Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:65572014-67483926

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr56827 6 65590382 to 65590412 30 + TSS region transcription start site region 56827
Tnip3 6 65590398 to 65634040 43642 + protein coding gene TNFAIP3 interacting protein 3
Tssr56828 6 65590416 to 65590432 16 + TSS region transcription start site region 56828
Tssr56829 6 65590454 to 65590459 5 + TSS region transcription start site region 56829
Tssr56830 6 65594776 to 65594780 4 + TSS region transcription start site region 56830
Tssr56831 6 65596126 to 65596146 20 + TSS region transcription start site region 56831
Tssr56832 6 65596590 to 65596606 16 + TSS region transcription start site region 56832
Tssr56833 6 65597354 to 65597372 18 + TSS region transcription start site region 56833
Tssr56834 6 65601165 to 65601208 43 + TSS region transcription start site region 56834
Tssr56835 6 65601582 to 65601629 47 + TSS region transcription start site region 56835
Tssr56836 6 65602822 to 65602855 33 + TSS region transcription start site region 56836
Tssr56837 6 65612221 to 65612225 4 + TSS region transcription start site region 56837
Tssr56838 6 65621864 to 65621870 6 + TSS region transcription start site region 56838
Tssr56839 6 65625156 to 65625203 47 + TSS region transcription start site region 56839
Tssr56840 6 65625425 to 65625441 16 + TSS region transcription start site region 56840
Tssr56841 6 65627005 to 65627015 10 + TSS region transcription start site region 56841
Tssr56842 6 65627144 to 65627157 13 + TSS region transcription start site region 56842
Tssr56843 6 65627158 to 65627172 14 + TSS region transcription start site region 56843
Tssr56844 6 65631232 to 65631246 14 + TSS region transcription start site region 56844
Tssr56845 6 65631293 to 65631307 14 + TSS region transcription start site region 56845
Tssr56846 6 65631315 to 65631345 30 + TSS region transcription start site region 56846
Tssr56847 6 65631369 to 65631426 57 + TSS region transcription start site region 56847
Tssr56848 6 65631500 to 65631517 17 + TSS region transcription start site region 56848
Tssr56849 6 65631521 to 65631549 28 + TSS region transcription start site region 56849
Tssr56850 6 65631940 to 65631962 22 + TSS region transcription start site region 56850
D6Rck337 6 65642038 to 65642305 267 DNA segment DNA segment, Chr 6, Rockefeller University 337
Tssr56851 6 65653081 to 65653109 28 + TSS region transcription start site region 56851
Gm36144 6 65662049 to 65671247 9198 - lncRNA gene predicted gene, 36144
Cpgi17502 6 65671010 to 65673020 2010 CpG island CpG island 17502
Tssr56852 6 65671603 to 65671618 15 + TSS region transcription start site region 56852
Ndnf 6 65671611 to 65712323 40712 + protein coding gene neuron-derived neurotrophic factor
Tssr56853 6 65671756 to 65671770 14 + TSS region transcription start site region 56853
Gm15490 6 65757936 to 65758322 386 + pseudogene predicted gene 15490
Gm16838 6 65768544 to 65779249 10705 - antisense lncRNA gene predicted gene, 16838
Cpgi17503 6 65778641 to 65779471 830 CpG island CpG island 17503
Prdm5 6 65778988 to 65937010 158022 + protein coding gene PR domain containing 5
Tssr56854 6 65778994 to 65779062 68 + TSS region transcription start site region 56854
Tssr61222 6 65779636 to 65779642 6 - TSS region transcription start site region 61222
Tssr61223 6 65779689 to 65779694 5 - TSS region transcription start site region 61223
Tssr61224 6 65779697 to 65779706 9 - TSS region transcription start site region 61224
Tssr61225 6 65779714 to 65779723 9 - TSS region transcription start site region 61225
Tssr61226 6 65779773 to 65779778 5 - TSS region transcription start site region 61226
Tssr56855 6 65790008 to 65790009 1 + TSS region transcription start site region 56855
Tssr56856 6 65797507 to 65797528 21 + TSS region transcription start site region 56856
Tssr56857 6 65818309 to 65818318 9 + TSS region transcription start site region 56857
Gm23543 6 65864171 to 65864276 105 - snRNA gene predicted gene, 23543
Gm20445 6 65882779 to 65883343 564 + pseudogene predicted gene 20445
Tssr56858 6 65952550 to 65952553 3 + TSS region transcription start site region 56858
Tssr56859 6 65952561 to 65952621 60 + TSS region transcription start site region 56859
4930544G11Rik 6 65952609 to 65954014 1405 + protein coding gene RIKEN cDNA 4930544G11 gene
Gm44404 6 65981866 to 65983441 1575 - pseudogene predicted gene, 44404
Gm23625 6 65989640 to 65989739 99 - snRNA gene predicted gene, 23625
Gm5876 6 65995637 to 65996330 693 + pseudogene predicted gene 5876
Gm36408 6 66148439 to 66272364 123925 - lncRNA gene predicted gene, 36408
Gm44289 6 66254743 to 66258205 3462 + pseudogene predicted gene, 44289
Tssr56860 6 66264122 to 66264170 48 + TSS region transcription start site region 56860
Tssr56861 6 66267705 to 66267709 4 + TSS region transcription start site region 56861
Gm31520 6 66272505 to 66284845 12340 + pseudogene predicted gene, 31520
Gm38824 6 66311011 to 66315679 4668 - lncRNA gene predicted gene, 38824
Gm44281 6 66398551 to 66398716 165 - pseudogene predicted gene, 44281
Gm44233 6 66398746 to 66398971 225 + pseudogene predicted gene, 44233
2610300M13Rik 6 66451949 to 66465738 13789 - lincRNA gene RIKEN cDNA 2610300M13 gene
D6Mit95 6 66473452 to 66473565 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 95
Tpm3-rs3 6 66515891 to 66517730 1839 - pseudogene tropomyosin 3, related sequence 3
Gm19764 6 66515893 to 66516541 648 + pseudogene predicted gene, 19764
Gm6786 6 66527014 to 66528926 1912 + pseudogene predicted gene 6786
Cpgi17504 6 66534971 to 66535869 898 CpG island CpG island 17504
Mad2l1 6 66535226 to 66541109 5883 + protein coding gene MAD2 mitotic arrest deficient-like 1
Tssr56862 6 66535392 to 66535412 20 + TSS region transcription start site region 56862
Tssr56863 6 66535418 to 66535482 64 + TSS region transcription start site region 56863
Tssr56864 6 66537533 to 66537544 11 + TSS region transcription start site region 56864
Vmn1r32 6 66552183 to 66559708 7525 - protein coding gene vomeronasal 1 receptor 32
Gm5307 6 66577210 to 66577969 759 + pseudogene predicted gene 5307
Vmn1r33 6 66611651 to 66612568 917 - protein coding gene vomeronasal 1 receptor 33
Vmn1r34 6 66636823 to 66637752 929 - protein coding gene vomeronasal 1 receptor 34
Vmn1r35 6 66678794 to 66679684 890 - protein coding gene vomeronasal 1 receptor 35
Tssr56865 6 66711645 to 66711650 5 + TSS region transcription start site region 56865
Gm6794 6 66711691 to 66712147 456 + pseudogene predicted gene 6794
Vmn1r36 6 66715972 to 66716889 917 - protein coding gene vomeronasal 1 receptor 36
Vmn1r37 6 66731392 to 66732300 908 + protein coding gene vomeronasal 1 receptor 37
Gm44261 6 66733969 to 66734177 208 - pseudogene predicted gene, 44261
Gm4045 6 66746017 to 66746326 309 + pseudogene predicted gene 4045
Vmn1r-ps24 6 66753381 to 66754279 898 - pseudogene vomeronasal 1 receptor, pseudogene 24
Vmn1r38 6 66776222 to 66777130 908 - protein coding gene vomeronasal 1 receptor 38
Vmn1r39 6 66804415 to 66805332 917 - protein coding gene vomeronasal 1 receptor 39
Gm36610 6 66840015 to 66842976 2961 - lncRNA gene predicted gene, 36610
Gm9794 6 66875321 to 66875743 422 - pseudogene predicted pseudogene 9794
Tssr61227 6 66875427 to 66875434 7 - TSS region transcription start site region 61227
Tssr61228 6 66875650 to 66875689 39 - TSS region transcription start site region 61228
Tssr61229 6 66875749 to 66875766 17 - TSS region transcription start site region 61229
4930597O21Rik 6 66894652 to 66896521 1869 - unclassified non-coding RNA gene RIKEN cDNA 4930597O21 gene
Cpgi17505 6 66896073 to 66897462 1389 CpG island CpG island 17505
Gng12 6 66896397 to 67021350 124953 + protein coding gene guanine nucleotide binding protein (G protein), gamma 12
Tssr56866 6 66896410 to 66896421 11 + TSS region transcription start site region 56866
Tssr56867 6 66896429 to 66896440 11 + TSS region transcription start site region 56867
Tssr56868 6 66896444 to 66896479 35 + TSS region transcription start site region 56868
Tssr56869 6 66896480 to 66896492 12 + TSS region transcription start site region 56869
Tssr61230 6 66896515 to 66896516 1 - TSS region transcription start site region 61230
Tssr56870 6 66912642 to 66912646 4 + TSS region transcription start site region 56870
Tssr56871 6 66918511 to 66918523 12 + TSS region transcription start site region 56871
Tssr56872 6 66935861 to 66935877 16 + TSS region transcription start site region 56872
Tssr56873 6 66957026 to 66957031 5 + TSS region transcription start site region 56873
Tssr56874 6 66963306 to 66963309 3 + TSS region transcription start site region 56874
Tssr56875 6 66970504 to 66970534 30 + TSS region transcription start site region 56875
Gm36816 6 66990031 to 67009260 19229 - antisense lncRNA gene predicted gene, 36816
Gm15644 6 67012485 to 67012871 386 + pseudogene predicted gene 15644
Tssr56876 6 67017498 to 67017522 24 + TSS region transcription start site region 56876
Tssr56877 6 67017639 to 67017652 13 + TSS region transcription start site region 56877
Tssr56878 6 67019719 to 67019734 15 + TSS region transcription start site region 56878
Tssr56879 6 67020297 to 67020334 37 + TSS region transcription start site region 56879
Gm29848 6 67022177 to 67022471 294 + pseudogene predicted gene, 29848
Gm25260 6 67027043 to 67027176 133 + snRNA gene predicted gene, 25260
Tssr61231 6 67029824 to 67029838 14 - TSS region transcription start site region 61231
Gadd45a 6 67035096 to 67037407 2311 - protein coding gene growth arrest and DNA-damage-inducible 45 alpha
Tssr61232 6 67035294 to 67035299 5 - TSS region transcription start site region 61232
Tssr1865 6 67035509 to 67035520 11 - TSS region transcription start site region 1865
Tssr61233 6 67035527 to 67035544 17 - TSS region transcription start site region 61233
Cpgi17506 6 67036453 to 67037698 1245 CpG island CpG island 17506
E230016M11Rik 6 67036599 to 67080652 44053 + lncRNA gene RIKEN cDNA E230016M11 gene
Tssr56880 6 67036640 to 67036676 36 + TSS region transcription start site region 56880
Tssr56881 6 67037199 to 67037201 2 + TSS region transcription start site region 56881
Tssr61234 6 67037207 to 67037220 13 - TSS region transcription start site region 61234
Tssr61235 6 67037378 to 67037394 16 - TSS region transcription start site region 61235
Tssr61236 6 67037399 to 67037417 18 - TSS region transcription start site region 61236
Tssr56882 6 67052952 to 67052962 10 + TSS region transcription start site region 56882
Cpgi17507 6 67088955 to 67089144 189 CpG island CpG island 17507
Gm29928 6 67091931 to 67103262 11331 + lncRNA gene predicted gene, 29928
Cpgi17508 6 67113898 to 67114224 326 CpG island CpG island 17508
Tssr56883 6 67115671 to 67115708 37 + TSS region transcription start site region 56883
Tssr56884 6 67146237 to 67146277 40 + TSS region transcription start site region 56884
A430010J10Rik 6 67157801 to 67165108 7307 + unclassified non-coding RNA gene RIKEN cDNA A430010J10 gene
Gm38825 6 67178681 to 67186716 8035 - antisense lncRNA gene predicted gene, 38825
Tssr61237 6 67186568 to 67186601 33 - TSS region transcription start site region 61237
Tssr61238 6 67186646 to 67186676 30 - TSS region transcription start site region 61238
Tssr56885 6 67205505 to 67205523 18 + TSS region transcription start site region 56885
Gm8566 6 67205619 to 67206083 464 + pseudogene predicted pseudogene 8566
Gm44052 6 67221902 to 67222544 642 - pseudogene predicted gene, 44052
Tssr56886 6 67226445 to 67226456 11 + TSS region transcription start site region 56886
Tssr56887 6 67236767 to 67236775 8 + TSS region transcription start site region 56887
Tssr61239 6 67237888 to 67237899 11 - TSS region transcription start site region 61239
Tssr61240 6 67237902 to 67237913 11 - TSS region transcription start site region 61240
Tssr56888 6 67238115 to 67238129 14 + TSS region transcription start site region 56888
Gm44050 6 67252025 to 67252928 903 - pseudogene predicted gene, 44050
Cpgi17509 6 67266223 to 67268214 1991 CpG island CpG island 17509
Serbp1 6 67266979 to 67289302 22323 + protein coding gene serpine1 mRNA binding protein 1
Tssr56889 6 67266987 to 67267021 34 + TSS region transcription start site region 56889
Tssr61241 6 67267397 to 67267425 28 - TSS region transcription start site region 61241
Tssr56890 6 67270439 to 67270443 4 + TSS region transcription start site region 56890
Tssr56891 6 67271193 to 67271230 37 + TSS region transcription start site region 56891
Tssr61242 6 67271215 to 67271288 73 - TSS region transcription start site region 61242
Tssr56892 6 67271257 to 67271278 21 + TSS region transcription start site region 56892
Tssr56893 6 67271908 to 67271920 12 + TSS region transcription start site region 56893
Tssr56894 6 67271927 to 67271956 29 + TSS region transcription start site region 56894
Tssr56895 6 67271957 to 67271982 25 + TSS region transcription start site region 56895
Tssr61243 6 67271966 to 67271983 17 - TSS region transcription start site region 61243
Tssr56896 6 67272159 to 67272196 37 + TSS region transcription start site region 56896
Tssr56897 6 67272888 to 67272913 25 + TSS region transcription start site region 56897
Tssr56898 6 67277758 to 67277807 49 + TSS region transcription start site region 56898
Tssr56899 6 67277812 to 67277833 21 + TSS region transcription start site region 56899
Tssr56900 6 67278217 to 67278220 3 + TSS region transcription start site region 56900
Tssr56901 6 67282087 to 67282091 4 + TSS region transcription start site region 56901
Tssr56902 6 67283933 to 67283981 48 + TSS region transcription start site region 56902
Tssr61244 6 67284015 to 67284060 45 - TSS region transcription start site region 61244
Tssr56903 6 67285331 to 67285335 4 + TSS region transcription start site region 56903
Il12rb2 6 67291318 to 67376188 84870 - protein coding gene interleukin 12 receptor, beta 2
Tssr61245 6 67292254 to 67292265 11 - TSS region transcription start site region 61245
Tssr61246 6 67315263 to 67315270 7 - TSS region transcription start site region 61246
D6Dcr13 6 67332428 to 67332526 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 13
Tssr61247 6 67339639 to 67339657 18 - TSS region transcription start site region 61247
Tssr61248 6 67339661 to 67339674 13 - TSS region transcription start site region 61248
D6Dcr14 6 67346251 to 67346349 98 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 14
Cpgi17510 6 67375901 to 67376374 473 CpG island CpG island 17510
Tssr61249 6 67376118 to 67376129 11 - TSS region transcription start site region 61249
Tssr61250 6 67376134 to 67376144 10 - TSS region transcription start site region 61250
Tssr61251 6 67376147 to 67376171 24 - TSS region transcription start site region 61251
Tssr1866 6 67376236 to 67376250 14 - TSS region transcription start site region 1866
Tssr61252 6 67376288 to 67376311 23 - TSS region transcription start site region 61252
Gm8574 6 67384418 to 67385341 923 - pseudogene predicted gene 8574
Gm44208 6 67406486 to 67406906 420 - pseudogene predicted gene, 44208
Gm4761 6 67414431 to 67415012 581 - pseudogene predicted gene 4761
Gm44083 6 67417715 to 67418051 336 - pseudogene predicted gene, 44083
Il23r 6 67422932 to 67491855 68923 - protein coding gene interleukin 23 receptor