 gene
Tssr61507 6 73060288 to 73060309 21 - TSS region transcription start site region 61507
Cpgi17557 6 73087491 to 73087698 207 CpG island CpG island 17557
D6Mit71 6 73097137 to 73097278 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 71
Tssr61508 6 73138947 to 73138951 4 - TSS region transcription start site region 61508
Gm24533 6 73141485 to 73141680 195 - snoRNA gene predicted gene, 24533
Cpgi17558 6 73192665 to 73192896 231 CpG island CpG island 17558
Tssr61509 6 73221608 to 73221622 14 - TSS region transcription start site region 61509
Tssr61510 6 73221625 to 73221664 39 - TSS region transcription start site region 61510
Tssr61511 6 73221665 to 73221676 11 - TSS region transcription start site region 61511
Tssr61512 6 73221692 to 73221701 9 - TSS region transcription start site region 61512
Cpgi17559 6 73221698 to 73221903 205 CpG island CpG island 17559
Tssr61513 6 73221711 to 73221723 12 - TSS region transcription start site region 61513
Tssr57171 6 73223041 to 73223058 17 + TSS region transcription start site region 57171
Gm40377 6 73223050 to 73225064 2014 + lncRNA gene predicted gene, 40377
Cpgi17560 6 73248176 to 73249214 1038 CpG island CpG island 17560
Suclg1 6 73248505 to 73276907 28402 + protein coding gene succinate-CoA ligase, GDP-forming, alpha subunit
Tssr57172 6 73248577 to 73248588 11 + TSS region transcription start site region 57172
Tssr57173 6 73248633 to 73248695 62 + TSS region transcription start site region 57173
Gm38834 6 73248760 to 73254494 5734 + lncRNA gene predicted gene, 38834
Gm40378 6 73287603 to 73289836 2233 - protein coding gene predicted gene, 40378
Gm44475 6 73310218 to 73310641 423 - pseudogene predicted gene, 44475
D6Mit186 6 73387511 to 73387692 181 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 186
Gm24370 6 73392142 to 73392243 101 + miRNA gene predicted gene, 24370
Olfr210-ps1 6 73420317 to 73421218 901 - pseudogene olfactory receptor 210, pseudogene 1
Cpgi17561 6 73429533 to 73430069 536 CpG island CpG island 17561
1700065L07Rik 6 73436986 to 73471021 34035 - lincRNA gene RIKEN cDNA 1700065L07 gene
4931417E11Rik 6 73468573 to 73469667 1094 - protein coding gene RIKEN cDNA 4931417E11 gene
Tssr61514 6 73469466 to 73469473 7 - TSS region transcription start site region 61514
Tssr61515 6 73469510 to 73469521 11 - TSS region transcription start site region 61515
Tssr61516 6 73469577 to 73469647 70 - TSS region transcription start site region 61516
Tssr61517 6 73471064 to 73471075 11 - TSS region transcription start site region 61517
Gm4374 6 73528815 to 73529238 423 - pseudogene predicted gene 4374
Gm31747 6 73586109 to 73608673 22564 - lincRNA gene predicted gene, 31747
Tssr61518 6 73608667 to 73608675 8 - TSS region transcription start site region 61518
Tssr57174 6 73633098 to 73633105 7 + TSS region transcription start site region 57174
D6Mit245 6 73745001 to 73745123 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 245
Gm44225 6 73885664 to 73885849 185 - pseudogene predicted gene, 44225
Tssr61519 6 74025745 to 74025746 1 - TSS region transcription start site region 61519
Tssr57175 6 74050232 to 74050234 2 + TSS region transcription start site region 57175
D6Mit126 6 74055234 to 74055321 87 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 126
D6Mit320.1 6 74207306 to 74207421 115 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 320.1
D6Mit320 6 74207453 to 74207573 120 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 320
D6Mit358 6 74267639 to 74267756 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 358
Gm26179 6 74340950 to 74341081 131 + snoRNA gene predicted gene, 26179
Gm23924 6 74451797 to 74451904 107 - snRNA gene predicted gene, 23924
Recrq9 6 134700000 to 73500000 -61200000 QTL recombination rate in male meiosis QTL 9