Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:69409350-70349819

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igkv13-61-1 6 69409499 to 69409875 376 + pseudogenic gene segment immunoglobulin kappa chain variable 13-61-1
Igkv4-61 6 69416893 to 69417425 532 - gene segment immunoglobulin kappa chain variable 4-61
Tssr61283 6 69417441 to 69417456 15 - TSS region transcription start site region 61283
Igkv4-59 6 69438218 to 69438741 523 - gene segment immunoglobulin kappa variable 4-59
Igkv4-60 6 69463288 to 69463725 437 - gene segment immunoglobulin kappa variable 4-60
Igkv4-58 6 69500254 to 69500758 504 - gene segment immunoglobulin kappa variable 4-58
Tssr61284 6 69500815 to 69500841 26 - TSS region transcription start site region 61284
Tssr56933 6 69516339 to 69516341 2 + TSS region transcription start site region 56933
Rn7s6 6 69516339 to 69516629 290 + SRP RNA gene 7S RNA 6
Gm47304 6 69516481 to 69516550 69 + miRNA gene predicted gene, 47304
Igkv13-57-2 6 69523739 to 69524016 277 + pseudogenic gene segment immunoglobulin kappa variable 13-57-2
Igkv4-57-1 6 69544368 to 69544892 524 - gene segment immunoglobulin kappa variable 4-57-1
Tssr61285 6 69544940 to 69544945 5 - TSS region transcription start site region 61285
Igkv13-57-1 6 69569737 to 69570109 372 + pseudogenic gene segment immunoglobulin kappa chain variable 13-57-1
Igkv4-57 6 69575975 to 69576500 525 - gene segment immunoglobulin kappa variable 4-57
Tssr61286 6 69576515 to 69576522 7 - TSS region transcription start site region 61286
Igkv13-56-1 6 69581244 to 69581452 208 + pseudogenic gene segment immunoglobulin kappa chain variable 13-56-1
Igkv4-56 6 69587295 to 69587810 515 - pseudogenic gene segment immunoglobulin kappa chain variable 4-56
Tssr1876 6 69587838 to 69587867 29 - TSS region transcription start site region 1876
Igkv13-55-1 6 69599886 to 69600262 376 + pseudogenic gene segment immunoglobulin kappa chain variable 13-55-1
Igkv4-55 6 69607275 to 69607801 526 - gene segment immunoglobulin kappa variable 4-55
Tssr61287 6 69607432 to 69607443 11 - TSS region transcription start site region 61287
Tssr61288 6 69607831 to 69607856 25 - TSS region transcription start site region 61288
Igkv13-54-1 6 69617048 to 69617423 375 + pseudogenic gene segment immunoglobulin kappa chain variable 13-54-1
Igkv4-54 6 69631648 to 69632178 530 - gene segment immunoglobulin kappa chain variable 4-54
Tssr1877 6 69632195 to 69632232 37 - TSS region transcription start site region 1877
Igkv4-53 6 69648824 to 69649354 530 - gene segment immunoglobulin kappa variable 4-53
Tssr61289 6 69649356 to 69649387 31 - TSS region transcription start site region 61289
Gm42606 6 69661094 to 69661468 374 + pseudogenic gene segment predicted gene 42606
Igkv4-51 6 69681406 to 69681939 533 - gene segment immunoglobulin kappa chain variable 4-51
Gm42958 6 69693295 to 69693612 317 + pseudogenic gene segment predicted gene 42958
Igkv4-50 6 69700767 to 69701287 520 - gene segment immunoglobulin kappa variable 4-50
Tssr61290 6 69701331 to 69701344 13 - TSS region transcription start site region 61290
Igkv12-49 6 69716562 to 69716956 394 - pseudogenic gene segment immunoglobulin kappa chain variable 12-49
Igkv5-48 6 69726573 to 69727125 552 - gene segment immunoglobulin kappa variable 5-48
Tssr61291 6 69727148 to 69727163 15 - TSS region transcription start site region 61291
Tssr61292 6 69727180 to 69727184 4 - TSS region transcription start site region 61292
Igkv12-47 6 69750854 to 69751310 456 - pseudogenic gene segment immunoglobulin kappa variable 12-47
Tssr61293 6 69751334 to 69751348 14 - TSS region transcription start site region 61293
Igkv12-46 6 69764523 to 69764992 469 - gene segment immunoglobulin kappa variable 12-46
Tssr61294 6 69764663 to 69764689 26 - TSS region transcription start site region 61294
Tssr61295 6 69765009 to 69765051 42 - TSS region transcription start site region 61295
Igkv5-45 6 69775750 to 69776306 556 - gene segment immunoglobulin kappa chain variable 5-45
Tssr61296 6 69776333 to 69776342 9 - TSS region transcription start site region 61296
Igkv12-44 6 69814631 to 69815100 469 - gene segment immunoglobulin kappa variable 12-44
Tssr61297 6 69815123 to 69815143 20 - TSS region transcription start site region 61297
Igkv5-43 6 69823355 to 69823911 556 - gene segment immunoglobulin kappa chain variable 5-43
Tssr61298 6 69823939 to 69823971 32 - TSS region transcription start site region 61298
Igkv12-42 6 69834792 to 69835241 449 - pseudogenic gene segment immunoglobulin kappa chain variable 12-42
Tssr61299 6 69835269 to 69835274 5 - TSS region transcription start site region 61299
Igkv12-41 6 69858420 to 69858884 464 - gene segment immunoglobulin kappa chain variable 12-41
Tssr61300 6 69858902 to 69858932 30 - TSS region transcription start site region 61300
Igkv5-40-1 6 69868627 to 69869193 566 - pseudogenic gene segment immunoglobulin kappa chain variable 5-40-1
Tssr1878 6 69869221 to 69869225 4 - TSS region transcription start site region 1878
Igkv12-40 6 69879350 to 69879819 469 - pseudogenic gene segment immunoglobulin kappa chain variable 12-40
Igkv5-39 6 69900424 to 69900977 553 - gene segment immunoglobulin kappa variable 5-39
Tssr61301 6 69900658 to 69900665 7 - TSS region transcription start site region 61301
Tssr61302 6 69901000 to 69901017 17 - TSS region transcription start site region 61302
Tssr61303 6 69901122 to 69901132 10 - TSS region transcription start site region 61303
Gm43220 6 69927621 to 69927902 281 - pseudogenic gene segment predicted gene 43220
Igkv12-38 6 69943186 to 69943648 462 - gene segment immunoglobulin kappa chain variable 12-38
Tssr61304 6 69943688 to 69943700 12 - TSS region transcription start site region 61304
Igkv5-37 6 69963312 to 69963861 549 - gene segment immunoglobulin kappa variable 5-37
Tssr61305 6 69963881 to 69963897 16 - TSS region transcription start site region 61305
Igkv18-36 6 69992465 to 69992977 512 - gene segment immunoglobulin kappa chain variable 18-36
Tssr61306 6 69992993 to 69993009 16 - TSS region transcription start site region 61306
Igkv1-35 6 70010949 to 70011673 724 - gene segment immunoglobulin kappa variable 1-35
Gm23694 6 70027982 to 70028091 109 - miRNA gene predicted gene, 23694
Tssr1879 6 70031683 to 70031688 5 - TSS region transcription start site region 1879
Gm43586 6 70040338 to 70040647 309 - pseudogenic gene segment predicted gene 43586
Igkv8-34 6 70044112 to 70044678 566 - gene segment immunoglobulin kappa variable 8-34
Igkv7-33 6 70058632 to 70059199 567 - gene segment immunoglobulin kappa chain variable 7-33
Tssr61307 6 70059231 to 70059236 5 - TSS region transcription start site region 61307
Igkv6-32 6 70074024 to 70074584 560 - gene segment immunoglobulin kappa variable 6-32
Tssr61308 6 70074602 to 70074621 19 - TSS region transcription start site region 61308
D6Mit96 6 70075269 to 70075371 102 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 96
Igkv8-31 6 70105860 to 70106179 319 - pseudogenic gene segment immunoglobulin kappa chain variable 8-31
Igkv8-30 6 70117061 to 70117617 556 - gene segment immunoglobulin kappa chain variable 8-30
Tssr61309 6 70117631 to 70117657 26 - TSS region transcription start site region 61309
Gm42818 6 70129652 to 70130638 986 + pseudogene predicted gene 42818
Amd-ps2 6 70130676 to 70132505 1829 + pseudogene S-adenosylmethionine decarboxylase, pseudogene 2
Igkv6-29 6 70138462 to 70139082 620 - gene segment immunoglobulin kappa chain variable 6-29
Igkv8-28 6 70143593 to 70144161 568 - gene segment immunoglobulin kappa variable 8-28
Gm24096 6 70147936 to 70148045 109 - miRNA gene predicted gene, 24096
Igkv8-27 6 70171809 to 70172270 461 - gene segment immunoglobulin kappa chain variable 8-27
Tssr61310 6 70172289 to 70172306 17 - TSS region transcription start site region 61310
Igkv8-26 6 70193228 to 70193797 569 + gene segment immunoglobulin kappa variable 8-26
Gm8828 6 70209552 to 70213767 4215 - pseudogene predicted gene 8828
Tssr56934 6 70215401 to 70215404 3 + TSS region transcription start site region 56934
Igkv6-25 6 70215433 to 70215957 524 + gene segment immunoglobulin kappa chain variable 6-25
Igkv8-24 6 70216858 to 70217421 563 - gene segment immunoglobulin kappa chain variable 8-24
Tssr61311 6 70217449 to 70217452 3 - TSS region transcription start site region 61311
Gm46962 6 70218846 to 70220704 1858 - lncRNA gene predicted gene, 46962
Igkv8-23-1 6 70240427 to 70240710 283 + gene segment immunoglobulin kappa variable 8-23-1
Gm43218 6 70240427 to 70240972 545 - gene segment predicted gene 43218
Igkv6-23 6 70260409 to 70260933 524 - gene segment immunoglobulin kappa variable 6-23
Tssr61312 6 70260959 to 70260964 5 - TSS region transcription start site region 61312
Gm8836 6 70262565 to 70263912 1347 + pseudogene predicted gene 8836
Gm11065 6 70295177 to 70295406 229 + pseudogene predicted gene 11065
Igkv8-22 6 70297554 to 70298119 565 - pseudogenic gene segment immunoglobulin kappa chain variable 8-22
Igkv8-21 6 70314895 to 70315452 557 - gene segment immunoglobulin kappa variable 8-21
Tssr61313 6 70315467 to 70315473 6 - TSS region transcription start site region 61313
Amd-ps5 6 70327036 to 70328024 988 + pseudogene S-adenosylmethionine decarboxylase, pseudogene 5
Igkv6-20 6 70335841 to 70336479 638 - gene segment immunoglobulin kappa variable 6-20
Igkv8-19 6 70340876 to 70341448 572 - gene segment immunoglobulin kappa variable 8-19