Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:65051294-65788150

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smarcad1 6 65042589 to 65116061 73472 + protein coding gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Tssr56817 6 65106803 to 65106808 5 + TSS region transcription start site region 56817
D6Rck333 6 65115794 to 65115956 162 DNA segment DNA segment, Chr 6, Rockefeller University 333
Hpgds 6 65117293 to 65144908 27615 - protein coding gene hematopoietic prostaglandin D synthase
Gm35906 6 65122407 to 65127323 4916 + lncRNA gene predicted gene, 35906
D6Mit174 6 65125444 to 65125579 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 174
Tssr61210 6 65125559 to 65125582 23 - TSS region transcription start site region 61210
Tssr61211 6 65125766 to 65125779 13 - TSS region transcription start site region 61211
Tssr61212 6 65125783 to 65125796 13 - TSS region transcription start site region 61212
Tssr61213 6 65127295 to 65127307 12 - TSS region transcription start site region 61213
Tssr61214 6 65127991 to 65128005 14 - TSS region transcription start site region 61214
Gm17147 6 65128571 to 65129002 431 + pseudogene predicted gene 17147
Tssr61215 6 65130007 to 65130034 27 - TSS region transcription start site region 61215
Tssr61216 6 65130937 to 65130951 14 - TSS region transcription start site region 61216
Tssr61217 6 65131446 to 65131451 5 - TSS region transcription start site region 61217
Tssr56818 6 65143061 to 65143072 11 + TSS region transcription start site region 56818
Tssr61218 6 65144705 to 65144765 60 - TSS region transcription start site region 61218
Tssr61219 6 65144836 to 65144842 6 - TSS region transcription start site region 61219
Tssr61220 6 65144927 to 65144940 13 - TSS region transcription start site region 61220
Tssr61221 6 65144982 to 65144999 17 - TSS region transcription start site region 61221
Tssr56819 6 65145166 to 65145199 33 + TSS region transcription start site region 56819
Cpgi17500 6 65150770 to 65151000 230 CpG island CpG island 17500
Tssr56820 6 65150795 to 65150813 18 + TSS region transcription start site region 56820
Gm44419 6 65150997 to 65151225 228 + pseudogene predicted gene, 44419
Gm3549 6 65169164 to 65169957 793 + pseudogene predicted gene 3549
D6Mit318 6 65211593 to 65211692 99 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 318
Gm44058 6 65213572 to 65214972 1400 - pseudogene predicted gene, 44058
Gm44059 6 65232712 to 65233062 350 - pseudogene predicted gene, 44059
Gm20177 6 65247273 to 65247606 333 + pseudogene predicted gene, 20177
D6Mit125 6 65266747 to 65266866 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 125
Gm44060 6 65271501 to 65271910 409 - pseudogene predicted gene, 44060
Gm44061 6 65272950 to 65274144 1194 - pseudogene predicted gene, 44061
Gm8479 6 65328120 to 65329149 1029 + pseudogene predicted gene 8479
Cpgi17501 6 65380880 to 65381677 797 CpG island CpG island 17501
C130060K24Rik 6 65381294 to 65458150 76856 + protein coding gene RIKEN cDNA C130060K24 gene
Gm18716 6 65416773 to 65417617 844 + pseudogene predicted gene, 18716
Gm18913 6 65432160 to 65433948 1788 + pseudogene predicted gene, 18913
Tssr56821 6 65432466 to 65432515 49 + TSS region transcription start site region 56821
Tssr56822 6 65432870 to 65432898 28 + TSS region transcription start site region 56822
Tssr56823 6 65433147 to 65433157 10 + TSS region transcription start site region 56823
D6Mit162 6 65485846 to 65485971 125 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 162
D6Mit162.1 6 65485947 to 65486071 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 162.1
Tssr56824 6 65525308 to 65525320 12 + TSS region transcription start site region 56824
Tssr56825 6 65525322 to 65525335 13 + TSS region transcription start site region 56825
Tssr56826 6 65525359 to 65525371 12 + TSS region transcription start site region 56826
Tssr56827 6 65590382 to 65590412 30 + TSS region transcription start site region 56827
Tnip3 6 65590398 to 65634040 43642 + protein coding gene TNFAIP3 interacting protein 3
Tssr56828 6 65590416 to 65590432 16 + TSS region transcription start site region 56828
Tssr56829 6 65590454 to 65590459 5 + TSS region transcription start site region 56829
Tssr56830 6 65594776 to 65594780 4 + TSS region transcription start site region 56830
Tssr56831 6 65596126 to 65596146 20 + TSS region transcription start site region 56831
Tssr56832 6 65596590 to 65596606 16 + TSS region transcription start site region 56832
Tssr56833 6 65597354 to 65597372 18 + TSS region transcription start site region 56833
Tssr56834 6 65601165 to 65601208 43 + TSS region transcription start site region 56834
Tssr56835 6 65601582 to 65601629 47 + TSS region transcription start site region 56835
Tssr56836 6 65602822 to 65602855 33 + TSS region transcription start site region 56836
Tssr56837 6 65612221 to 65612225 4 + TSS region transcription start site region 56837
Tssr56838 6 65621864 to 65621870 6 + TSS region transcription start site region 56838
Tssr56839 6 65625156 to 65625203 47 + TSS region transcription start site region 56839
Tssr56840 6 65625425 to 65625441 16 + TSS region transcription start site region 56840
Tssr56841 6 65627005 to 65627015 10 + TSS region transcription start site region 56841
Tssr56842 6 65627144 to 65627157 13 + TSS region transcription start site region 56842
Tssr56843 6 65627158 to 65627172 14 + TSS region transcription start site region 56843
Tssr56844 6 65631232 to 65631246 14 + TSS region transcription start site region 56844
Tssr56845 6 65631293 to 65631307 14 + TSS region transcription start site region 56845
Tssr56846 6 65631315 to 65631345 30 + TSS region transcription start site region 56846
Tssr56847 6 65631369 to 65631426 57 + TSS region transcription start site region 56847
Tssr56848 6 65631500 to 65631517 17 + TSS region transcription start site region 56848
Tssr56849 6 65631521 to 65631549 28 + TSS region transcription start site region 56849
Tssr56850 6 65631940 to 65631962 22 + TSS region transcription start site region 56850
D6Rck337 6 65642038 to 65642305 267 DNA segment DNA segment, Chr 6, Rockefeller University 337
Tssr56851 6 65653081 to 65653109 28 + TSS region transcription start site region 56851
Gm36144 6 65662049 to 65671247 9198 - lncRNA gene predicted gene, 36144
Cpgi17502 6 65671010 to 65673020 2010 CpG island CpG island 17502
Tssr56852 6 65671603 to 65671618 15 + TSS region transcription start site region 56852
Ndnf 6 65671611 to 65712323 40712 + protein coding gene neuron-derived neurotrophic factor
Tssr56853 6 65671756 to 65671770 14 + TSS region transcription start site region 56853
Gm15490 6 65757936 to 65758322 386 + pseudogene predicted gene 15490
Gm16838 6 65768544 to 65779249 10705 - antisense lncRNA gene predicted gene, 16838
Cpgi17503 6 65778641 to 65779471 830 CpG island CpG island 17503
Prdm5 6 65778988 to 65937010 158022 + protein coding gene PR domain containing 5
Tssr56854 6 65778994 to 65779062 68 + TSS region transcription start site region 56854
Tssr61222 6 65779636 to 65779642 6 - TSS region transcription start site region 61222
Tssr61223 6 65779689 to 65779694 5 - TSS region transcription start site region 61223
Tssr61224 6 65779697 to 65779706 9 - TSS region transcription start site region 61224
Tssr61225 6 65779714 to 65779723 9 - TSS region transcription start site region 61225
Tssr61226 6 65779773 to 65779778 5 - TSS region transcription start site region 61226