Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:69913250-71123849

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia6c 6 44465871 to 71119467 26653596 QTL collagen induced arthritis QTL 6c
Igk 6 67555636 to 70726754 3171118 + complex/cluster/region immunoglobulin kappa chain complex
Gm43220 6 69927621 to 69927902 281 - pseudogenic gene segment predicted gene 43220
Igkv12-38 6 69943186 to 69943648 462 - gene segment immunoglobulin kappa chain variable 12-38
Tssr61304 6 69943688 to 69943700 12 - TSS region transcription start site region 61304
Igkv5-37 6 69963312 to 69963861 549 - gene segment immunoglobulin kappa variable 5-37
Tssr61305 6 69963881 to 69963897 16 - TSS region transcription start site region 61305
Igkv18-36 6 69992465 to 69992977 512 - gene segment immunoglobulin kappa chain variable 18-36
Tssr61306 6 69992993 to 69993009 16 - TSS region transcription start site region 61306
Igkv1-35 6 70010949 to 70011673 724 - gene segment immunoglobulin kappa variable 1-35
Gm23694 6 70027982 to 70028091 109 - miRNA gene predicted gene, 23694
Tssr1879 6 70031683 to 70031688 5 - TSS region transcription start site region 1879
Gm43586 6 70040338 to 70040647 309 - pseudogenic gene segment predicted gene 43586
Igkv8-34 6 70044112 to 70044678 566 - gene segment immunoglobulin kappa variable 8-34
Igkv7-33 6 70058632 to 70059199 567 - gene segment immunoglobulin kappa chain variable 7-33
Tssr61307 6 70059231 to 70059236 5 - TSS region transcription start site region 61307
Igkv6-32 6 70074024 to 70074584 560 - gene segment immunoglobulin kappa variable 6-32
Tssr61308 6 70074602 to 70074621 19 - TSS region transcription start site region 61308
D6Mit96 6 70075269 to 70075371 102 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 96
Igkv8-31 6 70105860 to 70106179 319 - pseudogenic gene segment immunoglobulin kappa chain variable 8-31
Igkv8-30 6 70117061 to 70117617 556 - gene segment immunoglobulin kappa chain variable 8-30
Tssr61309 6 70117631 to 70117657 26 - TSS region transcription start site region 61309
Gm42818 6 70129652 to 70130638 986 + pseudogene predicted gene 42818
Amd-ps2 6 70130676 to 70132505 1829 + pseudogene S-adenosylmethionine decarboxylase, pseudogene 2
Igkv6-29 6 70138462 to 70139082 620 - gene segment immunoglobulin kappa chain variable 6-29
Igkv8-28 6 70143593 to 70144161 568 - gene segment immunoglobulin kappa variable 8-28
Gm24096 6 70147936 to 70148045 109 - miRNA gene predicted gene, 24096
Igkv8-27 6 70171809 to 70172270 461 - gene segment immunoglobulin kappa chain variable 8-27
Tssr61310 6 70172289 to 70172306 17 - TSS region transcription start site region 61310
Igkv8-26 6 70193228 to 70193797 569 + gene segment immunoglobulin kappa variable 8-26
Gm8828 6 70209552 to 70213767 4215 - pseudogene predicted gene 8828
Tssr56934 6 70215401 to 70215404 3 + TSS region transcription start site region 56934
Igkv6-25 6 70215433 to 70215957 524 + gene segment immunoglobulin kappa chain variable 6-25
Igkv8-24 6 70216858 to 70217421 563 - gene segment immunoglobulin kappa chain variable 8-24
Tssr61311 6 70217449 to 70217452 3 - TSS region transcription start site region 61311
Gm46962 6 70218846 to 70220704 1858 - lncRNA gene predicted gene, 46962
Igkv8-23-1 6 70240427 to 70240710 283 + gene segment immunoglobulin kappa variable 8-23-1
Gm43218 6 70240427 to 70240972 545 - gene segment predicted gene 43218
Igkv6-23 6 70260409 to 70260933 524 - gene segment immunoglobulin kappa variable 6-23
Tssr61312 6 70260959 to 70260964 5 - TSS region transcription start site region 61312
Gm8836 6 70262565 to 70263912 1347 + pseudogene predicted gene 8836
Gm11065 6 70295177 to 70295406 229 + pseudogene predicted gene 11065
Igkv8-22 6 70297554 to 70298119 565 - pseudogenic gene segment immunoglobulin kappa chain variable 8-22
Igkv8-21 6 70314895 to 70315452 557 - gene segment immunoglobulin kappa variable 8-21
Tssr61313 6 70315467 to 70315473 6 - TSS region transcription start site region 61313
Amd-ps5 6 70327036 to 70328024 988 + pseudogene S-adenosylmethionine decarboxylase, pseudogene 5
Igkv6-20 6 70335841 to 70336479 638 - gene segment immunoglobulin kappa variable 6-20
Igkv8-19 6 70340876 to 70341448 572 - gene segment immunoglobulin kappa variable 8-19
Igkv8-18 6 70355877 to 70356445 568 + gene segment immunoglobulin kappa variable 8-18
Gm8848 6 70368458 to 70369800 1342 - pseudogene predicted gene 8848
Tssr56935 6 70371432 to 70371446 14 + TSS region transcription start site region 56935
Igkv6-17 6 70371469 to 70371993 524 + gene segment immunoglobulin kappa variable 6-17
Tssr61314 6 70372627 to 70372635 8 - TSS region transcription start site region 61314
Igkv8-16 6 70386672 to 70387238 566 - gene segment immunoglobulin kappa variable 8-16
Gm42667 6 70405701 to 70405934 233 - pseudogenic gene segment predicted gene 42667
Igkv6-15 6 70406469 to 70406992 523 - gene segment immunoglobulin kappa variable 6-15
Tssr61315 6 70407018 to 70407023 5 - TSS region transcription start site region 61315
Gm8853 6 70408631 to 70409974 1343 + pseudogene predicted gene 8853
Gm10360 6 70424162 to 70424433 271 + pseudogenic gene segment predicted gene 10360
Gm6157 6 70428929 to 70430825 1896 - pseudogene predicted gene 6157
Tssr61316 6 70429968 to 70429981 13 - TSS region transcription start site region 61316
Igkv6-14 6 70434952 to 70435476 524 - gene segment immunoglobulin kappa variable 6-14
Tssr61317 6 70435503 to 70435508 5 - TSS region transcription start site region 61317
Gm8862 6 70437111 to 70438456 1345 + pseudogene predicted gene 8862
Igkv6-13 6 70457503 to 70458036 533 - gene segment immunoglobulin kappa variable 6-13
Tssr61318 6 70458051 to 70458055 4 - TSS region transcription start site region 61318
Gm8872 6 70459665 to 70461005 1340 + pseudogene predicted gene 8872
Gm42720 6 70493364 to 70493663 299 - pseudogenic gene segment predicted gene 42720
Gm42773 6 70495383 to 70495530 147 + pseudogene predicted gene 42773
Igkv3-12-1 6 70497681 to 70498273 592 - pseudogenic gene segment immunoglobulin kappa chain variable 3-12-1
Tssr56936 6 70518201 to 70518209 8 + TSS region transcription start site region 56936
Tssr56937 6 70518240 to 70518252 12 + TSS region transcription start site region 56937
Igkv3-12 6 70518250 to 70518849 599 + gene segment immunoglobulin kappa variable 3-12
Tssr56938 6 70532942 to 70532944 2 + TSS region transcription start site region 56938
Igkv3-11 6 70553239 to 70553862 623 + pseudogenic gene segment immunoglobulin kappa variable 3-11
Tssr56939 6 70572584 to 70572604 20 + TSS region transcription start site region 56939
Igkv3-10 6 70572633 to 70573230 597 + gene segment immunoglobulin kappa variable 3-10
Igkv3-9 6 70588189 to 70588777 588 + gene segment immunoglobulin kappa variable 3-9
Igkv3-8 6 70588875 to 70589452 577 + pseudogenic gene segment immunoglobulin kappa variable 3-8
Tssr56940 6 70607391 to 70607414 23 + TSS region transcription start site region 56940
Igkv3-7 6 70607437 to 70608036 599 + gene segment immunoglobulin kappa variable 3-7
Tssr56941 6 70642363 to 70642385 22 + TSS region transcription start site region 56941
Igkv3-6 6 70642405 to 70642979 574 + pseudogenic gene segment immunoglobulin kappa variable 3-6
Tssr56942 6 70663249 to 70663256 7 + TSS region transcription start site region 56942
Igkv3-5 6 70663298 to 70663895 597 + gene segment immunoglobulin kappa chain variable 3-5
Tssr56943 6 70671759 to 70671787 28 + TSS region transcription start site region 56943
Igkv3-4 6 70671789 to 70672377 588 + gene segment immunoglobulin kappa variable 3-4
Igkv3-3 6 70686946 to 70687534 588 + gene segment immunoglobulin kappa variable 3-3
Tssr56944 6 70698418 to 70698427 9 + TSS region transcription start site region 56944
Tssr56945 6 70698432 to 70698450 18 + TSS region transcription start site region 56945
Igkv3-2 6 70698468 to 70699067 599 + gene segment immunoglobulin kappa variable 3-2
Tssr56946 6 70703531 to 70703555 24 + TSS region transcription start site region 56946
Igkv3-1 6 70703578 to 70704177 599 + gene segment immunoglobulin kappa variable 3-1
Tssr61319 6 70709897 to 70709915 18 - TSS region transcription start site region 61319
Gm46961 6 70713079 to 70719278 6199 - lncRNA gene predicted gene, 46961
Tssr61320 6 70718865 to 70718889 24 - TSS region transcription start site region 61320
Tssr56947 6 70718981 to 70719015 34 + TSS region transcription start site region 56947
Tssr56948 6 70719202 to 70719215 13 + TSS region transcription start site region 56948
Tssr56949 6 70721710 to 70721716 6 + TSS region transcription start site region 56949
Tssr56950 6 70722491 to 70722545 54 + TSS region transcription start site region 56950
Tssr56951 6 70722549 to 70722571 22 + TSS region transcription start site region 56951
Igkj1 6 70722562 to 70722599 37 + gene segment immunoglobulin kappa joining 1
Tssr56952 6 70722838 to 70722851 13 + TSS region transcription start site region 56952
Igkj2 6 70722916 to 70722954 38 + gene segment immunoglobulin kappa joining 2
Igkj3 6 70723223 to 70723260 37 + gene segment immunoglobulin kappa joining 3
Tssr56953 6 70723538 to 70723547 9 + TSS region transcription start site region 56953
Igkj4 6 70723548 to 70723585 37 + gene segment immunoglobulin kappa joining 4
Tssr56954 6 70723660 to 70723679 19 + TSS region transcription start site region 56954
Tssr56955 6 70723874 to 70723900 26 + TSS region transcription start site region 56955
Igkj5 6 70723886 to 70723923 37 + gene segment immunoglobulin kappa joining 5
Tssr56956 6 70725808 to 70725833 25 + TSS region transcription start site region 56956
Tssr56957 6 70726430 to 70726472 42 + TSS region transcription start site region 56957
Igkc 6 70726435 to 70726754 319 + gene segment immunoglobulin kappa constant
Tssr56958 6 70726477 to 70726488 11 + TSS region transcription start site region 56958
Tssr61321 6 70726482 to 70726509 27 - TSS region transcription start site region 61321
Tssr56959 6 70726495 to 70726506 11 + TSS region transcription start site region 56959
Tssr56960 6 70726518 to 70726521 3 + TSS region transcription start site region 56960
Tssr56961 6 70726532 to 70726537 5 + TSS region transcription start site region 56961
Tssr56962 6 70726540 to 70726549 9 + TSS region transcription start site region 56962
Tssr56963 6 70726589 to 70726596 7 + TSS region transcription start site region 56963
Tssr56964 6 70726604 to 70726607 3 + TSS region transcription start site region 56964
Tssr56965 6 70726610 to 70726619 9 + TSS region transcription start site region 56965
Tssr56966 6 70726621 to 70726627 6 + TSS region transcription start site region 56966
Tssr56967 6 70726636 to 70726647 11 + TSS region transcription start site region 56967
Tssr61322 6 70726647 to 70726657 10 - TSS region transcription start site region 61322
Tssr56968 6 70726660 to 70726677 17 + TSS region transcription start site region 56968
Tssr61323 6 70726662 to 70726738 76 - TSS region transcription start site region 61323
Tssr56969 6 70726696 to 70726701 5 + TSS region transcription start site region 56969
Tssr56970 6 70726709 to 70726720 11 + TSS region transcription start site region 56970
Tssr56971 6 70726729 to 70726732 3 + TSS region transcription start site region 56971
Tssr61324 6 70726752 to 70726815 63 - TSS region transcription start site region 61324
Tssr56972 6 70726755 to 70726791 36 + TSS region transcription start site region 56972
Tssr56973 6 70726793 to 70726802 9 + TSS region transcription start site region 56973
Tssr61325 6 70726818 to 70726848 30 - TSS region transcription start site region 61325
Tssr56974 6 70726825 to 70726832 7 + TSS region transcription start site region 56974
Tssr1880 6 70726850 to 70726851 1 + TSS region transcription start site region 1880
Tssr61326 6 70726853 to 70726861 8 - TSS region transcription start site region 61326
Tssr56975 6 70726858 to 70726869 11 + TSS region transcription start site region 56975
Tssr61327 6 70726867 to 70726887 20 - TSS region transcription start site region 61327
Tssr61328 6 70726958 to 70726965 7 - TSS region transcription start site region 61328
Gm30211 6 70729213 to 70750527 21314 + lincRNA gene predicted gene, 30211
Tssr61329 6 70744006 to 70744017 11 - TSS region transcription start site region 61329
D6Nds6 6 70744792 to 70744992 200 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 6
Rpia 6 70765720 to 70792175 26455 - protein coding gene ribose 5-phosphate isomerase A
Tssr61330 6 70766408 to 70766412 4 - TSS region transcription start site region 61330
Tssr61331 6 70773858 to 70773895 37 - TSS region transcription start site region 61331
Tssr61332 6 70777219 to 70777224 5 - TSS region transcription start site region 61332
Cpgi17513 6 70791474 to 70792404 930 CpG island CpG island 17513
Tssr61333 6 70791997 to 70792017 20 - TSS region transcription start site region 61333
Tssr61334 6 70792020 to 70792030 10 - TSS region transcription start site region 61334
Tssr61335 6 70792036 to 70792049 13 - TSS region transcription start site region 61335
Tssr61336 6 70792155 to 70792199 44 - TSS region transcription start site region 61336
Gm30331 6 70806991 to 70814791 7800 - lncRNA gene predicted gene, 30331
Cpgi17514 6 70824609 to 70824904 295 CpG island CpG island 17514
Tssr56976 6 70824695 to 70824744 49 + TSS region transcription start site region 56976
Cpgi17515 6 70844144 to 70845317 1173 CpG island CpG island 17515
Tssr56977 6 70844499 to 70844579 80 + TSS region transcription start site region 56977
Eif2ak3 6 70844515 to 70905245 60730 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 3
Tssr56978 6 70844583 to 70844594 11 + TSS region transcription start site region 56978
Tssr56979 6 70849462 to 70849464 2 + TSS region transcription start site region 56979
Gm23346 6 70855444 to 70855579 135 + snoRNA gene predicted gene, 23346
Gm43292 6 70883354 to 70885802 2448 - unclassified gene predicted gene 43292
Tssr56980 6 70903708 to 70903715 7 + TSS region transcription start site region 56980
Tex37 6 70913087 to 70918927 5840 - protein coding gene testis expressed 37
Tssr61337 6 70918902 to 70918908 6 - TSS region transcription start site region 61337
Tssr61338 6 70918915 to 70918935 20 - TSS region transcription start site region 61338
Tssr61339 6 70951294 to 70951302 8 - TSS region transcription start site region 61339
Cpgi17516 6 70956179 to 70957401 1222 CpG island CpG island 17516
Tssr56981 6 70956456 to 70956460 4 + TSS region transcription start site region 56981
Foxi3 6 70956606 to 70961066 4460 + protein coding gene forkhead box I3
Tssr56982 6 70965917 to 70965941 24 + TSS region transcription start site region 56982
Tssr56983 6 70968802 to 70968804 2 + TSS region transcription start site region 56983
Cpgi17517 6 71012733 to 71013487 754 CpG island CpG island 17517
Gm23485 6 71039579 to 71039733 154 - snRNA gene predicted gene, 23485
Cpgi17518 6 71048517 to 71048820 303 CpG island CpG island 17518
Cpgi17519 6 71048988 to 71049152 164 CpG island CpG island 17519
Gm38826 6 71087777 to 71106633 18856 - lncRNA gene predicted gene, 38826
Gm43906 6 71105606 to 71106511 905 - unclassified gene predicted gene, 43906
D6Mit17 6 71119218 to 71119467 249 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 17