Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:68002762-68593489

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr56914 6 68016707 to 68016714 7 + TSS region transcription start site region 56914
Igkv1-122 6 68016742 to 68017488 746 + gene segment immunoglobulin kappa chain variable 1-122
Tssr56915 6 68036788 to 68036813 25 + TSS region transcription start site region 56915
Igkv17-121 6 68036818 to 68037318 500 + gene segment immunoglobulin kappa variable 17-121
Tssr56916 6 68049957 to 68049964 7 + TSS region transcription start site region 56916
Igkv9-120 6 68049983 to 68050454 471 + gene segment immunoglobulin kappa chain variable 9-120
Igkv9-119 6 68056345 to 68056810 465 + pseudogenic gene segment immunoglobulin kappa chain variable 9-119
Igkv14-118-2 6 68066369 to 68066828 459 + pseudogenic gene segment immunoglobulin kappa chain variable 14-118-2
Igkv14-118-1 6 68082675 to 68083121 446 + pseudogenic gene segment immunoglobulin kappa chain variable 14-118-1
Gm43739 6 68100569 to 68100972 403 + pseudogenic gene segment predicted gene 43739
Gm5309 6 68103089 to 68103433 344 - pseudogene predicted gene 5309
Igkv11-118 6 68105414 to 68105880 466 + pseudogenic gene segment immunoglobulin kappa chain variable 11-118
Igkv1-117 6 68121091 to 68121825 734 + gene segment immunoglobulin kappa variable 1-117
Gm43171 6 68146402 to 68146692 290 - pseudogene predicted gene 43171
Gm43170 6 68147120 to 68147847 727 + pseudogene predicted gene 43170
Is(In8B2-8B3.1;6C1)1Tshir 6 68148517 to 74207573 6059056 cytogenetic marker Insertion, Chr8 B2-B3.1 into Chr 6C1, Toshihiko Shiroishi 1
D6Mit279 6 68148517 to 68148628 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 279
Tssr56917 6 68151854 to 68151856 2 + TSS region transcription start site region 56917
Igkv2-116 6 68151885 to 68152617 732 + pseudogenic gene segment immunoglobulin kappa variable 2-116
Igkv1-115 6 68161415 to 68161716 301 + pseudogenic gene segment immunoglobulin kappa variable 1-115
Igkv11-114 6 68164459 to 68164923 464 + pseudogenic gene segment immunoglobulin kappa chain variable
Igkv2-113 6 68178801 to 68179564 763 + pseudogenic gene segment immunoglobulin kappa chain variable 2-113
Skts11 6 68179150 to 68179300 150 QTL skin tumor susceptibility 11
D6Mit97 6 68179150 to 68179300 150 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 97
Gm4873 6 68214051 to 68215253 1202 - pseudogene predicted gene 4873
Tssr56918 6 68219936 to 68219943 7 + TSS region transcription start site region 56918
Tssr56919 6 68219944 to 68219957 13 + TSS region transcription start site region 56919
Igkv2-112 6 68219981 to 68220705 724 + gene segment immunoglobulin kappa variable 2-112
Tssr56920 6 68256376 to 68256384 8 + TSS region transcription start site region 56920
Igkv14-111 6 68256404 to 68256869 465 + gene segment immunoglobulin kappa variable 14-111
Gm25436 6 68257394 to 68257538 144 - snoRNA gene predicted gene, 25436
Igkv1-110 6 68270527 to 68271265 738 + gene segment immunoglobulin kappa variable 1-110
Tssr56921 6 68282319 to 68282328 9 + TSS region transcription start site region 56921
Gm43007 6 68297002 to 68297292 290 - pseudogene predicted gene 43007
Gm42612 6 68297762 to 68298489 727 + pseudogene predicted gene 42612
Tssr56922 6 68302408 to 68302410 2 + TSS region transcription start site region 56922
Igkv2-109 6 68302439 to 68303158 719 + gene segment immunoglobulin kappa variable 2-109
Igkv1-108 6 68312062 to 68312359 297 + pseudogenic gene segment immunoglobulin kappa variable 1-108
Igkv2-107 6 68326098 to 68326752 654 + pseudogenic gene segment immunoglobulin kappa variable 2-107
Igkv11-106 6 68339527 to 68339995 468 + pseudogenic gene segment immunoglobulin kappa variable 11-106
Igkv2-105 6 68348661 to 68349441 780 + pseudogenic gene segment immunoglobulin kappa chain variable 2-105
Gm5310 6 68387561 to 68389071 1510 - pseudogene predicted gene 5310
D6Dcr15 6 68390833 to 68390934 101 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 15
Tssr56923 6 68425567 to 68425584 17 + TSS region transcription start site region 56923
Igkv16-104 6 68425605 to 68426072 467 + gene segment immunoglobulin kappa variable 16-104
Tssr56924 6 68437417 to 68437452 35 + TSS region transcription start site region 56924
Igkv15-103 6 68437468 to 68437925 457 + gene segment immunoglobulin kappa chain variable 15-103
Tssr56925 6 68437876 to 68437892 16 + TSS region transcription start site region 56925
D6Dcr16 6 68458847 to 68458945 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 16
Igkv15-102 6 68466126 to 68466412 286 - pseudogenic gene segment immunoglobulin kappa chain variable 15-102
Tssr56926 6 68474579 to 68474585 6 + TSS region transcription start site region 56926
Igkv20-101-2 6 68474888 to 68475098 210 + gene segment immunoglobulin kappa chain variable 20-101-2
Igkv15-101-1 6 68479316 to 68479573 257 + pseudogenic gene segment immunoglobulin kappa chain variable 15-101-1
Igkv15-101 6 68481421 to 68481718 297 - pseudogenic gene segment immunoglobulin kappa chain variable 15-101
Tssr1874 6 68512417 to 68512420 3 + TSS region transcription start site region 1874
Tssr56927 6 68518981 to 68518997 16 + TSS region transcription start site region 56927
Igkv14-100 6 68519012 to 68519477 465 + gene segment immunoglobulin kappa chain variable 14-100
Gm25833 6 68532744 to 68532876 132 + snoRNA gene predicted gene, 25833
Tssr56928 6 68541619 to 68541632 13 + TSS region transcription start site region 56928
Igkv1-99 6 68541658 to 68542422 764 + gene segment immunoglobulin kappa variable 1-99
Tssr56929 6 68570733 to 68570739 6 + TSS region transcription start site region 56929
Igkv12-98 6 68570763 to 68571235 472 + gene segment immunoglobulin kappa variable 12-98
Igkv15-97 6 68591380 to 68591832 452 + pseudogenic gene segment immunoglobulin kappa chain variable 15-97