Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:71378553-72268947

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trbv4c2 6 40891296 to 71379171 30487875 QTL T cell receptor beta variable 4, control 2
Cd8a 6 71373427 to 71379171 5744 + protein coding gene CD8 antigen, alpha chain
Mclr 6 71373427 to 71379171 5744 QTL methylcholanthrene lymphoma resistance
Rmnd5a 6 71388634 to 71440637 52003 - protein coding gene required for meiotic nuclear division 5 homolog A
Tssr61364 6 71391296 to 71391313 17 - TSS region transcription start site region 61364
Tssr61365 6 71392422 to 71392435 13 - TSS region transcription start site region 61365
Tssr61366 6 71395009 to 71395023 14 - TSS region transcription start site region 61366
Tssr61367 6 71395024 to 71395034 10 - TSS region transcription start site region 61367
Tssr1884 6 71396106 to 71396116 10 - TSS region transcription start site region 1884
Tssr61368 6 71396156 to 71396184 28 - TSS region transcription start site region 61368
Tssr61369 6 71396200 to 71396221 21 - TSS region transcription start site region 61369
Tssr61370 6 71396231 to 71396242 11 - TSS region transcription start site region 61370
Tssr61371 6 71396279 to 71396290 11 - TSS region transcription start site region 61371
Tssr61372 6 71396291 to 71396306 15 - TSS region transcription start site region 61372
Tssr61373 6 71396950 to 71396975 25 - TSS region transcription start site region 61373
Tssr61374 6 71397345 to 71397350 5 - TSS region transcription start site region 61374
Tssr61375 6 71397362 to 71397369 7 - TSS region transcription start site region 61375
Tssr61376 6 71397379 to 71397396 17 - TSS region transcription start site region 61376
Tssr61377 6 71399338 to 71399348 10 - TSS region transcription start site region 61377
Tssr61378 6 71411586 to 71411595 9 - TSS region transcription start site region 61378
Gm44130 6 71432104 to 71435107 3003 - unclassified gene predicted gene, 44130
Cpgi17524 6 71439614 to 71441495 1881 CpG island CpG island 17524
Tssr61379 6 71440416 to 71440427 11 - TSS region transcription start site region 61379
Tssr61380 6 71440437 to 71440455 18 - TSS region transcription start site region 61380
Tssr61381 6 71440465 to 71440523 58 - TSS region transcription start site region 61381
Tssr61382 6 71440524 to 71440566 42 - TSS region transcription start site region 61382
Tssr61383 6 71440623 to 71440645 22 - TSS region transcription start site region 61383
Gm44172 6 71451992 to 71458998 7006 + lincRNA gene predicted gene, 44172
Gm30582 6 71457502 to 71479149 21647 - lncRNA gene predicted gene, 30582
Gm44186 6 71463311 to 71466062 2751 - unclassified gene predicted gene, 44186
Cpgi17525 6 71493453 to 71495004 1551 CpG island CpG island 17525
Tssr57028 6 71493850 to 71493918 68 + TSS region transcription start site region 57028
Rnf103 6 71493894 to 71510881 16987 + protein coding gene ring finger protein 103
Tssr57029 6 71494055 to 71494073 18 + TSS region transcription start site region 57029
Tssr57030 6 71494074 to 71494085 11 + TSS region transcription start site region 57030
Tssr61384 6 71502830 to 71502838 8 - TSS region transcription start site region 61384
Gm38830 6 71533219 to 71537869 4650 + lncRNA gene predicted gene, 38830
Gm44194 6 71538510 to 71541738 3228 - unclassified gene predicted gene, 44194
1700040L08Rik 6 71543192 to 71544114 922 - antisense lncRNA gene RIKEN cDNA 1700040L08 gene
Cpgi17526 6 71543742 to 71544619 877 CpG island CpG island 17526
Tssr57031 6 71543843 to 71543868 25 + TSS region transcription start site region 57031
Chmp3 6 71543854 to 71581579 37725 + protein coding gene charged multivesicular body protein 3
Tssr57032 6 71543871 to 71543898 27 + TSS region transcription start site region 57032
Tssr57033 6 71543900 to 71543957 57 + TSS region transcription start site region 57033
Tssr57034 6 71543975 to 71543986 11 + TSS region transcription start site region 57034
Tssr57035 6 71544342 to 71544367 25 + TSS region transcription start site region 57035
Tssr57036 6 71545233 to 71545240 7 + TSS region transcription start site region 57036
Tssr61385 6 71555762 to 71555772 10 - TSS region transcription start site region 61385
Kdm3a 6 71588972 to 71632990 44018 - protein coding gene lysine (K)-specific demethylase 3A
Tssr61386 6 71608129 to 71608177 48 - TSS region transcription start site region 61386
Tssr61387 6 71609045 to 71609081 36 - TSS region transcription start site region 61387
Tssr61388 6 71609085 to 71609108 23 - TSS region transcription start site region 61388
Cpgi17527 6 71632025 to 71633623 1598 CpG island CpG island 17527
Tssr61389 6 71632651 to 71632694 43 - TSS region transcription start site region 61389
Tssr61390 6 71632872 to 71632877 5 - TSS region transcription start site region 61390
Tssr61391 6 71632897 to 71632947 50 - TSS region transcription start site region 61391
Tssr61392 6 71632987 to 71632991 4 - TSS region transcription start site region 61392
Tssr61393 6 71633340 to 71633368 28 - TSS region transcription start site region 61393
Gm6063 6 71641612 to 71642096 484 - pseudogene predicted gene 6063
Tssr61394 6 71642136 to 71642138 2 - TSS region transcription start site region 61394
Gm44768 6 71672095 to 71672678 583 - pseudogene predicted gene 44768
Tssr57037 6 71683268 to 71683270 2 + TSS region transcription start site region 57037
Rpl19-ps9 6 71683298 to 71683885 587 + pseudogene ribosomal protein L19, pseudogene 9
Cpgi17528 6 71707020 to 71707204 184 CpG island CpG island 17528
Cpgi17529 6 71707431 to 71708759 1328 CpG island CpG island 17529
Reep1 6 71707681 to 71810710 103029 + protein coding gene receptor accessory protein 1
Tssr57038 6 71707826 to 71707837 11 + TSS region transcription start site region 57038
Tssr57039 6 71707861 to 71707878 17 + TSS region transcription start site region 57039
Tssr57040 6 71707889 to 71707907 18 + TSS region transcription start site region 57040
Tssr57041 6 71722827 to 71722829 2 + TSS region transcription start site region 57041
Tssr57042 6 71729858 to 71729862 4 + TSS region transcription start site region 57042
D6Mit143 6 71782185 to 71782314 129 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 143
Gm44769 6 71790668 to 71793476 2808 + unclassified gene predicted gene 44769
Gm44770 6 71802888 to 71804151 1263 + unclassified gene predicted gene 44770
Tssr57043 6 71809410 to 71809434 24 + TSS region transcription start site region 57043
Mrpl35 6 71812997 to 71823784 10787 - protein coding gene mitochondrial ribosomal protein L35
Cpgi17530 6 71823553 to 71823947 394 CpG island CpG island 17530
Tssr61395 6 71823708 to 71823713 5 - TSS region transcription start site region 61395
Tssr61396 6 71823756 to 71823793 37 - TSS region transcription start site region 61396
Tssr61397 6 71823805 to 71823814 9 - TSS region transcription start site region 61397
Tssr61398 6 71830697 to 71830701 4 - TSS region transcription start site region 61398
Tssr61399 6 71830858 to 71830866 8 - TSS region transcription start site region 61399
Cpgi17531 6 71831008 to 71831929 921 CpG island CpG island 17531
Gm44771 6 71831085 to 71831710 625 - unclassified gene predicted gene 44771
Immt 6 71831090 to 71875266 44176 + protein coding gene inner membrane protein, mitochondrial
Tssr61400 6 71831170 to 71831200 30 - TSS region transcription start site region 61400
Tssr57044 6 71831325 to 71831410 85 + TSS region transcription start site region 57044
Tssr57045 6 71831426 to 71831437 11 + TSS region transcription start site region 57045
Tssr57046 6 71831441 to 71831452 11 + TSS region transcription start site region 57046
Gm17825 6 71869212 to 71870005 793 - pseudogene predicted gene, 17825
Ptcd3 6 71880638 to 71908750 28112 - protein coding gene pentatricopeptide repeat domain 3
Tssr61401 6 71881169 to 71881171 2 - TSS region transcription start site region 61401
Gm22486 6 71882557 to 71882693 136 - snoRNA gene predicted gene, 22486
Tssr61402 6 71888782 to 71888783 1 - TSS region transcription start site region 61402
Cpgi17532 6 71908471 to 71909263 792 CpG island CpG island 17532
Tssr61403 6 71908736 to 71908770 34 - TSS region transcription start site region 61403
Tssr57047 6 71909036 to 71909043 7 + TSS region transcription start site region 57047
Tssr57048 6 71909046 to 71909076 30 + TSS region transcription start site region 57048
Polr1a 6 71909053 to 71979435 70382 + protein coding gene polymerase (RNA) I polypeptide A
Tssr57049 6 71912234 to 71912252 18 + TSS region transcription start site region 57049
Gm19078 6 71918901 to 71919844 943 - pseudogene predicted gene, 19078
Tssr57050 6 71926079 to 71926110 31 + TSS region transcription start site region 57050
Tssr57051 6 71936008 to 71936040 32 + TSS region transcription start site region 57051
Gm26628 6 71961145 to 71963775 2630 - antisense lncRNA gene predicted gene, 26628
Tssr61404 6 72010163 to 72010166 3 - TSS region transcription start site region 61404
9130221F21Rik 6 72013896 to 72042528 28632 - lincRNA gene RIKEN cDNA 9130221F21 gene
Tssr61405 6 72042517 to 72042533 16 - TSS region transcription start site region 61405
Tssr61406 6 72042537 to 72042540 3 - TSS region transcription start site region 61406
Tssr61407 6 72042544 to 72042560 16 - TSS region transcription start site region 61407
Tssr61408 6 72042569 to 72042572 3 - TSS region transcription start site region 61408
D6Mit319 6 72059944 to 72060063 119 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 319
Gm8952 6 72073055 to 72074153 1098 - pseudogene predicted gene 8952
Gm44604 6 72087359 to 72087854 495 - pseudogene predicted gene 44604
Cpgi17533 6 72097206 to 72098446 1240 CpG island CpG island 17533
Tssr57052 6 72097344 to 72097357 13 + TSS region transcription start site region 57052
Tssr57053 6 72097374 to 72097386 12 + TSS region transcription start site region 57053
Tssr57054 6 72097403 to 72097418 15 + TSS region transcription start site region 57054
Tssr57055 6 72097561 to 72097630 69 + TSS region transcription start site region 57055
St3gal5 6 72097592 to 72154571 56979 + protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Tssr57056 6 72097702 to 72097713 11 + TSS region transcription start site region 57056
Tssr57057 6 72097731 to 72097751 20 + TSS region transcription start site region 57057
Tssr57058 6 72097763 to 72097785 22 + TSS region transcription start site region 57058
Tssr57059 6 72097795 to 72097806 11 + TSS region transcription start site region 57059
Tssr57060 6 72097823 to 72097834 11 + TSS region transcription start site region 57060
Tssr57061 6 72098814 to 72098823 9 + TSS region transcription start site region 57061
Tssr57062 6 72099929 to 72099939 10 + TSS region transcription start site region 57062
Tssr57063 6 72104201 to 72104206 5 + TSS region transcription start site region 57063
Gm29438 6 72104201 to 72106813 2612 + sense intronic lncRNA gene predicted gene 29438
Tssr1885 6 72109785 to 72109796 11 + TSS region transcription start site region 1885
Tssr57064 6 72115204 to 72115215 11 + TSS region transcription start site region 57064
Tssr57065 6 72115222 to 72115238 16 + TSS region transcription start site region 57065
Tssr57066 6 72115265 to 72115276 11 + TSS region transcription start site region 57066
Tssr57067 6 72115304 to 72115317 13 + TSS region transcription start site region 57067
4933431G14Rik 6 72120213 to 72123197 2984 - antisense lncRNA gene RIKEN cDNA 4933431G14 gene
Tssr61409 6 72123187 to 72123220 33 - TSS region transcription start site region 61409
Tssr57068 6 72125428 to 72125447 19 + TSS region transcription start site region 57068
Tssr61410 6 72128346 to 72128362 16 - TSS region transcription start site region 61410
Tssr57069 6 72132050 to 72132077 27 + TSS region transcription start site region 57069
Tssr61411 6 72140483 to 72140509 26 - TSS region transcription start site region 61411
Tssr57070 6 72140949 to 72140977 28 + TSS region transcription start site region 57070
Tssr57071 6 72142134 to 72142141 7 + TSS region transcription start site region 57071
Tssr57072 6 72142172 to 72142191 19 + TSS region transcription start site region 57072
Tssr57073 6 72153671 to 72153691 20 + TSS region transcription start site region 57073
Tssr57074 6 72153732 to 72153747 15 + TSS region transcription start site region 57074
Tssr57075 6 72162806 to 72162837 31 + TSS region transcription start site region 57075
Gm38832 6 72162849 to 72167707 4858 + lincRNA gene predicted gene, 38832
Cpgi17534 6 72165020 to 72165262 242 CpG island CpG island 17534
Tssr57076 6 72181297 to 72181298 1 + TSS region transcription start site region 57076
Cpgi17535 6 72189133 to 72189344 211 CpG island CpG island 17535
Atoh8 6 72206177 to 72235577 29400 - protein coding gene atonal bHLH transcription factor 8
Cpgi17536 6 72216599 to 72217180 581 CpG island CpG island 17536
Cpgi17537 6 72234017 to 72236035 2018 CpG island CpG island 17537
Tssr61412 6 72234456 to 72234470 14 - TSS region transcription start site region 61412
Tssr61413 6 72234471 to 72234543 72 - TSS region transcription start site region 61413
Tssr61414 6 72235185 to 72235202 17 - TSS region transcription start site region 61414
Tssr61415 6 72235216 to 72235234 18 - TSS region transcription start site region 61415
Tssr61416 6 72235238 to 72235278 40 - TSS region transcription start site region 61416
Tssr61417 6 72235402 to 72235419 17 - TSS region transcription start site region 61417
Tssr61418 6 72235463 to 72235496 33 - TSS region transcription start site region 61418
Tssr61419 6 72235559 to 72235618 59 - TSS region transcription start site region 61419
Gm30782 6 72250097 to 72254990 4893 - lncRNA gene predicted gene, 30782