Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:72329353-72499388

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp39 6 72318678 to 72345184 26506 - protein coding gene ubiquitin specific peptidase 39
Tssr61428 6 72333243 to 72333256 13 - TSS region transcription start site region 61428
Tssr61429 6 72333274 to 72333287 13 - TSS region transcription start site region 61429
Tssr61430 6 72333354 to 72333368 14 - TSS region transcription start site region 61430
Tssr61431 6 72333372 to 72333383 11 - TSS region transcription start site region 61431
Tssr61432 6 72333466 to 72333471 5 - TSS region transcription start site region 61432
Tssr61433 6 72338512 to 72338528 16 - TSS region transcription start site region 61433
Cpgi17538 6 72344547 to 72345462 915 CpG island CpG island 17538
Tssr61434 6 72345121 to 72345132 11 - TSS region transcription start site region 61434
Tssr61435 6 72345134 to 72345143 9 - TSS region transcription start site region 61435
Tssr61436 6 72345144 to 72345206 62 - TSS region transcription start site region 61436
Gm45051 6 72347029 to 72348458 1429 - antisense lncRNA gene predicted gene 45051
Cpgi17539 6 72347160 to 72347922 762 CpG island CpG island 17539
Tssr57117 6 72347301 to 72347379 78 + TSS region transcription start site region 57117
0610030E20Rik 6 72347317 to 72353148 5831 + protein coding gene RIKEN cDNA 0610030E20 gene
Tssr57118 6 72347382 to 72347390 8 + TSS region transcription start site region 57118
Tssr61437 6 72347680 to 72347753 73 - TSS region transcription start site region 61437
Tssr57119 6 72347710 to 72347714 4 + TSS region transcription start site region 57119
Tssr61438 6 72347818 to 72347829 11 - TSS region transcription start site region 61438
Tssr57120 6 72351841 to 72351885 44 + TSS region transcription start site region 57120
Cpgi17540 6 72354950 to 72356037 1087 CpG island CpG island 17540
Tssr57121 6 72355425 to 72355487 62 + TSS region transcription start site region 57121
Tmem150a 6 72355483 to 72359762 4279 + protein coding gene transmembrane protein 150A
Tssr57122 6 72355745 to 72355765 20 + TSS region transcription start site region 57122
Tssr1887 6 72355773 to 72355785 12 + TSS region transcription start site region 1887
Tssr57123 6 72356104 to 72356127 23 + TSS region transcription start site region 57123
Tssr1888 6 72356172 to 72356200 28 + TSS region transcription start site region 1888
Tssr57124 6 72356209 to 72356221 12 + TSS region transcription start site region 57124
Tssr57125 6 72356232 to 72356256 24 + TSS region transcription start site region 57125
Tssr57126 6 72357953 to 72357966 13 + TSS region transcription start site region 57126
Rnf181 6 72359714 to 72366956 7242 - protein coding gene ring finger protein 181
Tssr61439 6 72361036 to 72361039 3 - TSS region transcription start site region 61439
Tssr61440 6 72361425 to 72361439 14 - TSS region transcription start site region 61440
Cpgi17541 6 72362024 to 72362555 531 CpG island CpG island 17541
Tssr61441 6 72362365 to 72362379 14 - TSS region transcription start site region 61441
Tssr61442 6 72362383 to 72362417 34 - TSS region transcription start site region 61442
Tssr61443 6 72366952 to 72366963 11 - TSS region transcription start site region 61443
Tssr61444 6 72366967 to 72366975 8 - TSS region transcription start site region 61444
Tssr61445 6 72366985 to 72366991 6 - TSS region transcription start site region 61445
Tssr57127 6 72367086 to 72367094 8 + TSS region transcription start site region 57127
Vamp5 6 72368794 to 72380468 11674 - protein coding gene vesicle-associated membrane protein 5
Tssr61446 6 72371247 to 72371294 47 - TSS region transcription start site region 61446
BC019510 6 72372800 to 72374704 1904 unclassified gene cDNA sequence BC019510
Tssr61447 6 72374680 to 72374683 3 - TSS region transcription start site region 61447
A930026B05Rik 6 72375929 to 72376984 1055 unclassified gene RIKEN cDNA A930026B05 gene
Cpgi17542 6 72380044 to 72380742 698 CpG island CpG island 17542
Tssr61448 6 72380416 to 72380483 67 - TSS region transcription start site region 61448
Tssr61449 6 72381680 to 72381705 25 - TSS region transcription start site region 61449
Tssr61450 6 72381754 to 72381759 5 - TSS region transcription start site region 61450
Vamp8 6 72385221 to 72390667 5446 - protein coding gene vesicle-associated membrane protein 8
Tssr57128 6 72385224 to 72385236 12 + TSS region transcription start site region 57128
Tssr57129 6 72390004 to 72390014 10 + TSS region transcription start site region 57129
Cpgi17543 6 72390034 to 72390523 489 CpG island CpG island 17543
Tssr61451 6 72390485 to 72390583 98 - TSS region transcription start site region 61451
Tssr61452 6 72390621 to 72390639 18 - TSS region transcription start site region 61452
Tssr61453 6 72390659 to 72390670 11 - TSS region transcription start site region 61453
Tssr61454 6 72394538 to 72394545 7 - TSS region transcription start site region 61454
Tssr61455 6 72394550 to 72394575 25 - TSS region transcription start site region 61455
Tssr61456 6 72394586 to 72394603 17 - TSS region transcription start site region 61456
Tssr57130 6 72395778 to 72395784 6 + TSS region transcription start site region 57130
Cpgi17544 6 72414116 to 72414553 437 CpG island CpG island 17544
Tssr57131 6 72414301 to 72414319 18 + TSS region transcription start site region 57131
Ggcx 6 72414308 to 72430712 16404 + protein coding gene gamma-glutamyl carboxylase
Tssr57132 6 72414323 to 72414352 29 + TSS region transcription start site region 57132
Tssr57133 6 72414353 to 72414388 35 + TSS region transcription start site region 57133
Tssr1889 6 72430430 to 72430447 17 + TSS region transcription start site region 1889
Mat2a 6 72432799 to 72439558 6759 - protein coding gene methionine adenosyltransferase II, alpha
Tssr61457 6 72437072 to 72437086 14 - TSS region transcription start site region 61457
Cpgi17545 6 72438753 to 72440335 1582 CpG island CpG island 17545
Tssr57134 6 72439034 to 72439065 31 + TSS region transcription start site region 57134
Particl 6 72439051 to 72440610 1559 + lncRNA gene promoter of Mat2a antisense radiation induced circulating long non-coding RNA
Tssr61458 6 72439549 to 72439564 15 - TSS region transcription start site region 61458