Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:72343224-72733260

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp39 6 72318678 to 72345184 26506 - protein coding gene ubiquitin specific peptidase 39
Cpgi17538 6 72344547 to 72345462 915 CpG island CpG island 17538
Tssr61434 6 72345121 to 72345132 11 - TSS region transcription start site region 61434
Tssr61435 6 72345134 to 72345143 9 - TSS region transcription start site region 61435
Tssr61436 6 72345144 to 72345206 62 - TSS region transcription start site region 61436
Gm45051 6 72347029 to 72348458 1429 - antisense lncRNA gene predicted gene 45051
Cpgi17539 6 72347160 to 72347922 762 CpG island CpG island 17539
Tssr57117 6 72347301 to 72347379 78 + TSS region transcription start site region 57117
0610030E20Rik 6 72347317 to 72353148 5831 + protein coding gene RIKEN cDNA 0610030E20 gene
Tssr57118 6 72347382 to 72347390 8 + TSS region transcription start site region 57118
Tssr61437 6 72347680 to 72347753 73 - TSS region transcription start site region 61437
Tssr57119 6 72347710 to 72347714 4 + TSS region transcription start site region 57119
Tssr61438 6 72347818 to 72347829 11 - TSS region transcription start site region 61438
Tssr57120 6 72351841 to 72351885 44 + TSS region transcription start site region 57120
Cpgi17540 6 72354950 to 72356037 1087 CpG island CpG island 17540
Tssr57121 6 72355425 to 72355487 62 + TSS region transcription start site region 57121
Tmem150a 6 72355483 to 72359762 4279 + protein coding gene transmembrane protein 150A
Tssr57122 6 72355745 to 72355765 20 + TSS region transcription start site region 57122
Tssr1887 6 72355773 to 72355785 12 + TSS region transcription start site region 1887
Tssr57123 6 72356104 to 72356127 23 + TSS region transcription start site region 57123
Tssr1888 6 72356172 to 72356200 28 + TSS region transcription start site region 1888
Tssr57124 6 72356209 to 72356221 12 + TSS region transcription start site region 57124
Tssr57125 6 72356232 to 72356256 24 + TSS region transcription start site region 57125
Tssr57126 6 72357953 to 72357966 13 + TSS region transcription start site region 57126
Rnf181 6 72359714 to 72366956 7242 - protein coding gene ring finger protein 181
Tssr61439 6 72361036 to 72361039 3 - TSS region transcription start site region 61439
Tssr61440 6 72361425 to 72361439 14 - TSS region transcription start site region 61440
Cpgi17541 6 72362024 to 72362555 531 CpG island CpG island 17541
Tssr61441 6 72362365 to 72362379 14 - TSS region transcription start site region 61441
Tssr61442 6 72362383 to 72362417 34 - TSS region transcription start site region 61442
Tssr61443 6 72366952 to 72366963 11 - TSS region transcription start site region 61443
Tssr61444 6 72366967 to 72366975 8 - TSS region transcription start site region 61444
Tssr61445 6 72366985 to 72366991 6 - TSS region transcription start site region 61445
Tssr57127 6 72367086 to 72367094 8 + TSS region transcription start site region 57127
Vamp5 6 72368794 to 72380468 11674 - protein coding gene vesicle-associated membrane protein 5
Tssr61446 6 72371247 to 72371294 47 - TSS region transcription start site region 61446
BC019510 6 72372800 to 72374704 1904 unclassified gene cDNA sequence BC019510
Tssr61447 6 72374680 to 72374683 3 - TSS region transcription start site region 61447
A930026B05Rik 6 72375929 to 72376984 1055 unclassified gene RIKEN cDNA A930026B05 gene
Cpgi17542 6 72380044 to 72380742 698 CpG island CpG island 17542
Tssr61448 6 72380416 to 72380483 67 - TSS region transcription start site region 61448
Tssr61449 6 72381680 to 72381705 25 - TSS region transcription start site region 61449
Tssr61450 6 72381754 to 72381759 5 - TSS region transcription start site region 61450
Vamp8 6 72385221 to 72390667 5446 - protein coding gene vesicle-associated membrane protein 8
Tssr57128 6 72385224 to 72385236 12 + TSS region transcription start site region 57128
Tssr57129 6 72390004 to 72390014 10 + TSS region transcription start site region 57129
Cpgi17543 6 72390034 to 72390523 489 CpG island CpG island 17543
Tssr61451 6 72390485 to 72390583 98 - TSS region transcription start site region 61451
Tssr61452 6 72390621 to 72390639 18 - TSS region transcription start site region 61452
Tssr61453 6 72390659 to 72390670 11 - TSS region transcription start site region 61453
Tssr61454 6 72394538 to 72394545 7 - TSS region transcription start site region 61454
Tssr61455 6 72394550 to 72394575 25 - TSS region transcription start site region 61455
Tssr61456 6 72394586 to 72394603 17 - TSS region transcription start site region 61456
Tssr57130 6 72395778 to 72395784 6 + TSS region transcription start site region 57130
Cpgi17544 6 72414116 to 72414553 437 CpG island CpG island 17544
Tssr57131 6 72414301 to 72414319 18 + TSS region transcription start site region 57131
Ggcx 6 72414308 to 72430712 16404 + protein coding gene gamma-glutamyl carboxylase
Tssr57132 6 72414323 to 72414352 29 + TSS region transcription start site region 57132
Tssr57133 6 72414353 to 72414388 35 + TSS region transcription start site region 57133
Tssr1889 6 72430430 to 72430447 17 + TSS region transcription start site region 1889
Mat2a 6 72432799 to 72439558 6759 - protein coding gene methionine adenosyltransferase II, alpha
Tssr61457 6 72437072 to 72437086 14 - TSS region transcription start site region 61457
Cpgi17545 6 72438753 to 72440335 1582 CpG island CpG island 17545
Tssr57134 6 72439034 to 72439065 31 + TSS region transcription start site region 57134
Particl 6 72439051 to 72440610 1559 + lncRNA gene promoter of Mat2a antisense radiation induced circulating long non-coding RNA
Tssr61458 6 72439549 to 72439564 15 - TSS region transcription start site region 61458
Cpgi17546 6 72512461 to 72513032 571 CpG island CpG island 17546
Sh2d6 6 72513641 to 72521707 8066 - protein coding gene SH2 domain containing 6
Tssr61459 6 72520003 to 72520037 34 - TSS region transcription start site region 61459
Tssr61460 6 72520631 to 72520643 12 - TSS region transcription start site region 61460
Tssr61461 6 72521671 to 72521674 3 - TSS region transcription start site region 61461
Tssr61462 6 72521693 to 72521707 14 - TSS region transcription start site region 61462
Tssr61463 6 72521710 to 72521739 29 - TSS region transcription start site region 61463
Tssr61464 6 72522458 to 72522480 22 - TSS region transcription start site region 61464
Tssr61465 6 72522577 to 72522585 8 - TSS region transcription start site region 61465
Tssr1890 6 72538224 to 72538260 36 + TSS region transcription start site region 1890
Tssr1891 6 72544324 to 72544349 25 - TSS region transcription start site region 1891
Capg 6 72544391 to 72562983 18592 + protein coding gene capping protein (actin filament), gelsolin-like
Tssr57135 6 72544411 to 72544449 38 + TSS region transcription start site region 57135
Tssr57136 6 72549163 to 72549191 28 + TSS region transcription start site region 57136
Tssr57137 6 72549252 to 72549264 12 + TSS region transcription start site region 57137
Tssr57138 6 72549414 to 72549428 14 + TSS region transcription start site region 57138
Tssr57139 6 72549430 to 72549478 48 + TSS region transcription start site region 57139
Tssr57140 6 72549732 to 72549763 31 + TSS region transcription start site region 57140
Tssr57141 6 72550183 to 72550209 26 + TSS region transcription start site region 57141
Tssr61466 6 72550844 to 72550863 19 - TSS region transcription start site region 61466
Tssr61467 6 72552219 to 72552231 12 - TSS region transcription start site region 61467
Tssr61468 6 72552724 to 72552781 57 - TSS region transcription start site region 61468
Cpgi17547 6 72552850 to 72553092 242 CpG island CpG island 17547
Tssr57142 6 72555773 to 72555803 30 + TSS region transcription start site region 57142
Tssr57143 6 72555815 to 72555829 14 + TSS region transcription start site region 57143
Tssr57144 6 72556080 to 72556118 38 + TSS region transcription start site region 57144
Tssr57145 6 72556146 to 72556158 12 + TSS region transcription start site region 57145
Tssr57146 6 72556161 to 72556177 16 + TSS region transcription start site region 57146
Tssr57147 6 72557334 to 72557343 9 + TSS region transcription start site region 57147
Tssr61469 6 72557789 to 72557815 26 - TSS region transcription start site region 61469
Tssr57148 6 72558673 to 72558687 14 + TSS region transcription start site region 57148
Tssr57149 6 72558766 to 72558856 90 + TSS region transcription start site region 57149
Elmod3 6 72565922 to 72598413 32491 - protein coding gene ELMO/CED-12 domain containing 3
Cpgi17548 6 72598124 to 72598970 846 CpG island CpG island 17548
Tssr61470 6 72598330 to 72598368 38 - TSS region transcription start site region 61470
Tssr61471 6 72598381 to 72598424 43 - TSS region transcription start site region 61471
Tssr57150 6 72598594 to 72598609 15 + TSS region transcription start site region 57150
Retsat 6 72598628 to 72607488 8860 + protein coding gene retinol saturase (all trans retinol 13,14 reductase)
Gm45053 6 72603004 to 72605502 2498 - unclassified gene predicted gene 45053
Tssr57151 6 72606391 to 72606394 3 + TSS region transcription start site region 57151
Tgoln1 6 72608432 to 72617000 8568 - protein coding gene trans-golgi network protein
Gm20536 6 72609836 to 72616190 6354 + unclassified non-coding RNA gene predicted gene 20536
Tssr61472 6 72610251 to 72610255 4 - TSS region transcription start site region 61472
Tssr61473 6 72610436 to 72610449 13 - TSS region transcription start site region 61473
Tssr61474 6 72610510 to 72610532 22 - TSS region transcription start site region 61474
Tssr61475 6 72610592 to 72610600 8 - TSS region transcription start site region 61475
Tssr61476 6 72611016 to 72611037 21 - TSS region transcription start site region 61476
Tssr61477 6 72611396 to 72611408 12 - TSS region transcription start site region 61477
Cpgi17549 6 72616138 to 72617195 1057 CpG island CpG island 17549
Tssr61478 6 72616725 to 72616756 31 - TSS region transcription start site region 61478
Tssr57152 6 72616855 to 72616918 63 + TSS region transcription start site region 57152
Tcf7l1 6 72626371 to 72789045 162674 - protein coding gene transcription factor 7 like 1 (T cell specific, HMG box)
Tssr61479 6 72627007 to 72627024 17 - TSS region transcription start site region 61479
Tssr57153 6 72627529 to 72627552 23 + TSS region transcription start site region 57153
Tssr57154 6 72629284 to 72629304 20 + TSS region transcription start site region 57154
Gm15401 6 72629288 to 72637717 8429 + antisense lncRNA gene predicted gene 15401
Tssr61480 6 72630550 to 72630559 9 - TSS region transcription start site region 61480
Gm37969 6 72635147 to 72638555 3408 - unclassified gene predicted gene, 37969
Tssr57155 6 72636226 to 72636237 11 + TSS region transcription start site region 57155
Tssr57156 6 72636244 to 72636258 14 + TSS region transcription start site region 57156
Tssr57157 6 72636268 to 72636281 13 + TSS region transcription start site region 57157
Tssr57158 6 72636288 to 72636321 33 + TSS region transcription start site region 57158
Tssr57159 6 72636327 to 72636332 5 + TSS region transcription start site region 57159
Tssr57160 6 72636375 to 72636378 3 + TSS region transcription start site region 57160
Gm38114 6 72642854 to 72644085 1231 - unclassified gene predicted gene, 38114
Gm31391 6 72645556 to 72686530 40974 + lncRNA gene predicted gene, 31391
Gm38320 6 72652320 to 72653600 1280 + unclassified gene predicted gene, 38320
Gm31315 6 72686876 to 72698365 11489 - pseudogene predicted gene, 31315
Tssr61481 6 72690779 to 72690789 10 - TSS region transcription start site region 61481
Tssr57161 6 72699143 to 72699150 7 + TSS region transcription start site region 57161
Tssr57162 6 72699165 to 72699201 36 + TSS region transcription start site region 57162
Gm15402 6 72699214 to 72705090 5876 + antisense lncRNA gene predicted gene 15402
Tssr61482 6 72731038 to 72731042 4 - TSS region transcription start site region 61482