Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:6445053-8665067

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20617 6 6456189 to 6484487 28298 - lincRNA gene predicted gene 20617
Gm20685 6 6483022 to 6508616 25594 + lincRNA gene predicted gene 20685
Sem1 6 6558275 to 6578658 20383 - protein coding gene SEM1, 26S proteasome complex subunit
Tssr54875 6 6560403 to 6560418 15 + TSS region transcription start site region 54875
Cpgi17136 6 6578030 to 6579009 979 CpG island CpG island 17136
Tssr59769 6 6578562 to 6578573 11 - TSS region transcription start site region 59769
Tssr1776 6 6578576 to 6578592 16 - TSS region transcription start site region 1776
Tssr59770 6 6578594 to 6578672 78 - TSS region transcription start site region 59770
Tssr59771 6 6578682 to 6578689 7 - TSS region transcription start site region 59771
Gm20618 6 6633332 to 6682886 49554 - lincRNA gene predicted gene 20618
Gm18006 6 6645334 to 6647278 1944 - pseudogene predicted gene, 18006
Gm5873 6 6735427 to 6736492 1065 - pseudogene predicted gene 5873
Gm34871 6 6749483 to 6758922 9439 - lncRNA gene predicted gene, 34871
Tssr59772 6 6818025 to 6818029 4 - TSS region transcription start site region 59772
Dlx6os1 6 6820546 to 6869533 48987 - antisense lncRNA gene distal-less homeobox 6, opposite strand 1
Gm27699 6 6820942 to 6821121 179 + unclassified non-coding RNA gene predicted gene, 27699
Gm27905 6 6821129 to 6821335 206 + unclassified non-coding RNA gene predicted gene, 27905
Cpgi17137 6 6850353 to 6850738 385 CpG island CpG island 17137
Gm44094 6 6854222 to 6856251 2029 - unclassified gene predicted gene, 44094
Cpgi17138 6 6859809 to 6861111 1302 CpG island CpG island 17138
Cpgi17139 6 6861405 to 6861567 162 CpG island CpG island 17139
Tssr59773 6 6861642 to 6861655 13 - TSS region transcription start site region 59773
Tssr59774 6 6861678 to 6861685 7 - TSS region transcription start site region 59774
Tssr59775 6 6861737 to 6861740 3 - TSS region transcription start site region 59775
Cpgi17140 6 6862670 to 6863020 350 CpG island CpG island 17140
Tssr59776 6 6862828 to 6862838 10 - TSS region transcription start site region 59776
Tssr59777 6 6862839 to 6862856 17 - TSS region transcription start site region 59777
Tssr54876 6 6862962 to 6862979 17 + TSS region transcription start site region 54876
Tssr54877 6 6862988 to 6863002 14 + TSS region transcription start site region 54877
Tssr54878 6 6863269 to 6863272 3 + TSS region transcription start site region 54878
Cpgi17141 6 6863275 to 6864962 1687 CpG island CpG island 17141
Dlx6 6 6863334 to 6867970 4636 + protein coding gene distal-less homeobox 6
Tssr54879 6 6863551 to 6863570 19 + TSS region transcription start site region 54879
Tssr54880 6 6863769 to 6863781 12 + TSS region transcription start site region 54880
Dlx6os2 6 6863797 to 6865150 1353 - antisense lncRNA gene distal-less homeobox 6, opposite strand 2
Tssr54881 6 6867869 to 6867879 10 + TSS region transcription start site region 54881
Tssr59778 6 6869365 to 6869368 3 - TSS region transcription start site region 59778
Tssr59779 6 6869489 to 6869503 14 - TSS region transcription start site region 59779
Tssr59780 6 6869517 to 6869539 22 - TSS region transcription start site region 59780
Tssr59781 6 6871533 to 6871538 5 - TSS region transcription start site region 59781
Tssr59782 6 6871562 to 6871573 11 - TSS region transcription start site region 59782
Tssr59783 6 6871588 to 6871589 1 - TSS region transcription start site region 59783
Tssr59784 6 6871621 to 6871635 14 - TSS region transcription start site region 59784
Cpgi17142 6 6874446 to 6874805 359 CpG island CpG island 17142
Dlx5 6 6877801 to 6882068 4267 - protein coding gene distal-less homeobox 5
Tssr59785 6 6877952 to 6877955 3 - TSS region transcription start site region 59785
Cpgi17143 6 6878145 to 6879644 1499 CpG island CpG island 17143
Cpgi17144 6 6879971 to 6880268 297 CpG island CpG island 17144
Cpgi17145 6 6881079 to 6882200 1121 CpG island CpG island 17145
Tssr59786 6 6881117 to 6881132 15 - TSS region transcription start site region 59786
Tssr59787 6 6881928 to 6881949 21 - TSS region transcription start site region 59787
Tssr59788 6 6881950 to 6881985 35 - TSS region transcription start site region 59788
Tssr59789 6 6881986 to 6882007 21 - TSS region transcription start site region 59789
Tssr59790 6 6882076 to 6882092 16 - TSS region transcription start site region 59790
Gm22155 6 6924118 to 6924279 161 - snRNA gene predicted gene, 22155
D6Mit139 6 6931487 to 6931600 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 139
Gm26774 6 6952170 to 6955900 3730 - lincRNA gene predicted gene, 26774
Cpgi17146 6 6955816 to 6956477 661 CpG island CpG island 17146
Tssr54882 6 6955993 to 6956049 56 + TSS region transcription start site region 54882
Sdhaf3 6 6956018 to 7039220 83202 + protein coding gene succinate dehydrogenase complex assembly factor 3
Tssr54883 6 7036909 to 7036913 4 + TSS region transcription start site region 54883
Gm27190 6 7193548 to 7194172 624 - pseudogene predicted gene 27190
Gm8669 6 7194272 to 7195216 944 + pseudogene predicted gene 8669
Gm19272 6 7301908 to 7309747 7839 + lincRNA gene predicted gene, 19272
Tssr54884 6 7301915 to 7301934 19 + TSS region transcription start site region 54884
Gm44046 6 7375967 to 7378644 2677 + unclassified gene predicted gene, 44046
Tssr59791 6 7441738 to 7441742 4 - TSS region transcription start site region 59791
Gm44048 6 7540954 to 7541314 360 + pseudogene predicted gene, 44048
Cpgi17147 6 7554795 to 7555719 924 CpG island CpG island 17147
Tac1 6 7554885 to 7562978 8093 + protein coding gene tachykinin 1
Tssr54885 6 7555053 to 7555067 14 + TSS region transcription start site region 54885
Tssr54886 6 7562342 to 7562345 3 + TSS region transcription start site region 54886
Tssr54887 6 7562353 to 7562354 1 + TSS region transcription start site region 54887
Tssr54888 6 7562362 to 7562373 11 + TSS region transcription start site region 54888
Gm35051 6 7627525 to 7672914 45389 + lncRNA gene predicted gene, 35051
Gm8676 6 7643906 to 7644542 636 + pseudogene predicted gene 8676
Asns 6 7675165 to 7693182 18017 - protein coding gene asparagine synthetase
Tssr59792 6 7677321 to 7677332 11 - TSS region transcription start site region 59792
Tssr59793 6 7692463 to 7692469 6 - TSS region transcription start site region 59793
Cpgi17148 6 7692598 to 7693461 863 CpG island CpG island 17148
Tssr59794 6 7692855 to 7692864 9 - TSS region transcription start site region 59794
Tssr59795 6 7692867 to 7692903 36 - TSS region transcription start site region 59795
Tssr59796 6 7692904 to 7692914 10 - TSS region transcription start site region 59796
Tssr59797 6 7693153 to 7693169 16 - TSS region transcription start site region 59797
Tssr59798 6 7693184 to 7693244 60 - TSS region transcription start site region 59798
Tssr59799 6 7694814 to 7694829 15 - TSS region transcription start site region 59799
Gm46950 6 7724273 to 7725056 783 + lncRNA gene predicted gene, 46950
1700012J15Rik 6 7766394 to 7777681 11287 + lincRNA gene RIKEN cDNA 1700012J15 gene
Tssr59800 6 7773670 to 7773677 7 - TSS region transcription start site region 59800
Gm35194 6 7809333 to 7818015 8682 - lncRNA gene predicted gene, 35194
Tssr59801 6 7818021 to 7818037 16 - TSS region transcription start site region 59801
Gm8686 6 7835272 to 7835659 387 - pseudogene predicted gene 8686
Cpgi17149 6 7844476 to 7845423 947 CpG island CpG island 17149
Tssr54889 6 7844633 to 7844677 44 + TSS region transcription start site region 54889
Tssr54890 6 7844766 to 7844803 37 + TSS region transcription start site region 54890
Tssr54891 6 7844806 to 7844859 53 + TSS region transcription start site region 54891
C1galt1 6 7845224 to 7872042 26818 + protein coding gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
Tssr54892 6 7845251 to 7845299 48 + TSS region transcription start site region 54892
Tssr54893 6 7845318 to 7845329 11 + TSS region transcription start site region 54893
Tssr54894 6 7846977 to 7846982 5 + TSS region transcription start site region 54894
Gm43961 6 7853871 to 7855742 1871 + unclassified gene predicted gene, 43961
Gm43962 6 7863187 to 7863376 189 - pseudogene predicted gene, 43962
Tssr54895 6 7871559 to 7871563 4 + TSS region transcription start site region 54895
Gm22276 6 7879563 to 7879691 128 + snoRNA gene predicted gene, 22276
Gm35246 6 7901086 to 7945346 44260 - lncRNA gene predicted gene, 35246
Gm35446 6 7980785 to 8036525 55740 + lncRNA gene predicted gene, 35446
Gm9825 6 7982541 to 7983383 842 - pseudogene predicted gene 9825
Tssr59802 6 7983042 to 7983062 20 - TSS region transcription start site region 59802
Tssr59803 6 7983424 to 7983445 21 - TSS region transcription start site region 59803
Col28a1 6 7997808 to 8192617 194809 - protein coding gene collagen, type XXVIII, alpha 1
Gm35384 6 7999834 to 8000509 675 + lncRNA gene predicted gene, 35384
D6Mit348 6 8105107 to 8105253 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 348
Tssr59804 6 8171358 to 8171359 1 - TSS region transcription start site region 59804
Tssr59805 6 8180214 to 8180258 44 - TSS region transcription start site region 59805
Tssr59806 6 8180259 to 8180270 11 - TSS region transcription start site region 59806
Tssr59807 6 8193674 to 8193706 32 - TSS region transcription start site region 59807
Cpgi17150 6 8208969 to 8209818 849 CpG island CpG island 17150
Tssr54896 6 8209216 to 8209263 47 + TSS region transcription start site region 54896
Mios 6 8209222 to 8236274 27052 + protein coding gene meiosis regulator for oocyte development
Tssr54897 6 8209289 to 8209351 62 + TSS region transcription start site region 54897
Tssr54898 6 8217382 to 8217386 4 + TSS region transcription start site region 54898
Gm46951 6 8237027 to 8244935 7908 + lncRNA gene predicted gene, 46951
D6Dcr2 6 8253036 to 8253139 103 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 2
Rpa3 6 8255936 to 8259141 3205 - protein coding gene replication protein A3
Cpgi17151 6 8258836 to 8259747 911 CpG island CpG island 17151
Tssr59808 6 8259098 to 8259153 55 - TSS region transcription start site region 59808
Umad1 6 8259288 to 8428767 169479 + protein coding gene UMAP1-MVP12 associated (UMA) domain containing 1
Tssr54899 6 8259295 to 8259312 17 + TSS region transcription start site region 54899
Tssr54900 6 8259327 to 8259342 15 + TSS region transcription start site region 54900
Tssr54901 6 8259366 to 8259378 12 + TSS region transcription start site region 54901
Tssr54902 6 8259379 to 8259460 81 + TSS region transcription start site region 54902
Gm45062 6 8259450 to 8597480 338030 + protein coding gene predicted gene 45062
D6Dcr3 6 8287720 to 8287815 95 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 3
Gm46952 6 8333324 to 8346092 12768 - lncRNA gene predicted gene, 46952
Gm16055 6 8354056 to 8364136 10080 - antisense lncRNA gene predicted gene 16055
Tssr54903 6 8363123 to 8363127 4 + TSS region transcription start site region 54903
Tssr59809 6 8364310 to 8364321 11 - TSS region transcription start site region 59809
Tssr59810 6 8364467 to 8364477 10 - TSS region transcription start site region 59810
Tssr54904 6 8364593 to 8364607 14 + TSS region transcription start site region 54904
Gm8428 6 8377596 to 8379379 1783 - pseudogene predicted gene 8428
Tssr54905 6 8397072 to 8397075 3 + TSS region transcription start site region 54905
1810015A16Rik 6 8414254 to 8415781 1527 unclassified gene RIKEN cDNA 1810015A16 gene
Gm16043 6 8420009 to 8443455 23446 - antisense lncRNA gene predicted gene 16043
Gm24059 6 8439353 to 8439664 311 + unclassified non-coding RNA gene predicted gene, 24059
Gm26075 6 8501236 to 8501356 120 - snoRNA gene predicted gene, 26075
Tssr54906 6 8504114 to 8504125 11 + TSS region transcription start site region 54906
A430035B10Rik 6 8507059 to 8509161 2102 - lncRNA gene RIKEN cDNA A430035B10 gene
Cpgi17152 6 8508952 to 8510626 1674 CpG island CpG island 17152
Tssr59811 6 8509101 to 8509144 43 - TSS region transcription start site region 59811
Tssr54907 6 8509387 to 8509437 50 + TSS region transcription start site region 54907
Tssr54908 6 8509444 to 8509449 5 + TSS region transcription start site region 54908
Glcci1 6 8509600 to 8597548 87948 + protein coding gene glucocorticoid induced transcript 1
Tssr54909 6 8509783 to 8509794 11 + TSS region transcription start site region 54909
Tssr54910 6 8509797 to 8509800 3 + TSS region transcription start site region 54910
Tssr54911 6 8509801 to 8509815 14 + TSS region transcription start site region 54911
Tssr54912 6 8509828 to 8509848 20 + TSS region transcription start site region 54912
Tssr54913 6 8509857 to 8509875 18 + TSS region transcription start site region 54913
Tssr54914 6 8509908 to 8509929 21 + TSS region transcription start site region 54914
Edlmmq4 6 8514064 to 8514064 0 QTL extensor digitorum longus muscle mass QTL 4
Gmmq3 6 8514064 to 8514064 0 QTL gastrocnemius muscle mass QTL 3
Tammq3 6 8514064 to 8514064 0 QTL tibialis anterior muscle mass QTL 3
Tssr54915 6 8517809 to 8517849 40 + TSS region transcription start site region 54915
Tssr54916 6 8520008 to 8520047 39 + TSS region transcription start site region 54916
Tssr54917 6 8521884 to 8521895 11 + TSS region transcription start site region 54917
Tssr54918 6 8524169 to 8524170 1 + TSS region transcription start site region 54918
Tssr54919 6 8527260 to 8527268 8 + TSS region transcription start site region 54919
Tssr1777 6 8532085 to 8532089 4 + TSS region transcription start site region 1777
Tssr54920 6 8544573 to 8544587 14 + TSS region transcription start site region 54920
Tssr54921 6 8545325 to 8545329 4 + TSS region transcription start site region 54921
Tssr54922 6 8550370 to 8550375 5 + TSS region transcription start site region 54922
Tssr54923 6 8580634 to 8580635 1 + TSS region transcription start site region 54923
Tssr54924 6 8594279 to 8594288 9 + TSS region transcription start site region 54924
Gm16042 6 8595743 to 8596989 1246 - pseudogene predicted gene 16042
Gm35621 6 8622836 to 8624877 2041 + lncRNA gene predicted gene, 35621
Ica1 6 8630527 to 8778488 147961 - protein coding gene islet cell autoantigen 1
Tssr59812 6 8647781 to 8647792 11 - TSS region transcription start site region 59812
Tssr59813 6 8647798 to 8647806 8 - TSS region transcription start site region 59813