Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:64658641-66899471

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grid2 6 63255903 to 64704322 1448419 + protein coding gene glutamate receptor, ionotropic, delta 2
Gm35851 6 64704319 to 64728861 24542 - lncRNA gene predicted gene, 35851
Cpgi17496 6 64728015 to 64728287 272 CpG island CpG island 17496
Cpgi17497 6 64728983 to 64730523 1540 CpG island CpG island 17497
Tssr56800 6 64729118 to 64729132 14 + TSS region transcription start site region 56800
Atoh1 6 64729146 to 64731243 2097 + protein coding gene atonal bHLH transcription factor 1
Cpgi17498 6 64734358 to 64735148 790 CpG island CpG island 17498
Tssr56801 6 64734511 to 64734518 7 + TSS region transcription start site region 56801
Tssr1863 6 64734580 to 64734590 10 + TSS region transcription start site region 1863
Tssr56802 6 64734643 to 64734660 17 + TSS region transcription start site region 56802
Tssr56803 6 64734698 to 64734703 5 + TSS region transcription start site region 56803
D6Mit299 6 64777413 to 64777531 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 299
Gm18839 6 64878459 to 64879128 669 - pseudogene predicted gene, 18839
Lt1 6 64896953 to 64899441 2488 + pseudogene lurcher transcript 1
D6Rck330 6 64908774 to 64908951 177 DNA segment DNA segment, Chr 6, Rockefeller University 330
Gm44038 6 64978515 to 64979403 888 + pseudogene predicted gene, 44038
C530040J15Rik 6 64983701 to 64987162 3461 unclassified gene RIKEN cDNA C530040J15 gene
Gm15534 6 64990947 to 64991508 561 + pseudogene predicted gene 15534
D6Mit175 6 64994274 to 64994473 199 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 175
Tssr56804 6 65002418 to 65002434 16 + TSS region transcription start site region 56804
Tssr56805 6 65017862 to 65017869 7 + TSS region transcription start site region 56805
Tssr61205 6 65021921 to 65021935 14 - TSS region transcription start site region 61205
Tssr56806 6 65022121 to 65022132 11 + TSS region transcription start site region 56806
Tssr56807 6 65022191 to 65022202 11 + TSS region transcription start site region 56807
Tssr56808 6 65022203 to 65022214 11 + TSS region transcription start site region 56808
Tssr61206 6 65022369 to 65022374 5 - TSS region transcription start site region 61206
Tssr61207 6 65022742 to 65022753 11 - TSS region transcription start site region 61207
Tssr56809 6 65023381 to 65023390 9 + TSS region transcription start site region 56809
Tssr56810 6 65023399 to 65023413 14 + TSS region transcription start site region 56810
Tssr61208 6 65024704 to 65024725 21 - TSS region transcription start site region 61208
Tssr61209 6 65024745 to 65024759 14 - TSS region transcription start site region 61209
Tssr56811 6 65024963 to 65024974 11 + TSS region transcription start site region 56811
Cpgi17499 6 65042450 to 65043463 1013 CpG island CpG island 17499
Tssr56812 6 65042575 to 65042662 87 + TSS region transcription start site region 56812
Smarcad1 6 65042589 to 65116061 73472 + protein coding gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Tssr56813 6 65042684 to 65042695 11 + TSS region transcription start site region 56813
Tssr1864 6 65042704 to 65042707 3 + TSS region transcription start site region 1864
Tssr56814 6 65042708 to 65042719 11 + TSS region transcription start site region 56814
Tssr56815 6 65042807 to 65042900 93 + TSS region transcription start site region 56815
Tssr56816 6 65042908 to 65042911 3 + TSS region transcription start site region 56816
Tssr56817 6 65106803 to 65106808 5 + TSS region transcription start site region 56817
D6Rck333 6 65115794 to 65115956 162 DNA segment DNA segment, Chr 6, Rockefeller University 333
Hpgds 6 65117293 to 65144908 27615 - protein coding gene hematopoietic prostaglandin D synthase
Gm35906 6 65122407 to 65127323 4916 + lncRNA gene predicted gene, 35906
D6Mit174 6 65125444 to 65125579 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 174
Tssr61210 6 65125559 to 65125582 23 - TSS region transcription start site region 61210
Tssr61211 6 65125766 to 65125779 13 - TSS region transcription start site region 61211
Tssr61212 6 65125783 to 65125796 13 - TSS region transcription start site region 61212
Tssr61213 6 65127295 to 65127307 12 - TSS region transcription start site region 61213
Tssr61214 6 65127991 to 65128005 14 - TSS region transcription start site region 61214
Gm17147 6 65128571 to 65129002 431 + pseudogene predicted gene 17147
Tssr61215 6 65130007 to 65130034 27 - TSS region transcription start site region 61215
Tssr61216 6 65130937 to 65130951 14 - TSS region transcription start site region 61216
Tssr61217 6 65131446 to 65131451 5 - TSS region transcription start site region 61217
Tssr56818 6 65143061 to 65143072 11 + TSS region transcription start site region 56818
Tssr61218 6 65144705 to 65144765 60 - TSS region transcription start site region 61218
Tssr61219 6 65144836 to 65144842 6 - TSS region transcription start site region 61219
Tssr61220 6 65144927 to 65144940 13 - TSS region transcription start site region 61220
Tssr61221 6 65144982 to 65144999 17 - TSS region transcription start site region 61221
Tssr56819 6 65145166 to 65145199 33 + TSS region transcription start site region 56819
Cpgi17500 6 65150770 to 65151000 230 CpG island CpG island 17500
Tssr56820 6 65150795 to 65150813 18 + TSS region transcription start site region 56820
Gm44419 6 65150997 to 65151225 228 + pseudogene predicted gene, 44419
Gm3549 6 65169164 to 65169957 793 + pseudogene predicted gene 3549
D6Mit318 6 65211593 to 65211692 99 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 318
Gm44058 6 65213572 to 65214972 1400 - pseudogene predicted gene, 44058
Gm44059 6 65232712 to 65233062 350 - pseudogene predicted gene, 44059
Gm20177 6 65247273 to 65247606 333 + pseudogene predicted gene, 20177
D6Mit125 6 65266747 to 65266866 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 125
Gm44060 6 65271501 to 65271910 409 - pseudogene predicted gene, 44060
Gm44061 6 65272950 to 65274144 1194 - pseudogene predicted gene, 44061
Gm8479 6 65328120 to 65329149 1029 + pseudogene predicted gene 8479
Cpgi17501 6 65380880 to 65381677 797 CpG island CpG island 17501
C130060K24Rik 6 65381294 to 65458150 76856 + protein coding gene RIKEN cDNA C130060K24 gene
Gm18716 6 65416773 to 65417617 844 + pseudogene predicted gene, 18716
Gm18913 6 65432160 to 65433948 1788 + pseudogene predicted gene, 18913
Tssr56821 6 65432466 to 65432515 49 + TSS region transcription start site region 56821
Tssr56822 6 65432870 to 65432898 28 + TSS region transcription start site region 56822
Tssr56823 6 65433147 to 65433157 10 + TSS region transcription start site region 56823
D6Mit162 6 65485846 to 65485971 125 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 162
D6Mit162.1 6 65485947 to 65486071 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 162.1
Tssr56824 6 65525308 to 65525320 12 + TSS region transcription start site region 56824
Tssr56825 6 65525322 to 65525335 13 + TSS region transcription start site region 56825
Tssr56826 6 65525359 to 65525371 12 + TSS region transcription start site region 56826
Tssr56827 6 65590382 to 65590412 30 + TSS region transcription start site region 56827
Tnip3 6 65590398 to 65634040 43642 + protein coding gene TNFAIP3 interacting protein 3
Tssr56828 6 65590416 to 65590432 16 + TSS region transcription start site region 56828
Tssr56829 6 65590454 to 65590459 5 + TSS region transcription start site region 56829
Tssr56830 6 65594776 to 65594780 4 + TSS region transcription start site region 56830
Tssr56831 6 65596126 to 65596146 20 + TSS region transcription start site region 56831
Tssr56832 6 65596590 to 65596606 16 + TSS region transcription start site region 56832
Tssr56833 6 65597354 to 65597372 18 + TSS region transcription start site region 56833
Tssr56834 6 65601165 to 65601208 43 + TSS region transcription start site region 56834
Tssr56835 6 65601582 to 65601629 47 + TSS region transcription start site region 56835
Tssr56836 6 65602822 to 65602855 33 + TSS region transcription start site region 56836
Tssr56837 6 65612221 to 65612225 4 + TSS region transcription start site region 56837
Tssr56838 6 65621864 to 65621870 6 + TSS region transcription start site region 56838
Tssr56839 6 65625156 to 65625203 47 + TSS region transcription start site region 56839
Tssr56840 6 65625425 to 65625441 16 + TSS region transcription start site region 56840
Tssr56841 6 65627005 to 65627015 10 + TSS region transcription start site region 56841
Tssr56842 6 65627144 to 65627157 13 + TSS region transcription start site region 56842
Tssr56843 6 65627158 to 65627172 14 + TSS region transcription start site region 56843
Tssr56844 6 65631232 to 65631246 14 + TSS region transcription start site region 56844
Tssr56845 6 65631293 to 65631307 14 + TSS region transcription start site region 56845
Tssr56846 6 65631315 to 65631345 30 + TSS region transcription start site region 56846
Tssr56847 6 65631369 to 65631426 57 + TSS region transcription start site region 56847
Tssr56848 6 65631500 to 65631517 17 + TSS region transcription start site region 56848
Tssr56849 6 65631521 to 65631549 28 + TSS region transcription start site region 56849
Tssr56850 6 65631940 to 65631962 22 + TSS region transcription start site region 56850
D6Rck337 6 65642038 to 65642305 267 DNA segment DNA segment, Chr 6, Rockefeller University 337
Tssr56851 6 65653081 to 65653109 28 + TSS region transcription start site region 56851
Gm36144 6 65662049 to 65671247 9198 - lncRNA gene predicted gene, 36144
Cpgi17502 6 65671010 to 65673020 2010 CpG island CpG island 17502
Tssr56852 6 65671603 to 65671618 15 + TSS region transcription start site region 56852
Ndnf 6 65671611 to 65712323 40712 + protein coding gene neuron-derived neurotrophic factor
Tssr56853 6 65671756 to 65671770 14 + TSS region transcription start site region 56853
Gm15490 6 65757936 to 65758322 386 + pseudogene predicted gene 15490
Gm16838 6 65768544 to 65779249 10705 - antisense lncRNA gene predicted gene, 16838
Cpgi17503 6 65778641 to 65779471 830 CpG island CpG island 17503
Prdm5 6 65778988 to 65937010 158022 + protein coding gene PR domain containing 5
Tssr56854 6 65778994 to 65779062 68 + TSS region transcription start site region 56854
Tssr61222 6 65779636 to 65779642 6 - TSS region transcription start site region 61222
Tssr61223 6 65779689 to 65779694 5 - TSS region transcription start site region 61223
Tssr61224 6 65779697 to 65779706 9 - TSS region transcription start site region 61224
Tssr61225 6 65779714 to 65779723 9 - TSS region transcription start site region 61225
Tssr61226 6 65779773 to 65779778 5 - TSS region transcription start site region 61226
Tssr56855 6 65790008 to 65790009 1 + TSS region transcription start site region 56855
Tssr56856 6 65797507 to 65797528 21 + TSS region transcription start site region 56856
Tssr56857 6 65818309 to 65818318 9 + TSS region transcription start site region 56857
Gm23543 6 65864171 to 65864276 105 - snRNA gene predicted gene, 23543
Gm20445 6 65882779 to 65883343 564 + pseudogene predicted gene 20445
Tssr56858 6 65952550 to 65952553 3 + TSS region transcription start site region 56858
Tssr56859 6 65952561 to 65952621 60 + TSS region transcription start site region 56859
4930544G11Rik 6 65952609 to 65954014 1405 + protein coding gene RIKEN cDNA 4930544G11 gene
Gm44404 6 65981866 to 65983441 1575 - pseudogene predicted gene, 44404
Gm23625 6 65989640 to 65989739 99 - snRNA gene predicted gene, 23625
Gm5876 6 65995637 to 65996330 693 + pseudogene predicted gene 5876
Gm36408 6 66148439 to 66272364 123925 - lncRNA gene predicted gene, 36408
Gm44289 6 66254743 to 66258205 3462 + pseudogene predicted gene, 44289
Tssr56860 6 66264122 to 66264170 48 + TSS region transcription start site region 56860
Tssr56861 6 66267705 to 66267709 4 + TSS region transcription start site region 56861
Gm31520 6 66272505 to 66284845 12340 + pseudogene predicted gene, 31520
Gm38824 6 66311011 to 66315679 4668 - lncRNA gene predicted gene, 38824
Gm44281 6 66398551 to 66398716 165 - pseudogene predicted gene, 44281
Gm44233 6 66398746 to 66398971 225 + pseudogene predicted gene, 44233
2610300M13Rik 6 66451949 to 66465738 13789 - lincRNA gene RIKEN cDNA 2610300M13 gene
D6Mit95 6 66473452 to 66473565 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 95
Tpm3-rs3 6 66515891 to 66517730 1839 - pseudogene tropomyosin 3, related sequence 3
Gm19764 6 66515893 to 66516541 648 + pseudogene predicted gene, 19764
Gm6786 6 66527014 to 66528926 1912 + pseudogene predicted gene 6786
Cpgi17504 6 66534971 to 66535869 898 CpG island CpG island 17504
Mad2l1 6 66535226 to 66541109 5883 + protein coding gene MAD2 mitotic arrest deficient-like 1
Tssr56862 6 66535392 to 66535412 20 + TSS region transcription start site region 56862
Tssr56863 6 66535418 to 66535482 64 + TSS region transcription start site region 56863
Tssr56864 6 66537533 to 66537544 11 + TSS region transcription start site region 56864
Vmn1r32 6 66552183 to 66559708 7525 - protein coding gene vomeronasal 1 receptor 32
Gm5307 6 66577210 to 66577969 759 + pseudogene predicted gene 5307
Vmn1r33 6 66611651 to 66612568 917 - protein coding gene vomeronasal 1 receptor 33
Vmn1r34 6 66636823 to 66637752 929 - protein coding gene vomeronasal 1 receptor 34
Vmn1r35 6 66678794 to 66679684 890 - protein coding gene vomeronasal 1 receptor 35
Tssr56865 6 66711645 to 66711650 5 + TSS region transcription start site region 56865
Gm6794 6 66711691 to 66712147 456 + pseudogene predicted gene 6794
Vmn1r36 6 66715972 to 66716889 917 - protein coding gene vomeronasal 1 receptor 36
Vmn1r37 6 66731392 to 66732300 908 + protein coding gene vomeronasal 1 receptor 37
Gm44261 6 66733969 to 66734177 208 - pseudogene predicted gene, 44261
Gm4045 6 66746017 to 66746326 309 + pseudogene predicted gene 4045
Vmn1r-ps24 6 66753381 to 66754279 898 - pseudogene vomeronasal 1 receptor, pseudogene 24
Vmn1r38 6 66776222 to 66777130 908 - protein coding gene vomeronasal 1 receptor 38
Vmn1r39 6 66804415 to 66805332 917 - protein coding gene vomeronasal 1 receptor 39
Gm36610 6 66840015 to 66842976 2961 - lncRNA gene predicted gene, 36610
Gm9794 6 66875321 to 66875743 422 - pseudogene predicted pseudogene 9794
Tssr61227 6 66875427 to 66875434 7 - TSS region transcription start site region 61227
Tssr61228 6 66875650 to 66875689 39 - TSS region transcription start site region 61228
Tssr61229 6 66875749 to 66875766 17 - TSS region transcription start site region 61229
4930597O21Rik 6 66894652 to 66896521 1869 - unclassified non-coding RNA gene RIKEN cDNA 4930597O21 gene
Cpgi17505 6 66896073 to 66897462 1389 CpG island CpG island 17505
Gng12 6 66896397 to 67021350 124953 + protein coding gene guanine nucleotide binding protein (G protein), gamma 12
Tssr56866 6 66896410 to 66896421 11 + TSS region transcription start site region 56866
Tssr56867 6 66896429 to 66896440 11 + TSS region transcription start site region 56867
Tssr56868 6 66896444 to 66896479 35 + TSS region transcription start site region 56868
Tssr56869 6 66896480 to 66896492 12 + TSS region transcription start site region 56869
Tssr61230 6 66896515 to 66896516 1 - TSS region transcription start site region 61230