Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:71373843-71713868

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trbv4c2 6 40891296 to 71379171 30487875 QTL T cell receptor beta variable 4, control 2
Cd8a 6 71373427 to 71379171 5744 + protein coding gene CD8 antigen, alpha chain
Mclr 6 71373427 to 71379171 5744 QTL methylcholanthrene lymphoma resistance
Tssr57024 6 71374319 to 71374333 14 + TSS region transcription start site region 57024
Tssr57025 6 71374518 to 71374542 24 + TSS region transcription start site region 57025
Tssr57026 6 71374577 to 71374586 9 + TSS region transcription start site region 57026
Tssr57027 6 71377301 to 71377317 16 + TSS region transcription start site region 57027
Rmnd5a 6 71388634 to 71440637 52003 - protein coding gene required for meiotic nuclear division 5 homolog A
Tssr61364 6 71391296 to 71391313 17 - TSS region transcription start site region 61364
Tssr61365 6 71392422 to 71392435 13 - TSS region transcription start site region 61365
Tssr61366 6 71395009 to 71395023 14 - TSS region transcription start site region 61366
Tssr61367 6 71395024 to 71395034 10 - TSS region transcription start site region 61367
Tssr1884 6 71396106 to 71396116 10 - TSS region transcription start site region 1884
Tssr61368 6 71396156 to 71396184 28 - TSS region transcription start site region 61368
Tssr61369 6 71396200 to 71396221 21 - TSS region transcription start site region 61369
Tssr61370 6 71396231 to 71396242 11 - TSS region transcription start site region 61370
Tssr61371 6 71396279 to 71396290 11 - TSS region transcription start site region 61371
Tssr61372 6 71396291 to 71396306 15 - TSS region transcription start site region 61372
Tssr61373 6 71396950 to 71396975 25 - TSS region transcription start site region 61373
Tssr61374 6 71397345 to 71397350 5 - TSS region transcription start site region 61374
Tssr61375 6 71397362 to 71397369 7 - TSS region transcription start site region 61375
Tssr61376 6 71397379 to 71397396 17 - TSS region transcription start site region 61376
Tssr61377 6 71399338 to 71399348 10 - TSS region transcription start site region 61377
Tssr61378 6 71411586 to 71411595 9 - TSS region transcription start site region 61378
Gm44130 6 71432104 to 71435107 3003 - unclassified gene predicted gene, 44130
Cpgi17524 6 71439614 to 71441495 1881 CpG island CpG island 17524
Tssr61379 6 71440416 to 71440427 11 - TSS region transcription start site region 61379
Tssr61380 6 71440437 to 71440455 18 - TSS region transcription start site region 61380
Tssr61381 6 71440465 to 71440523 58 - TSS region transcription start site region 61381
Tssr61382 6 71440524 to 71440566 42 - TSS region transcription start site region 61382
Tssr61383 6 71440623 to 71440645 22 - TSS region transcription start site region 61383
Gm44172 6 71451992 to 71458998 7006 + lincRNA gene predicted gene, 44172
Gm30582 6 71457502 to 71479149 21647 - lncRNA gene predicted gene, 30582
Gm44186 6 71463311 to 71466062 2751 - unclassified gene predicted gene, 44186
Cpgi17525 6 71493453 to 71495004 1551 CpG island CpG island 17525
Tssr57028 6 71493850 to 71493918 68 + TSS region transcription start site region 57028
Rnf103 6 71493894 to 71510881 16987 + protein coding gene ring finger protein 103
Tssr57029 6 71494055 to 71494073 18 + TSS region transcription start site region 57029
Tssr57030 6 71494074 to 71494085 11 + TSS region transcription start site region 57030
Tssr61384 6 71502830 to 71502838 8 - TSS region transcription start site region 61384
Gm38830 6 71533219 to 71537869 4650 + lncRNA gene predicted gene, 38830
Gm44194 6 71538510 to 71541738 3228 - unclassified gene predicted gene, 44194
1700040L08Rik 6 71543192 to 71544114 922 - antisense lncRNA gene RIKEN cDNA 1700040L08 gene
Cpgi17526 6 71543742 to 71544619 877 CpG island CpG island 17526
Tssr57031 6 71543843 to 71543868 25 + TSS region transcription start site region 57031
Chmp3 6 71543854 to 71581579 37725 + protein coding gene charged multivesicular body protein 3
Tssr57032 6 71543871 to 71543898 27 + TSS region transcription start site region 57032
Tssr57033 6 71543900 to 71543957 57 + TSS region transcription start site region 57033
Tssr57034 6 71543975 to 71543986 11 + TSS region transcription start site region 57034
Tssr57035 6 71544342 to 71544367 25 + TSS region transcription start site region 57035
Tssr57036 6 71545233 to 71545240 7 + TSS region transcription start site region 57036
Tssr61385 6 71555762 to 71555772 10 - TSS region transcription start site region 61385
Kdm3a 6 71588972 to 71632990 44018 - protein coding gene lysine (K)-specific demethylase 3A
Tssr61386 6 71608129 to 71608177 48 - TSS region transcription start site region 61386
Tssr61387 6 71609045 to 71609081 36 - TSS region transcription start site region 61387
Tssr61388 6 71609085 to 71609108 23 - TSS region transcription start site region 61388
Cpgi17527 6 71632025 to 71633623 1598 CpG island CpG island 17527
Tssr61389 6 71632651 to 71632694 43 - TSS region transcription start site region 61389
Tssr61390 6 71632872 to 71632877 5 - TSS region transcription start site region 61390
Tssr61391 6 71632897 to 71632947 50 - TSS region transcription start site region 61391
Tssr61392 6 71632987 to 71632991 4 - TSS region transcription start site region 61392
Tssr61393 6 71633340 to 71633368 28 - TSS region transcription start site region 61393
Gm6063 6 71641612 to 71642096 484 - pseudogene predicted gene 6063
Tssr61394 6 71642136 to 71642138 2 - TSS region transcription start site region 61394
Gm44768 6 71672095 to 71672678 583 - pseudogene predicted gene 44768
Tssr57037 6 71683268 to 71683270 2 + TSS region transcription start site region 57037
Rpl19-ps9 6 71683298 to 71683885 587 + pseudogene ribosomal protein L19, pseudogene 9
Cpgi17528 6 71707020 to 71707204 184 CpG island CpG island 17528
Cpgi17529 6 71707431 to 71708759 1328 CpG island CpG island 17529
Reep1 6 71707681 to 71810710 103029 + protein coding gene receptor accessory protein 1
Tssr57038 6 71707826 to 71707837 11 + TSS region transcription start site region 57038
Tssr57039 6 71707861 to 71707878 17 + TSS region transcription start site region 57039
Tssr57040 6 71707889 to 71707907 18 + TSS region transcription start site region 57040