Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:70787237-71737255

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203 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sxbq2 6 19912686 to 71322775 51410089 QTL SGC/Knj cross B6 QTL 2
Trbv4c2 6 40891296 to 71379171 30487875 QTL T cell receptor beta variable 4, control 2
Cia6c 6 44465871 to 71119467 26653596 QTL collagen induced arthritis QTL 6c
Rpia 6 70765720 to 70792175 26455 - protein coding gene ribose 5-phosphate isomerase A
Cpgi17513 6 70791474 to 70792404 930 CpG island CpG island 17513
Tssr61333 6 70791997 to 70792017 20 - TSS region transcription start site region 61333
Tssr61334 6 70792020 to 70792030 10 - TSS region transcription start site region 61334
Tssr61335 6 70792036 to 70792049 13 - TSS region transcription start site region 61335
Tssr61336 6 70792155 to 70792199 44 - TSS region transcription start site region 61336
Gm30331 6 70806991 to 70814791 7800 - lncRNA gene predicted gene, 30331
Cpgi17514 6 70824609 to 70824904 295 CpG island CpG island 17514
Tssr56976 6 70824695 to 70824744 49 + TSS region transcription start site region 56976
Cpgi17515 6 70844144 to 70845317 1173 CpG island CpG island 17515
Tssr56977 6 70844499 to 70844579 80 + TSS region transcription start site region 56977
Eif2ak3 6 70844515 to 70905245 60730 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 3
Tssr56978 6 70844583 to 70844594 11 + TSS region transcription start site region 56978
Tssr56979 6 70849462 to 70849464 2 + TSS region transcription start site region 56979
Gm23346 6 70855444 to 70855579 135 + snoRNA gene predicted gene, 23346
Gm43292 6 70883354 to 70885802 2448 - unclassified gene predicted gene 43292
Tssr56980 6 70903708 to 70903715 7 + TSS region transcription start site region 56980
Tex37 6 70913087 to 70918927 5840 - protein coding gene testis expressed 37
Tssr61337 6 70918902 to 70918908 6 - TSS region transcription start site region 61337
Tssr61338 6 70918915 to 70918935 20 - TSS region transcription start site region 61338
Tssr61339 6 70951294 to 70951302 8 - TSS region transcription start site region 61339
Cpgi17516 6 70956179 to 70957401 1222 CpG island CpG island 17516
Tssr56981 6 70956456 to 70956460 4 + TSS region transcription start site region 56981
Foxi3 6 70956606 to 70961066 4460 + protein coding gene forkhead box I3
Tssr56982 6 70965917 to 70965941 24 + TSS region transcription start site region 56982
Tssr56983 6 70968802 to 70968804 2 + TSS region transcription start site region 56983
Cpgi17517 6 71012733 to 71013487 754 CpG island CpG island 17517
Gm23485 6 71039579 to 71039733 154 - snRNA gene predicted gene, 23485
Cpgi17518 6 71048517 to 71048820 303 CpG island CpG island 17518
Cpgi17519 6 71048988 to 71049152 164 CpG island CpG island 17519
Gm38826 6 71087777 to 71106633 18856 - lncRNA gene predicted gene, 38826
Gm43906 6 71105606 to 71106511 905 - unclassified gene predicted gene, 43906
D6Mit17 6 71119218 to 71119467 249 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 17
Rpl34-ps1 6 71124610 to 71124963 353 + pseudogene ribosomal protein L34, pseudogene 1
Thnsl2 6 71128166 to 71144380 16214 - protein coding gene threonine synthase-like 2 (bacterial)
Cpgi17520 6 71143748 to 71144444 696 CpG island CpG island 17520
Tssr61340 6 71144340 to 71144356 16 - TSS region transcription start site region 61340
Tssr61341 6 71144363 to 71144381 18 - TSS region transcription start site region 61341
Gm30391 6 71148589 to 71153688 5099 + lncRNA gene predicted gene, 30391
Gm38827 6 71154105 to 71157968 3863 + lncRNA gene predicted gene, 38827
Gm44427 6 71164799 to 71166119 1320 + lincRNA gene predicted gene, 44427
Tssr56984 6 71199871 to 71199888 17 + TSS region transcription start site region 56984
Fabp1 6 71199888 to 71205023 5135 + protein coding gene fatty acid binding protein 1, liver
Tssr56985 6 71201600 to 71201610 10 + TSS region transcription start site region 56985
Tssr61342 6 71201668 to 71201691 23 - TSS region transcription start site region 61342
Tssr61343 6 71201706 to 71201714 8 - TSS region transcription start site region 61343
D6Mit244 6 71203212 to 71203339 127 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 244
Tssr56986 6 71204900 to 71204932 32 + TSS region transcription start site region 56986
Smyd1 6 71213940 to 71262281 48341 - protein coding gene SET and MYND domain containing 1
Tssr56987 6 71224475 to 71224481 6 + TSS region transcription start site region 56987
Tssr61344 6 71225458 to 71225474 16 - TSS region transcription start site region 61344
Cpgi17521 6 71239462 to 71239668 206 CpG island CpG island 17521
Tssr61345 6 71262237 to 71262255 18 - TSS region transcription start site region 61345
Tssr61346 6 71262484 to 71262496 12 - TSS region transcription start site region 61346
Tssr61347 6 71262540 to 71262584 44 - TSS region transcription start site region 61347
Tssr61348 6 71270714 to 71270726 12 - TSS region transcription start site region 61348
Tssr61349 6 71270731 to 71270748 17 - TSS region transcription start site region 61349
Tssr56988 6 71270874 to 71270929 55 + TSS region transcription start site region 56988
Cpgi17522 6 71271402 to 71272318 916 CpG island CpG island 17522
Tssr61350 6 71271481 to 71271512 31 - TSS region transcription start site region 61350
Tssr56989 6 71271575 to 71271606 31 + TSS region transcription start site region 56989
Mir8112 6 71271671 to 71271801 130 + miRNA gene microRNA 8112
Tssr56990 6 71271672 to 71271743 71 + TSS region transcription start site region 56990
Krcc1 6 71271677 to 71285319 13642 + protein coding gene lysine-rich coiled-coil 1
Gm44321 6 71276494 to 71279348 2854 + unclassified gene predicted gene, 44321
Tssr56991 6 71284097 to 71284106 9 + TSS region transcription start site region 56991
Tssr56992 6 71284298 to 71284319 21 + TSS region transcription start site region 56992
Tssr56993 6 71284351 to 71284432 81 + TSS region transcription start site region 56993
Tssr56994 6 71284453 to 71284465 12 + TSS region transcription start site region 56994
Gm1070 6 71293765 to 71302880 9115 + lincRNA gene predicted gene 1070
Gm38828 6 71312209 to 71322682 10473 - lncRNA gene predicted gene, 38828
Tssr61351 6 71322200 to 71322238 38 - TSS region transcription start site region 61351
Tssr61352 6 71322549 to 71322570 21 - TSS region transcription start site region 61352
Etax6 6 71322621 to 86275719 14953098 QTL ethanol induced ataxia 6
D6Mit16 6 71322621 to 71322775 154 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 16
Bbaa20 6 71322621 to 93464093 22141472 QTL B.burgdorferi-associated arthritis 20
Tssr56995 6 71322754 to 71322765 11 + TSS region transcription start site region 56995
Tssr56996 6 71322775 to 71322844 69 + TSS region transcription start site region 56996
Cd8b1 6 71322812 to 71337451 14639 + protein coding gene CD8 antigen, beta chain 1
Tssr1881 6 71325426 to 71325436 10 + TSS region transcription start site region 1881
Tssr56997 6 71325454 to 71325463 9 + TSS region transcription start site region 56997
Tssr56998 6 71325499 to 71325519 20 + TSS region transcription start site region 56998
Tssr56999 6 71325837 to 71325842 5 + TSS region transcription start site region 56999
Tssr57000 6 71325999 to 71326017 18 + TSS region transcription start site region 57000
Tssr57001 6 71329254 to 71329265 11 + TSS region transcription start site region 57001
Tssr57002 6 71329754 to 71329775 21 + TSS region transcription start site region 57002
Tssr57003 6 71334108 to 71334121 13 + TSS region transcription start site region 57003
D6Mit124 6 71334860 to 71335049 189 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 124
Tssr57004 6 71338652 to 71338670 18 + TSS region transcription start site region 57004
Gm44110 6 71338886 to 71339535 649 - lincRNA gene predicted gene, 44110
Tssr61353 6 71341230 to 71341268 38 - TSS region transcription start site region 61353
Tssr61354 6 71341293 to 71341303 10 - TSS region transcription start site region 61354
Tssr61355 6 71341306 to 71341317 11 - TSS region transcription start site region 61355
Tssr57005 6 71341465 to 71341499 34 + TSS region transcription start site region 57005
Gm44111 6 71349331 to 71349729 398 + pseudogene predicted gene, 44111
Tssr61356 6 71352832 to 71352842 10 - TSS region transcription start site region 61356
Tssr57006 6 71352938 to 71352947 9 + TSS region transcription start site region 57006
Tssr57007 6 71352968 to 71352979 11 + TSS region transcription start site region 57007
Tssr57008 6 71352981 to 71353002 21 + TSS region transcription start site region 57008
Tssr57009 6 71353019 to 71353053 34 + TSS region transcription start site region 57009
Gm44174 6 71353035 to 71373284 20249 + lincRNA gene predicted gene, 44174
Tssr57010 6 71353904 to 71353916 12 + TSS region transcription start site region 57010
Tssr57011 6 71353975 to 71353978 3 + TSS region transcription start site region 57011
Gm44175 6 71354351 to 71360829 6478 - lincRNA gene predicted gene, 44175
Tssr61357 6 71360803 to 71360814 11 - TSS region transcription start site region 61357
Tssr61358 6 71360819 to 71360845 26 - TSS region transcription start site region 61358
Tssr61359 6 71360849 to 71360862 13 - TSS region transcription start site region 61359
Tssr61360 6 71360919 to 71360931 12 - TSS region transcription start site region 61360
Tssr1882 6 71360952 to 71360962 10 + TSS region transcription start site region 1882
Tssr57012 6 71360975 to 71360988 13 + TSS region transcription start site region 57012
Tssr57013 6 71369698 to 71369710 12 + TSS region transcription start site region 57013
Tssr57014 6 71369730 to 71369754 24 + TSS region transcription start site region 57014
Tssr57015 6 71370055 to 71370064 9 + TSS region transcription start site region 57015
Tssr61361 6 71371179 to 71371202 23 - TSS region transcription start site region 61361
Tssr61362 6 71371301 to 71371308 7 - TSS region transcription start site region 61362
Tssr1883 6 71371307 to 71371323 16 + TSS region transcription start site region 1883
Tssr57016 6 71371355 to 71371369 14 + TSS region transcription start site region 57016
Tssr57017 6 71371408 to 71371420 12 + TSS region transcription start site region 57017
Tssr57018 6 71372648 to 71372664 16 + TSS region transcription start site region 57018
Tssr61363 6 71373331 to 71373335 4 - TSS region transcription start site region 61363
Tssr57019 6 71373376 to 71373379 3 + TSS region transcription start site region 57019
Tssr57020 6 71373400 to 71373465 65 + TSS region transcription start site region 57020
Cd8a 6 71373427 to 71379171 5744 + protein coding gene CD8 antigen, alpha chain
Mclr 6 71373427 to 71379171 5744 QTL methylcholanthrene lymphoma resistance
Cpgi17523 6 71373470 to 71373690 220 CpG island CpG island 17523
Tssr57021 6 71373480 to 71373490 10 + TSS region transcription start site region 57021
Tssr57022 6 71373494 to 71373584 90 + TSS region transcription start site region 57022
Tssr57023 6 71373597 to 71373611 14 + TSS region transcription start site region 57023
Tssr57024 6 71374319 to 71374333 14 + TSS region transcription start site region 57024
Tssr57025 6 71374518 to 71374542 24 + TSS region transcription start site region 57025
Tssr57026 6 71374577 to 71374586 9 + TSS region transcription start site region 57026
Tssr57027 6 71377301 to 71377317 16 + TSS region transcription start site region 57027
Rmnd5a 6 71388634 to 71440637 52003 - protein coding gene required for meiotic nuclear division 5 homolog A
Tssr61364 6 71391296 to 71391313 17 - TSS region transcription start site region 61364
Tssr61365 6 71392422 to 71392435 13 - TSS region transcription start site region 61365
Tssr61366 6 71395009 to 71395023 14 - TSS region transcription start site region 61366
Tssr61367 6 71395024 to 71395034 10 - TSS region transcription start site region 61367
Tssr1884 6 71396106 to 71396116 10 - TSS region transcription start site region 1884
Tssr61368 6 71396156 to 71396184 28 - TSS region transcription start site region 61368
Tssr61369 6 71396200 to 71396221 21 - TSS region transcription start site region 61369
Tssr61370 6 71396231 to 71396242 11 - TSS region transcription start site region 61370
Tssr61371 6 71396279 to 71396290 11 - TSS region transcription start site region 61371
Tssr61372 6 71396291 to 71396306 15 - TSS region transcription start site region 61372
Tssr61373 6 71396950 to 71396975 25 - TSS region transcription start site region 61373
Tssr61374 6 71397345 to 71397350 5 - TSS region transcription start site region 61374
Tssr61375 6 71397362 to 71397369 7 - TSS region transcription start site region 61375
Tssr61376 6 71397379 to 71397396 17 - TSS region transcription start site region 61376
Tssr61377 6 71399338 to 71399348 10 - TSS region transcription start site region 61377
Tssr61378 6 71411586 to 71411595 9 - TSS region transcription start site region 61378
Gm44130 6 71432104 to 71435107 3003 - unclassified gene predicted gene, 44130
Cpgi17524 6 71439614 to 71441495 1881 CpG island CpG island 17524
Tssr61379 6 71440416 to 71440427 11 - TSS region transcription start site region 61379
Tssr61380 6 71440437 to 71440455 18 - TSS region transcription start site region 61380
Tssr61381 6 71440465 to 71440523 58 - TSS region transcription start site region 61381
Tssr61382 6 71440524 to 71440566 42 - TSS region transcription start site region 61382
Tssr61383 6 71440623 to 71440645 22 - TSS region transcription start site region 61383
Gm44172 6 71451992 to 71458998 7006 + lincRNA gene predicted gene, 44172
Gm30582 6 71457502 to 71479149 21647 - lncRNA gene predicted gene, 30582
Gm44186 6 71463311 to 71466062 2751 - unclassified gene predicted gene, 44186
Cpgi17525 6 71493453 to 71495004 1551 CpG island CpG island 17525
Tssr57028 6 71493850 to 71493918 68 + TSS region transcription start site region 57028
Rnf103 6 71493894 to 71510881 16987 + protein coding gene ring finger protein 103
Tssr57029 6 71494055 to 71494073 18 + TSS region transcription start site region 57029
Tssr57030 6 71494074 to 71494085 11 + TSS region transcription start site region 57030
Tssr61384 6 71502830 to 71502838 8 - TSS region transcription start site region 61384
Gm38830 6 71533219 to 71537869 4650 + lncRNA gene predicted gene, 38830
Gm44194 6 71538510 to 71541738 3228 - unclassified gene predicted gene, 44194
1700040L08Rik 6 71543192 to 71544114 922 - antisense lncRNA gene RIKEN cDNA 1700040L08 gene
Cpgi17526 6 71543742 to 71544619 877 CpG island CpG island 17526
Tssr57031 6 71543843 to 71543868 25 + TSS region transcription start site region 57031
Chmp3 6 71543854 to 71581579 37725 + protein coding gene charged multivesicular body protein 3
Tssr57032 6 71543871 to 71543898 27 + TSS region transcription start site region 57032
Tssr57033 6 71543900 to 71543957 57 + TSS region transcription start site region 57033
Tssr57034 6 71543975 to 71543986 11 + TSS region transcription start site region 57034
Tssr57035 6 71544342 to 71544367 25 + TSS region transcription start site region 57035
Tssr57036 6 71545233 to 71545240 7 + TSS region transcription start site region 57036
Tssr61385 6 71555762 to 71555772 10 - TSS region transcription start site region 61385
Kdm3a 6 71588972 to 71632990 44018 - protein coding gene lysine (K)-specific demethylase 3A
Tssr61386 6 71608129 to 71608177 48 - TSS region transcription start site region 61386
Tssr61387 6 71609045 to 71609081 36 - TSS region transcription start site region 61387
Tssr61388 6 71609085 to 71609108 23 - TSS region transcription start site region 61388
Cpgi17527 6 71632025 to 71633623 1598 CpG island CpG island 17527
Tssr61389 6 71632651 to 71632694 43 - TSS region transcription start site region 61389
Tssr61390 6 71632872 to 71632877 5 - TSS region transcription start site region 61390
Tssr61391 6 71632897 to 71632947 50 - TSS region transcription start site region 61391
Tssr61392 6 71632987 to 71632991 4 - TSS region transcription start site region 61392
Tssr61393 6 71633340 to 71633368 28 - TSS region transcription start site region 61393
Gm6063 6 71641612 to 71642096 484 - pseudogene predicted gene 6063
Tssr61394 6 71642136 to 71642138 2 - TSS region transcription start site region 61394
Gm44768 6 71672095 to 71672678 583 - pseudogene predicted gene 44768
Tssr57037 6 71683268 to 71683270 2 + TSS region transcription start site region 57037
Rpl19-ps9 6 71683298 to 71683885 587 + pseudogene ribosomal protein L19, pseudogene 9
Cpgi17528 6 71707020 to 71707204 184 CpG island CpG island 17528
Cpgi17529 6 71707431 to 71708759 1328 CpG island CpG island 17529
Reep1 6 71707681 to 71810710 103029 + protein coding gene receptor accessory protein 1
Tssr57038 6 71707826 to 71707837 11 + TSS region transcription start site region 57038
Tssr57039 6 71707861 to 71707878 17 + TSS region transcription start site region 57039