Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:68560178-69200674

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr56929 6 68570733 to 68570739 6 + TSS region transcription start site region 56929
Igkv12-98 6 68570763 to 68571235 472 + gene segment immunoglobulin kappa variable 12-98
Igkv15-97 6 68591380 to 68591832 452 + pseudogenic gene segment immunoglobulin kappa chain variable 15-97
Igkv10-96 6 68631965 to 68632430 465 - gene segment immunoglobulin kappa variable 10-96
Igkv2-95-2 6 68647999 to 68648531 532 - pseudogenic gene segment immunoglobulin kappa variable 2-95-2
Igkv2-95-1 6 68670752 to 68671335 583 + pseudogenic gene segment immunoglobulin kappa chain variable
Tssr56930 6 68680347 to 68680354 7 + TSS region transcription start site region 56930
Igkv10-95 6 68680379 to 68680848 469 + gene segment immunoglobulin kappa variable 10-95
Igkv10-94 6 68704508 to 68704978 470 - gene segment immunoglobulin kappa variable 10-94
Igkv2-93-1 6 68712925 to 68713508 583 - pseudogenic gene segment immunoglobulin kappa chain variable 2-93-1
Gm40414 6 68734181 to 68734661 480 - pseudogene predicted gene, 40414
Igkv19-93 6 68736297 to 68736764 467 - gene segment immunoglobulin kappa chain variable 19-93
Tssr61262 6 68736784 to 68736800 16 - TSS region transcription start site region 61262
Igkv4-92 6 68755038 to 68755593 555 - gene segment immunoglobulin kappa variable 4-92
Tssr61263 6 68755631 to 68755636 5 - TSS region transcription start site region 61263
Gm42925 6 68763282 to 68763692 410 - pseudogenic gene segment predicted gene 42925
Igkv4-91 6 68768555 to 68769103 548 - gene segment immunoglobulin kappa chain variable 4-91
Tssr61264 6 68768590 to 68768605 15 - TSS region transcription start site region 61264
Tssr61265 6 68769115 to 68769141 26 - TSS region transcription start site region 61265
Tssr61266 6 68769146 to 68769159 13 - TSS region transcription start site region 61266
4930549O18Rik 6 68799076 to 68802460 3384 unclassified gene RIKEN cDNA 4930549O18 gene
Igkv4-90 6 68807180 to 68807708 528 - gene segment immunoglobulin kappa chain variable 4-90
Tssr61267 6 68807738 to 68807759 21 - TSS region transcription start site region 61267
Igkv13-89-1 6 68810495 to 68810543 48 + pseudogenic gene segment immunoglobulin kappa chain variable 13-89-1
Gm42924 6 68810669 to 68810853 184 + pseudogenic gene segment predicted gene 42924
Igkv12-89 6 68834846 to 68835307 461 - gene segment immunoglobulin kappa chain variable 12-89
Tssr61268 6 68835330 to 68835336 6 - TSS region transcription start site region 61268
Igkv1-88 6 68862265 to 68863031 766 - gene segment immunoglobulin kappa chain variable 1-88
Tssr61269 6 68863041 to 68863048 7 - TSS region transcription start site region 61269
Gm42539 6 68875428 to 68875823 395 - pseudogenic gene segment predicted gene 42539
Gm42543 6 68880178 to 68880674 496 - gene segment predicted gene 42543
Tssr61270 6 68880693 to 68880713 20 - TSS region transcription start site region 61270
Gm42542 6 68893580 to 68893982 402 - pseudogenic gene segment predicted gene 42542
Igkv13-87 6 68902981 to 68903266 285 + pseudogenic gene segment immunoglobulin kappa variable 13-87
Gm43710 6 68909406 to 68909857 451 + pseudogene predicted gene 43710
Igkv4-86 6 68910411 to 68910938 527 - gene segment immunoglobulin kappa variable 4-86
Tssr61271 6 68910443 to 68910457 14 - TSS region transcription start site region 61271
Tssr61272 6 68910948 to 68910962 14 - TSS region transcription start site region 61272
Tssr61273 6 68910980 to 68910998 18 - TSS region transcription start site region 61273
Igkv13-85 6 68930269 to 68930734 465 - gene segment immunoglobulin kappa chain variable 13-85
Tssr61274 6 68930757 to 68930781 24 - TSS region transcription start site region 61274
Tssr56931 6 68939556 to 68939585 29 + TSS region transcription start site region 56931
Igkv13-84 6 68939602 to 68940067 465 + gene segment immunoglobulin kappa chain variable 13-84
Igkv4-83 6 68961378 to 68962007 629 - pseudogenic gene segment immunoglobulin kappa chain variable 4-83
Igkv13-82 6 68979198 to 68979663 465 + pseudogenic gene segment immunoglobulin kappa chain variable 13-82
Tssr56932 6 68980360 to 68980370 10 + TSS region transcription start site region 56932
Tssr61275 6 68980952 to 68980956 4 - TSS region transcription start site region 61275
Igkv4-81 6 68990758 to 68991294 536 - gene segment immunoglobulin kappa variable 4-81
Tssr61276 6 68991323 to 68991347 24 - TSS region transcription start site region 61276
Igkv13-80-1 6 69009143 to 69009513 370 + pseudogenic gene segment immunoglobulin kappa chain variable 13-80-1
Igkv4-80 6 69016558 to 69017080 522 - gene segment immunoglobulin kappa variable 4-80
Tssr61277 6 69017128 to 69017135 7 - TSS region transcription start site region 61277
Igkv4-79 6 69042972 to 69043505 533 - gene segment immunoglobulin kappa variable 4-79
Tssr61278 6 69043534 to 69043556 22 - TSS region transcription start site region 61278
Igkv13-78-1 6 69051617 to 69051816 199 + pseudogenic gene segment immunoglobulin kappa variable 13-78-1
Igkv4-78 6 69059690 to 69060224 534 - gene segment immunoglobulin kappa variable 4-78
Gm43583 6 69086185 to 69086487 302 + pseudogenic gene segment predicted gene 43583
Igkv4-77 6 69110904 to 69111432 528 - pseudogenic gene segment immunoglobulin kappa variable 4-77
Igkv13-76 6 69137866 to 69138332 466 + pseudogenic gene segment immunoglobulin kappa chain variable 13-76
Igkv4-75 6 69156118 to 69156659 541 - pseudogenic gene segment immunoglobulin kappa chain variable 4-75
Igkv13-74-1 6 69177423 to 69177787 364 + pseudogenic gene segment immunoglobulin kappa chain variable 13-74-1
Igkv4-74 6 69184826 to 69185361 535 - gene segment immunoglobulin kappa variable 4-74
Tssr61279 6 69185408 to 69185416 8 - TSS region transcription start site region 61279
Igkv13-73-1 6 69190083 to 69190282 199 + pseudogenic gene segment immunoglobulin kappa chain variable 13-73-1
Igkv4-73 6 69197583 to 69198116 533 - gene segment immunoglobulin kappa variable 4-73
Tssr61280 6 69198145 to 69198165 20 - TSS region transcription start site region 61280