Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:71880485-72900583

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295 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptcd3 6 71880638 to 71908750 28112 - protein coding gene pentatricopeptide repeat domain 3
Tssr61401 6 71881169 to 71881171 2 - TSS region transcription start site region 61401
Gm22486 6 71882557 to 71882693 136 - snoRNA gene predicted gene, 22486
Tssr61402 6 71888782 to 71888783 1 - TSS region transcription start site region 61402
Cpgi17532 6 71908471 to 71909263 792 CpG island CpG island 17532
Tssr61403 6 71908736 to 71908770 34 - TSS region transcription start site region 61403
Tssr57047 6 71909036 to 71909043 7 + TSS region transcription start site region 57047
Tssr57048 6 71909046 to 71909076 30 + TSS region transcription start site region 57048
Polr1a 6 71909053 to 71979435 70382 + protein coding gene polymerase (RNA) I polypeptide A
Tssr57049 6 71912234 to 71912252 18 + TSS region transcription start site region 57049
Gm19078 6 71918901 to 71919844 943 - pseudogene predicted gene, 19078
Tssr57050 6 71926079 to 71926110 31 + TSS region transcription start site region 57050
Tssr57051 6 71936008 to 71936040 32 + TSS region transcription start site region 57051
Gm26628 6 71961145 to 71963775 2630 - antisense lncRNA gene predicted gene, 26628
Tssr61404 6 72010163 to 72010166 3 - TSS region transcription start site region 61404
9130221F21Rik 6 72013896 to 72042528 28632 - lincRNA gene RIKEN cDNA 9130221F21 gene
Tssr61405 6 72042517 to 72042533 16 - TSS region transcription start site region 61405
Tssr61406 6 72042537 to 72042540 3 - TSS region transcription start site region 61406
Tssr61407 6 72042544 to 72042560 16 - TSS region transcription start site region 61407
Tssr61408 6 72042569 to 72042572 3 - TSS region transcription start site region 61408
D6Mit319 6 72059944 to 72060063 119 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 319
Gm8952 6 72073055 to 72074153 1098 - pseudogene predicted gene 8952
Gm44604 6 72087359 to 72087854 495 - pseudogene predicted gene 44604
Cpgi17533 6 72097206 to 72098446 1240 CpG island CpG island 17533
Tssr57052 6 72097344 to 72097357 13 + TSS region transcription start site region 57052
Tssr57053 6 72097374 to 72097386 12 + TSS region transcription start site region 57053
Tssr57054 6 72097403 to 72097418 15 + TSS region transcription start site region 57054
Tssr57055 6 72097561 to 72097630 69 + TSS region transcription start site region 57055
St3gal5 6 72097592 to 72154571 56979 + protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Tssr57056 6 72097702 to 72097713 11 + TSS region transcription start site region 57056
Tssr57057 6 72097731 to 72097751 20 + TSS region transcription start site region 57057
Tssr57058 6 72097763 to 72097785 22 + TSS region transcription start site region 57058
Tssr57059 6 72097795 to 72097806 11 + TSS region transcription start site region 57059
Tssr57060 6 72097823 to 72097834 11 + TSS region transcription start site region 57060
Tssr57061 6 72098814 to 72098823 9 + TSS region transcription start site region 57061
Tssr57062 6 72099929 to 72099939 10 + TSS region transcription start site region 57062
Tssr57063 6 72104201 to 72104206 5 + TSS region transcription start site region 57063
Gm29438 6 72104201 to 72106813 2612 + sense intronic lncRNA gene predicted gene 29438
Tssr1885 6 72109785 to 72109796 11 + TSS region transcription start site region 1885
Tssr57064 6 72115204 to 72115215 11 + TSS region transcription start site region 57064
Tssr57065 6 72115222 to 72115238 16 + TSS region transcription start site region 57065
Tssr57066 6 72115265 to 72115276 11 + TSS region transcription start site region 57066
Tssr57067 6 72115304 to 72115317 13 + TSS region transcription start site region 57067
4933431G14Rik 6 72120213 to 72123197 2984 - antisense lncRNA gene RIKEN cDNA 4933431G14 gene
Tssr61409 6 72123187 to 72123220 33 - TSS region transcription start site region 61409
Tssr57068 6 72125428 to 72125447 19 + TSS region transcription start site region 57068
Tssr61410 6 72128346 to 72128362 16 - TSS region transcription start site region 61410
Tssr57069 6 72132050 to 72132077 27 + TSS region transcription start site region 57069
Tssr61411 6 72140483 to 72140509 26 - TSS region transcription start site region 61411
Tssr57070 6 72140949 to 72140977 28 + TSS region transcription start site region 57070
Tssr57071 6 72142134 to 72142141 7 + TSS region transcription start site region 57071
Tssr57072 6 72142172 to 72142191 19 + TSS region transcription start site region 57072
Tssr57073 6 72153671 to 72153691 20 + TSS region transcription start site region 57073
Tssr57074 6 72153732 to 72153747 15 + TSS region transcription start site region 57074
Tssr57075 6 72162806 to 72162837 31 + TSS region transcription start site region 57075
Gm38832 6 72162849 to 72167707 4858 + lincRNA gene predicted gene, 38832
Cpgi17534 6 72165020 to 72165262 242 CpG island CpG island 17534
Tssr57076 6 72181297 to 72181298 1 + TSS region transcription start site region 57076
Cpgi17535 6 72189133 to 72189344 211 CpG island CpG island 17535
Atoh8 6 72206177 to 72235577 29400 - protein coding gene atonal bHLH transcription factor 8
Cpgi17536 6 72216599 to 72217180 581 CpG island CpG island 17536
Cpgi17537 6 72234017 to 72236035 2018 CpG island CpG island 17537
Tssr61412 6 72234456 to 72234470 14 - TSS region transcription start site region 61412
Tssr61413 6 72234471 to 72234543 72 - TSS region transcription start site region 61413
Tssr61414 6 72235185 to 72235202 17 - TSS region transcription start site region 61414
Tssr61415 6 72235216 to 72235234 18 - TSS region transcription start site region 61415
Tssr61416 6 72235238 to 72235278 40 - TSS region transcription start site region 61416
Tssr61417 6 72235402 to 72235419 17 - TSS region transcription start site region 61417
Tssr61418 6 72235463 to 72235496 33 - TSS region transcription start site region 61418
Tssr61419 6 72235559 to 72235618 59 - TSS region transcription start site region 61419
Gm30782 6 72250097 to 72254990 4893 - lncRNA gene predicted gene, 30782
Tssr57077 6 72277392 to 72277403 11 + TSS region transcription start site region 57077
Tssr57078 6 72304303 to 72304314 11 + TSS region transcription start site region 57078
Tssr57079 6 72304319 to 72304330 11 + TSS region transcription start site region 57079
Tssr57080 6 72304592 to 72304623 31 + TSS region transcription start site region 57080
Sftpb 6 72304610 to 72314371 9761 + protein coding gene surfactant associated protein B
Tssr57081 6 72304626 to 72304645 19 + TSS region transcription start site region 57081
Tssr57082 6 72305040 to 72305047 7 + TSS region transcription start site region 57082
Tssr57083 6 72305068 to 72305088 20 + TSS region transcription start site region 57083
Tssr57084 6 72305643 to 72305660 17 + TSS region transcription start site region 57084
Tssr57085 6 72305852 to 72305897 45 + TSS region transcription start site region 57085
Tssr57086 6 72305930 to 72305942 12 + TSS region transcription start site region 57086
Tssr57087 6 72305967 to 72305977 10 + TSS region transcription start site region 57087
Tssr57088 6 72305980 to 72306029 49 + TSS region transcription start site region 57088
Tssr57089 6 72306781 to 72306790 9 + TSS region transcription start site region 57089
Tssr57090 6 72306834 to 72306865 31 + TSS region transcription start site region 57090
Tssr57091 6 72306908 to 72306927 19 + TSS region transcription start site region 57091
Tssr57092 6 72307138 to 72307212 74 + TSS region transcription start site region 57092
Tssr57093 6 72309755 to 72309771 16 + TSS region transcription start site region 57093
Tssr57094 6 72309803 to 72309820 17 + TSS region transcription start site region 57094
Tssr57095 6 72309829 to 72309849 20 + TSS region transcription start site region 57095
Tssr57096 6 72309866 to 72309881 15 + TSS region transcription start site region 57096
Tssr57097 6 72310484 to 72310488 4 + TSS region transcription start site region 57097
Tssr57098 6 72310624 to 72310646 22 + TSS region transcription start site region 57098
Tssr57099 6 72310708 to 72310747 39 + TSS region transcription start site region 57099
Tssr61420 6 72310767 to 72310780 13 - TSS region transcription start site region 61420
Tssr57100 6 72312866 to 72312918 52 + TSS region transcription start site region 57100
Tssr57101 6 72313608 to 72313611 3 + TSS region transcription start site region 57101
Tssr57102 6 72313699 to 72313710 11 + TSS region transcription start site region 57102
Tssr57103 6 72313790 to 72313796 6 + TSS region transcription start site region 57103
Tssr57104 6 72313983 to 72313999 16 + TSS region transcription start site region 57104
Tssr61421 6 72314041 to 72314077 36 - TSS region transcription start site region 61421
Tssr57105 6 72314181 to 72314201 20 + TSS region transcription start site region 57105
Tssr57106 6 72314282 to 72314312 30 + TSS region transcription start site region 57106
Tssr57107 6 72314382 to 72314419 37 + TSS region transcription start site region 57107
Tssr57108 6 72314424 to 72314447 23 + TSS region transcription start site region 57108
Tssr57109 6 72314475 to 72314496 21 + TSS region transcription start site region 57109
Tssr57110 6 72314511 to 72314520 9 + TSS region transcription start site region 57110
Tssr57111 6 72314527 to 72314539 12 + TSS region transcription start site region 57111
Tssr1886 6 72314554 to 72314558 4 + TSS region transcription start site region 1886
Tssr57112 6 72314597 to 72314608 11 + TSS region transcription start site region 57112
Tssr61422 6 72314615 to 72314659 44 - TSS region transcription start site region 61422
Tssr61423 6 72314663 to 72314699 36 - TSS region transcription start site region 61423
Tssr61424 6 72314704 to 72314721 17 - TSS region transcription start site region 61424
Tssr57113 6 72314733 to 72314749 16 + TSS region transcription start site region 57113
Tssr61425 6 72314768 to 72314775 7 - TSS region transcription start site region 61425
Tssr61426 6 72314780 to 72314789 9 - TSS region transcription start site region 61426
Tssr57114 6 72314875 to 72314892 17 + TSS region transcription start site region 57114
D6Mit243 6 72314895 to 72315010 115 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 243
Tssr57115 6 72314896 to 72314917 21 + TSS region transcription start site region 57115
Tssr61427 6 72315006 to 72315021 15 - TSS region transcription start site region 61427
Tssr57116 6 72315982 to 72315998 16 + TSS region transcription start site region 57116
Usp39 6 72318678 to 72345184 26506 - protein coding gene ubiquitin specific peptidase 39
Tssr61428 6 72333243 to 72333256 13 - TSS region transcription start site region 61428
Tssr61429 6 72333274 to 72333287 13 - TSS region transcription start site region 61429
Tssr61430 6 72333354 to 72333368 14 - TSS region transcription start site region 61430
Tssr61431 6 72333372 to 72333383 11 - TSS region transcription start site region 61431
Tssr61432 6 72333466 to 72333471 5 - TSS region transcription start site region 61432
Tssr61433 6 72338512 to 72338528 16 - TSS region transcription start site region 61433
Cpgi17538 6 72344547 to 72345462 915 CpG island CpG island 17538
Tssr61434 6 72345121 to 72345132 11 - TSS region transcription start site region 61434
Tssr61435 6 72345134 to 72345143 9 - TSS region transcription start site region 61435
Tssr61436 6 72345144 to 72345206 62 - TSS region transcription start site region 61436
Gm45051 6 72347029 to 72348458 1429 - antisense lncRNA gene predicted gene 45051
Cpgi17539 6 72347160 to 72347922 762 CpG island CpG island 17539
Tssr57117 6 72347301 to 72347379 78 + TSS region transcription start site region 57117
0610030E20Rik 6 72347317 to 72353148 5831 + protein coding gene RIKEN cDNA 0610030E20 gene
Tssr57118 6 72347382 to 72347390 8 + TSS region transcription start site region 57118
Tssr61437 6 72347680 to 72347753 73 - TSS region transcription start site region 61437
Tssr57119 6 72347710 to 72347714 4 + TSS region transcription start site region 57119
Tssr61438 6 72347818 to 72347829 11 - TSS region transcription start site region 61438
Tssr57120 6 72351841 to 72351885 44 + TSS region transcription start site region 57120
Cpgi17540 6 72354950 to 72356037 1087 CpG island CpG island 17540
Tssr57121 6 72355425 to 72355487 62 + TSS region transcription start site region 57121
Tmem150a 6 72355483 to 72359762 4279 + protein coding gene transmembrane protein 150A
Tssr57122 6 72355745 to 72355765 20 + TSS region transcription start site region 57122
Tssr1887 6 72355773 to 72355785 12 + TSS region transcription start site region 1887
Tssr57123 6 72356104 to 72356127 23 + TSS region transcription start site region 57123
Tssr1888 6 72356172 to 72356200 28 + TSS region transcription start site region 1888
Tssr57124 6 72356209 to 72356221 12 + TSS region transcription start site region 57124
Tssr57125 6 72356232 to 72356256 24 + TSS region transcription start site region 57125
Tssr57126 6 72357953 to 72357966 13 + TSS region transcription start site region 57126
Rnf181 6 72359714 to 72366956 7242 - protein coding gene ring finger protein 181
Tssr61439 6 72361036 to 72361039 3 - TSS region transcription start site region 61439
Tssr61440 6 72361425 to 72361439 14 - TSS region transcription start site region 61440
Cpgi17541 6 72362024 to 72362555 531 CpG island CpG island 17541
Tssr61441 6 72362365 to 72362379 14 - TSS region transcription start site region 61441
Tssr61442 6 72362383 to 72362417 34 - TSS region transcription start site region 61442
Tssr61443 6 72366952 to 72366963 11 - TSS region transcription start site region 61443
Tssr61444 6 72366967 to 72366975 8 - TSS region transcription start site region 61444
Tssr61445 6 72366985 to 72366991 6 - TSS region transcription start site region 61445
Tssr57127 6 72367086 to 72367094 8 + TSS region transcription start site region 57127
Vamp5 6 72368794 to 72380468 11674 - protein coding gene vesicle-associated membrane protein 5
Tssr61446 6 72371247 to 72371294 47 - TSS region transcription start site region 61446
BC019510 6 72372800 to 72374704 1904 unclassified gene cDNA sequence BC019510
Tssr61447 6 72374680 to 72374683 3 - TSS region transcription start site region 61447
A930026B05Rik 6 72375929 to 72376984 1055 unclassified gene RIKEN cDNA A930026B05 gene
Cpgi17542 6 72380044 to 72380742 698 CpG island CpG island 17542
Tssr61448 6 72380416 to 72380483 67 - TSS region transcription start site region 61448
Tssr61449 6 72381680 to 72381705 25 - TSS region transcription start site region 61449
Tssr61450 6 72381754 to 72381759 5 - TSS region transcription start site region 61450
Vamp8 6 72385221 to 72390667 5446 - protein coding gene vesicle-associated membrane protein 8
Tssr57128 6 72385224 to 72385236 12 + TSS region transcription start site region 57128
Tssr57129 6 72390004 to 72390014 10 + TSS region transcription start site region 57129
Cpgi17543 6 72390034 to 72390523 489 CpG island CpG island 17543
Tssr61451 6 72390485 to 72390583 98 - TSS region transcription start site region 61451
Tssr61452 6 72390621 to 72390639 18 - TSS region transcription start site region 61452
Tssr61453 6 72390659 to 72390670 11 - TSS region transcription start site region 61453
Tssr61454 6 72394538 to 72394545 7 - TSS region transcription start site region 61454
Tssr61455 6 72394550 to 72394575 25 - TSS region transcription start site region 61455
Tssr61456 6 72394586 to 72394603 17 - TSS region transcription start site region 61456
Tssr57130 6 72395778 to 72395784 6 + TSS region transcription start site region 57130
Cpgi17544 6 72414116 to 72414553 437 CpG island CpG island 17544
Tssr57131 6 72414301 to 72414319 18 + TSS region transcription start site region 57131
Ggcx 6 72414308 to 72430712 16404 + protein coding gene gamma-glutamyl carboxylase
Tssr57132 6 72414323 to 72414352 29 + TSS region transcription start site region 57132
Tssr57133 6 72414353 to 72414388 35 + TSS region transcription start site region 57133
Tssr1889 6 72430430 to 72430447 17 + TSS region transcription start site region 1889
Mat2a 6 72432799 to 72439558 6759 - protein coding gene methionine adenosyltransferase II, alpha
Tssr61457 6 72437072 to 72437086 14 - TSS region transcription start site region 61457
Cpgi17545 6 72438753 to 72440335 1582 CpG island CpG island 17545
Tssr57134 6 72439034 to 72439065 31 + TSS region transcription start site region 57134
Particl 6 72439051 to 72440610 1559 + lncRNA gene promoter of Mat2a antisense radiation induced circulating long non-coding RNA
Tssr61458 6 72439549 to 72439564 15 - TSS region transcription start site region 61458
Cpgi17546 6 72512461 to 72513032 571 CpG island CpG island 17546
Sh2d6 6 72513641 to 72521707 8066 - protein coding gene SH2 domain containing 6
Tssr61459 6 72520003 to 72520037 34 - TSS region transcription start site region 61459
Tssr61460 6 72520631 to 72520643 12 - TSS region transcription start site region 61460
Tssr61461 6 72521671 to 72521674 3 - TSS region transcription start site region 61461
Tssr61462 6 72521693 to 72521707 14 - TSS region transcription start site region 61462