Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:71887403-72307418

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptcd3 6 71880638 to 71908750 28112 - protein coding gene pentatricopeptide repeat domain 3
Tssr61402 6 71888782 to 71888783 1 - TSS region transcription start site region 61402
Cpgi17532 6 71908471 to 71909263 792 CpG island CpG island 17532
Tssr61403 6 71908736 to 71908770 34 - TSS region transcription start site region 61403
Tssr57047 6 71909036 to 71909043 7 + TSS region transcription start site region 57047
Tssr57048 6 71909046 to 71909076 30 + TSS region transcription start site region 57048
Polr1a 6 71909053 to 71979435 70382 + protein coding gene polymerase (RNA) I polypeptide A
Tssr57049 6 71912234 to 71912252 18 + TSS region transcription start site region 57049
Gm19078 6 71918901 to 71919844 943 - pseudogene predicted gene, 19078
Tssr57050 6 71926079 to 71926110 31 + TSS region transcription start site region 57050
Tssr57051 6 71936008 to 71936040 32 + TSS region transcription start site region 57051
Gm26628 6 71961145 to 71963775 2630 - antisense lncRNA gene predicted gene, 26628
Tssr61404 6 72010163 to 72010166 3 - TSS region transcription start site region 61404
9130221F21Rik 6 72013896 to 72042528 28632 - lincRNA gene RIKEN cDNA 9130221F21 gene
Tssr61405 6 72042517 to 72042533 16 - TSS region transcription start site region 61405
Tssr61406 6 72042537 to 72042540 3 - TSS region transcription start site region 61406
Tssr61407 6 72042544 to 72042560 16 - TSS region transcription start site region 61407
Tssr61408 6 72042569 to 72042572 3 - TSS region transcription start site region 61408
D6Mit319 6 72059944 to 72060063 119 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 319
Gm8952 6 72073055 to 72074153 1098 - pseudogene predicted gene 8952
Gm44604 6 72087359 to 72087854 495 - pseudogene predicted gene 44604
Cpgi17533 6 72097206 to 72098446 1240 CpG island CpG island 17533
Tssr57052 6 72097344 to 72097357 13 + TSS region transcription start site region 57052
Tssr57053 6 72097374 to 72097386 12 + TSS region transcription start site region 57053
Tssr57054 6 72097403 to 72097418 15 + TSS region transcription start site region 57054
Tssr57055 6 72097561 to 72097630 69 + TSS region transcription start site region 57055
St3gal5 6 72097592 to 72154571 56979 + protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Tssr57056 6 72097702 to 72097713 11 + TSS region transcription start site region 57056
Tssr57057 6 72097731 to 72097751 20 + TSS region transcription start site region 57057
Tssr57058 6 72097763 to 72097785 22 + TSS region transcription start site region 57058
Tssr57059 6 72097795 to 72097806 11 + TSS region transcription start site region 57059
Tssr57060 6 72097823 to 72097834 11 + TSS region transcription start site region 57060
Tssr57061 6 72098814 to 72098823 9 + TSS region transcription start site region 57061
Tssr57062 6 72099929 to 72099939 10 + TSS region transcription start site region 57062
Tssr57063 6 72104201 to 72104206 5 + TSS region transcription start site region 57063
Gm29438 6 72104201 to 72106813 2612 + sense intronic lncRNA gene predicted gene 29438
Tssr1885 6 72109785 to 72109796 11 + TSS region transcription start site region 1885
Tssr57064 6 72115204 to 72115215 11 + TSS region transcription start site region 57064
Tssr57065 6 72115222 to 72115238 16 + TSS region transcription start site region 57065
Tssr57066 6 72115265 to 72115276 11 + TSS region transcription start site region 57066
Tssr57067 6 72115304 to 72115317 13 + TSS region transcription start site region 57067
4933431G14Rik 6 72120213 to 72123197 2984 - antisense lncRNA gene RIKEN cDNA 4933431G14 gene
Tssr61409 6 72123187 to 72123220 33 - TSS region transcription start site region 61409
Tssr57068 6 72125428 to 72125447 19 + TSS region transcription start site region 57068
Tssr61410 6 72128346 to 72128362 16 - TSS region transcription start site region 61410
Tssr57069 6 72132050 to 72132077 27 + TSS region transcription start site region 57069
Tssr61411 6 72140483 to 72140509 26 - TSS region transcription start site region 61411
Tssr57070 6 72140949 to 72140977 28 + TSS region transcription start site region 57070
Tssr57071 6 72142134 to 72142141 7 + TSS region transcription start site region 57071
Tssr57072 6 72142172 to 72142191 19 + TSS region transcription start site region 57072
Tssr57073 6 72153671 to 72153691 20 + TSS region transcription start site region 57073
Tssr57074 6 72153732 to 72153747 15 + TSS region transcription start site region 57074
Tssr57075 6 72162806 to 72162837 31 + TSS region transcription start site region 57075
Gm38832 6 72162849 to 72167707 4858 + lincRNA gene predicted gene, 38832
Cpgi17534 6 72165020 to 72165262 242 CpG island CpG island 17534
Tssr57076 6 72181297 to 72181298 1 + TSS region transcription start site region 57076
Cpgi17535 6 72189133 to 72189344 211 CpG island CpG island 17535
Atoh8 6 72206177 to 72235577 29400 - protein coding gene atonal bHLH transcription factor 8
Cpgi17536 6 72216599 to 72217180 581 CpG island CpG island 17536
Cpgi17537 6 72234017 to 72236035 2018 CpG island CpG island 17537
Tssr61412 6 72234456 to 72234470 14 - TSS region transcription start site region 61412
Tssr61413 6 72234471 to 72234543 72 - TSS region transcription start site region 61413
Tssr61414 6 72235185 to 72235202 17 - TSS region transcription start site region 61414
Tssr61415 6 72235216 to 72235234 18 - TSS region transcription start site region 61415
Tssr61416 6 72235238 to 72235278 40 - TSS region transcription start site region 61416
Tssr61417 6 72235402 to 72235419 17 - TSS region transcription start site region 61417
Tssr61418 6 72235463 to 72235496 33 - TSS region transcription start site region 61418
Tssr61419 6 72235559 to 72235618 59 - TSS region transcription start site region 61419
Gm30782 6 72250097 to 72254990 4893 - lncRNA gene predicted gene, 30782
Tssr57077 6 72277392 to 72277403 11 + TSS region transcription start site region 57077
Tssr57078 6 72304303 to 72304314 11 + TSS region transcription start site region 57078
Tssr57079 6 72304319 to 72304330 11 + TSS region transcription start site region 57079
Tssr57080 6 72304592 to 72304623 31 + TSS region transcription start site region 57080
Sftpb 6 72304610 to 72314371 9761 + protein coding gene surfactant associated protein B
Tssr57081 6 72304626 to 72304645 19 + TSS region transcription start site region 57081
Tssr57082 6 72305040 to 72305047 7 + TSS region transcription start site region 57082
Tssr57083 6 72305068 to 72305088 20 + TSS region transcription start site region 57083
Tssr57084 6 72305643 to 72305660 17 + TSS region transcription start site region 57084
Tssr57085 6 72305852 to 72305897 45 + TSS region transcription start site region 57085
Tssr57086 6 72305930 to 72305942 12 + TSS region transcription start site region 57086
Tssr57087 6 72305967 to 72305977 10 + TSS region transcription start site region 57087
Tssr57088 6 72305980 to 72306029 49 + TSS region transcription start site region 57088
Tssr57089 6 72306781 to 72306790 9 + TSS region transcription start site region 57089
Tssr57090 6 72306834 to 72306865 31 + TSS region transcription start site region 57090
Tssr57091 6 72306908 to 72306927 19 + TSS region transcription start site region 57091
Tssr57092 6 72307138 to 72307212 74 + TSS region transcription start site region 57092