Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:66480321-67270743

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tpm3-rs3 6 66515891 to 66517730 1839 - pseudogene tropomyosin 3, related sequence 3
Gm19764 6 66515893 to 66516541 648 + pseudogene predicted gene, 19764
Gm6786 6 66527014 to 66528926 1912 + pseudogene predicted gene 6786
Cpgi17504 6 66534971 to 66535869 898 CpG island CpG island 17504
Mad2l1 6 66535226 to 66541109 5883 + protein coding gene MAD2 mitotic arrest deficient-like 1
Tssr56862 6 66535392 to 66535412 20 + TSS region transcription start site region 56862
Tssr56863 6 66535418 to 66535482 64 + TSS region transcription start site region 56863
Tssr56864 6 66537533 to 66537544 11 + TSS region transcription start site region 56864
Vmn1r32 6 66552183 to 66559708 7525 - protein coding gene vomeronasal 1 receptor 32
Gm5307 6 66577210 to 66577969 759 + pseudogene predicted gene 5307
Vmn1r33 6 66611651 to 66612568 917 - protein coding gene vomeronasal 1 receptor 33
Vmn1r34 6 66636823 to 66637752 929 - protein coding gene vomeronasal 1 receptor 34
Vmn1r35 6 66678794 to 66679684 890 - protein coding gene vomeronasal 1 receptor 35
Tssr56865 6 66711645 to 66711650 5 + TSS region transcription start site region 56865
Gm6794 6 66711691 to 66712147 456 + pseudogene predicted gene 6794
Vmn1r36 6 66715972 to 66716889 917 - protein coding gene vomeronasal 1 receptor 36
Vmn1r37 6 66731392 to 66732300 908 + protein coding gene vomeronasal 1 receptor 37
Gm44261 6 66733969 to 66734177 208 - pseudogene predicted gene, 44261
Gm4045 6 66746017 to 66746326 309 + pseudogene predicted gene 4045
Vmn1r-ps24 6 66753381 to 66754279 898 - pseudogene vomeronasal 1 receptor, pseudogene 24
Vmn1r38 6 66776222 to 66777130 908 - protein coding gene vomeronasal 1 receptor 38
Vmn1r39 6 66804415 to 66805332 917 - protein coding gene vomeronasal 1 receptor 39
Gm36610 6 66840015 to 66842976 2961 - lncRNA gene predicted gene, 36610
Gm9794 6 66875321 to 66875743 422 - pseudogene predicted pseudogene 9794
Tssr61227 6 66875427 to 66875434 7 - TSS region transcription start site region 61227
Tssr61228 6 66875650 to 66875689 39 - TSS region transcription start site region 61228
Tssr61229 6 66875749 to 66875766 17 - TSS region transcription start site region 61229
4930597O21Rik 6 66894652 to 66896521 1869 - unclassified non-coding RNA gene RIKEN cDNA 4930597O21 gene
Cpgi17505 6 66896073 to 66897462 1389 CpG island CpG island 17505
Gng12 6 66896397 to 67021350 124953 + protein coding gene guanine nucleotide binding protein (G protein), gamma 12
Tssr56866 6 66896410 to 66896421 11 + TSS region transcription start site region 56866
Tssr56867 6 66896429 to 66896440 11 + TSS region transcription start site region 56867
Tssr56868 6 66896444 to 66896479 35 + TSS region transcription start site region 56868
Tssr56869 6 66896480 to 66896492 12 + TSS region transcription start site region 56869
Tssr61230 6 66896515 to 66896516 1 - TSS region transcription start site region 61230
Tssr56870 6 66912642 to 66912646 4 + TSS region transcription start site region 56870
Tssr56871 6 66918511 to 66918523 12 + TSS region transcription start site region 56871
Tssr56872 6 66935861 to 66935877 16 + TSS region transcription start site region 56872
Tssr56873 6 66957026 to 66957031 5 + TSS region transcription start site region 56873
Tssr56874 6 66963306 to 66963309 3 + TSS region transcription start site region 56874
Tssr56875 6 66970504 to 66970534 30 + TSS region transcription start site region 56875
Gm36816 6 66990031 to 67009260 19229 - antisense lncRNA gene predicted gene, 36816
Gm15644 6 67012485 to 67012871 386 + pseudogene predicted gene 15644
Tssr56876 6 67017498 to 67017522 24 + TSS region transcription start site region 56876
Tssr56877 6 67017639 to 67017652 13 + TSS region transcription start site region 56877
Tssr56878 6 67019719 to 67019734 15 + TSS region transcription start site region 56878
Tssr56879 6 67020297 to 67020334 37 + TSS region transcription start site region 56879
Gm29848 6 67022177 to 67022471 294 + pseudogene predicted gene, 29848
Gm25260 6 67027043 to 67027176 133 + snRNA gene predicted gene, 25260
Tssr61231 6 67029824 to 67029838 14 - TSS region transcription start site region 61231
Gadd45a 6 67035096 to 67037407 2311 - protein coding gene growth arrest and DNA-damage-inducible 45 alpha
Tssr61232 6 67035294 to 67035299 5 - TSS region transcription start site region 61232
Tssr1865 6 67035509 to 67035520 11 - TSS region transcription start site region 1865
Tssr61233 6 67035527 to 67035544 17 - TSS region transcription start site region 61233
Cpgi17506 6 67036453 to 67037698 1245 CpG island CpG island 17506
E230016M11Rik 6 67036599 to 67080652 44053 + lncRNA gene RIKEN cDNA E230016M11 gene
Tssr56880 6 67036640 to 67036676 36 + TSS region transcription start site region 56880
Tssr56881 6 67037199 to 67037201 2 + TSS region transcription start site region 56881
Tssr61234 6 67037207 to 67037220 13 - TSS region transcription start site region 61234
Tssr61235 6 67037378 to 67037394 16 - TSS region transcription start site region 61235
Tssr61236 6 67037399 to 67037417 18 - TSS region transcription start site region 61236
Tssr56882 6 67052952 to 67052962 10 + TSS region transcription start site region 56882
Cpgi17507 6 67088955 to 67089144 189 CpG island CpG island 17507
Gm29928 6 67091931 to 67103262 11331 + lncRNA gene predicted gene, 29928
Cpgi17508 6 67113898 to 67114224 326 CpG island CpG island 17508
Tssr56883 6 67115671 to 67115708 37 + TSS region transcription start site region 56883
Tssr56884 6 67146237 to 67146277 40 + TSS region transcription start site region 56884
A430010J10Rik 6 67157801 to 67165108 7307 + unclassified non-coding RNA gene RIKEN cDNA A430010J10 gene
Gm38825 6 67178681 to 67186716 8035 - antisense lncRNA gene predicted gene, 38825
Tssr61237 6 67186568 to 67186601 33 - TSS region transcription start site region 61237
Tssr61238 6 67186646 to 67186676 30 - TSS region transcription start site region 61238
Tssr56885 6 67205505 to 67205523 18 + TSS region transcription start site region 56885
Gm8566 6 67205619 to 67206083 464 + pseudogene predicted pseudogene 8566
Gm44052 6 67221902 to 67222544 642 - pseudogene predicted gene, 44052
Tssr56886 6 67226445 to 67226456 11 + TSS region transcription start site region 56886
Tssr56887 6 67236767 to 67236775 8 + TSS region transcription start site region 56887
Tssr61239 6 67237888 to 67237899 11 - TSS region transcription start site region 61239
Tssr61240 6 67237902 to 67237913 11 - TSS region transcription start site region 61240
Tssr56888 6 67238115 to 67238129 14 + TSS region transcription start site region 56888
Gm44050 6 67252025 to 67252928 903 - pseudogene predicted gene, 44050
Cpgi17509 6 67266223 to 67268214 1991 CpG island CpG island 17509
Serbp1 6 67266979 to 67289302 22323 + protein coding gene serpine1 mRNA binding protein 1
Tssr56889 6 67266987 to 67267021 34 + TSS region transcription start site region 56889
Tssr61241 6 67267397 to 67267425 28 - TSS region transcription start site region 61241
Tssr56890 6 67270439 to 67270443 4 + TSS region transcription start site region 56890