Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:67443346-68323610

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il23r 6 67422932 to 67491855 68923 - protein coding gene interleukin 23 receptor
Tssr61253 6 67491849 to 67491862 13 - TSS region transcription start site region 61253
Gm42889 6 67532489 to 67556204 23715 + lincRNA gene predicted gene 42889
Tssr1867 6 67532533 to 67532541 8 - TSS region transcription start site region 1867
Tssr1868 6 67532566 to 67532577 11 - TSS region transcription start site region 1868
Cpgi17511 6 67532881 to 67533408 527 CpG island CpG island 17511
Tssr1869 6 67533305 to 67533338 33 - TSS region transcription start site region 1869
Tssr1870 6 67533437 to 67533469 32 + TSS region transcription start site region 1870
Tssr61254 6 67533659 to 67533663 4 - TSS region transcription start site region 61254
Tssr1871 6 67533801 to 67533818 17 + TSS region transcription start site region 1871
Tacstd2 6 67534062 to 67535796 1734 - protein coding gene tumor-associated calcium signal transducer 2
Cpgi17512 6 67534650 to 67535876 1226 CpG island CpG island 17512
Tssr61255 6 67534730 to 67534745 15 - TSS region transcription start site region 61255
Tssr1872 6 67534772 to 67534781 9 - TSS region transcription start site region 1872
Tssr61256 6 67535194 to 67535226 32 - TSS region transcription start site region 61256
Tssr61257 6 67535685 to 67535697 12 - TSS region transcription start site region 61257
Tssr61258 6 67535783 to 67535802 19 - TSS region transcription start site region 61258
Tssr61259 6 67535828 to 67535870 42 - TSS region transcription start site region 61259
Tssr56904 6 67555579 to 67555595 16 + TSS region transcription start site region 56904
Tssr56905 6 67555597 to 67555612 15 + TSS region transcription start site region 56905
Tssr56906 6 67555630 to 67555635 5 + TSS region transcription start site region 56906
Igkv2-137 6 67555636 to 67556216 580 + gene segment immunoglobulin kappa chain variable 2-137
Igk 6 67555636 to 70726754 3171118 + complex/cluster/region immunoglobulin kappa chain complex
4930515G16Rik 6 67565234 to 67565699 465 - pseudogene RIKEN cDNA 4930515G16 gene
Igkv1-136 6 67594012 to 67594308 296 + pseudogenic gene segment immunoglobulin kappa chain variable 1-136
Tssr56907 6 67609711 to 67609717 6 + TSS region transcription start site region 56907
Igkv1-135 6 67609745 to 67610508 763 + gene segment immunoglobulin kappa variable 1-135
Gm9728 6 67633089 to 67634143 1054 - pseudogene predicted gene 9728
Rpl18a-ps2 6 67641530 to 67641703 173 - pseudogene ribosomal protein L18A, pseudogene 2
Igkv14-134-1 6 67711174 to 67711628 454 - pseudogenic gene segment immunoglobulin kappa chain variable 14-134-1
Gm38573 6 67717742 to 67721436 3694 - lncRNA gene predicted gene, 38573
Igkv17-134 6 67720729 to 67721225 496 - pseudogenic gene segment immunoglobulin kappa chain variable 17-134
Tssr56908 6 67724880 to 67724886 6 + TSS region transcription start site region 56908
Igkv1-133 6 67724914 to 67725661 747 + gene segment immunoglobulin kappa variable 1-133
Gm5308 6 67734251 to 67735604 1353 - pseudogene predicted gene 5308
Rpl18a-ps3 6 67748560 to 67748730 170 - pseudogene ribosomal protein L18A, pseudogene 3
Gm43284 6 67754746 to 67754998 252 + pseudogenic gene segment predicted gene 43284
Tssr56909 6 67759666 to 67759672 6 + TSS region transcription start site region 56909
Igkv1-132 6 67759700 to 67760413 713 + gene segment immunoglobulin kappa variable 1-132
Igkv1-131 6 67766036 to 67766772 736 - gene segment immunoglobulin kappa variable 1-131
Gm18980 6 67778250 to 67779328 1078 - pseudogene predicted gene, 18980
Tssr56910 6 67791023 to 67791027 4 + TSS region transcription start site region 56910
Igkv14-130 6 67791046 to 67791511 465 + gene segment immunoglobulin kappa variable 14-130
Gm22425 6 67792439 to 67792576 137 - snoRNA gene predicted gene, 22425
Gm24911 6 67804375 to 67804510 135 - snoRNA gene predicted gene, 24911
Igkv9-129 6 67839793 to 67840266 473 + gene segment immunoglobulin kappa variable 9-129
Igkv9-128 6 67847409 to 67847874 465 + pseudogenic gene segment immunoglobulin kappa chain variable 9-128
Tssr56911 6 67861130 to 67861139 9 + TSS region transcription start site region 56911
Igkv17-127 6 67861159 to 67861659 500 + gene segment immunoglobulin kappa variable 17-127
Tssr1873 6 67875984 to 67875986 2 + TSS region transcription start site region 1873
Igkv14-126-1 6 67876011 to 67876477 466 + pseudogenic gene segment immunoglobulin kappa chain variable 14-126-1
Gm9729 6 67883346 to 67883610 264 - pseudogene predicted gene 9729
Tssr56912 6 67896151 to 67896152 1 + TSS region transcription start site region 56912
Igkv14-126 6 67896177 to 67896642 465 + pseudogenic gene segment immunoglobulin kappa variable 14-126
Gm25910 6 67897065 to 67897204 139 - snoRNA gene predicted gene, 25910
Tssr56913 6 67913550 to 67913557 7 + TSS region transcription start site region 56913
Igkv11-125 6 67913573 to 67914052 479 + gene segment immunoglobulin kappa variable 11-125
Igkv9-124 6 67942076 to 67942540 464 - gene segment immunoglobulin kappa chain variable 9-124
Tssr61260 6 67942549 to 67942565 16 - TSS region transcription start site region 61260
Igkv9-123 6 67954230 to 67954690 460 - gene segment immunoglobulin kappa variable 9-123
Tssr61261 6 67954708 to 67954716 8 - TSS region transcription start site region 61261
Tssr56914 6 68016707 to 68016714 7 + TSS region transcription start site region 56914
Igkv1-122 6 68016742 to 68017488 746 + gene segment immunoglobulin kappa chain variable 1-122
Tssr56915 6 68036788 to 68036813 25 + TSS region transcription start site region 56915
Igkv17-121 6 68036818 to 68037318 500 + gene segment immunoglobulin kappa variable 17-121
Tssr56916 6 68049957 to 68049964 7 + TSS region transcription start site region 56916
Igkv9-120 6 68049983 to 68050454 471 + gene segment immunoglobulin kappa chain variable 9-120
Igkv9-119 6 68056345 to 68056810 465 + pseudogenic gene segment immunoglobulin kappa chain variable 9-119
Igkv14-118-2 6 68066369 to 68066828 459 + pseudogenic gene segment immunoglobulin kappa chain variable 14-118-2
Igkv14-118-1 6 68082675 to 68083121 446 + pseudogenic gene segment immunoglobulin kappa chain variable 14-118-1
Gm43739 6 68100569 to 68100972 403 + pseudogenic gene segment predicted gene 43739
Gm5309 6 68103089 to 68103433 344 - pseudogene predicted gene 5309
Igkv11-118 6 68105414 to 68105880 466 + pseudogenic gene segment immunoglobulin kappa chain variable 11-118
Igkv1-117 6 68121091 to 68121825 734 + gene segment immunoglobulin kappa variable 1-117
Gm43171 6 68146402 to 68146692 290 - pseudogene predicted gene 43171
Gm43170 6 68147120 to 68147847 727 + pseudogene predicted gene 43170
D6Mit279 6 68148517 to 68148628 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 279
Is(In8B2-8B3.1;6C1)1Tshir 6 68148517 to 74207573 6059056 cytogenetic marker Insertion, Chr8 B2-B3.1 into Chr 6C1, Toshihiko Shiroishi 1
Tssr56917 6 68151854 to 68151856 2 + TSS region transcription start site region 56917
Igkv2-116 6 68151885 to 68152617 732 + pseudogenic gene segment immunoglobulin kappa variable 2-116
Igkv1-115 6 68161415 to 68161716 301 + pseudogenic gene segment immunoglobulin kappa variable 1-115
Igkv11-114 6 68164459 to 68164923 464 + pseudogenic gene segment immunoglobulin kappa chain variable
Igkv2-113 6 68178801 to 68179564 763 + pseudogenic gene segment immunoglobulin kappa chain variable 2-113
Skts11 6 68179150 to 68179300 150 QTL skin tumor susceptibility 11
D6Mit97 6 68179150 to 68179300 150 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 97
Gm4873 6 68214051 to 68215253 1202 - pseudogene predicted gene 4873
Tssr56918 6 68219936 to 68219943 7 + TSS region transcription start site region 56918
Tssr56919 6 68219944 to 68219957 13 + TSS region transcription start site region 56919
Igkv2-112 6 68219981 to 68220705 724 + gene segment immunoglobulin kappa variable 2-112
Tssr56920 6 68256376 to 68256384 8 + TSS region transcription start site region 56920
Igkv14-111 6 68256404 to 68256869 465 + gene segment immunoglobulin kappa variable 14-111
Gm25436 6 68257394 to 68257538 144 - snoRNA gene predicted gene, 25436
Igkv1-110 6 68270527 to 68271265 738 + gene segment immunoglobulin kappa variable 1-110
Tssr56921 6 68282319 to 68282328 9 + TSS region transcription start site region 56921
Gm43007 6 68297002 to 68297292 290 - pseudogene predicted gene 43007
Gm42612 6 68297762 to 68298489 727 + pseudogene predicted gene 42612
Tssr56922 6 68302408 to 68302410 2 + TSS region transcription start site region 56922
Igkv2-109 6 68302439 to 68303158 719 + gene segment immunoglobulin kappa variable 2-109
Igkv1-108 6 68312062 to 68312359 297 + pseudogenic gene segment immunoglobulin kappa variable 1-108