Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:6425334-6867278

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20617 6 6456189 to 6484487 28298 - lincRNA gene predicted gene 20617
Gm20685 6 6483022 to 6508616 25594 + lincRNA gene predicted gene 20685
Sem1 6 6558275 to 6578658 20383 - protein coding gene SEM1, 26S proteasome complex subunit
Tssr54875 6 6560403 to 6560418 15 + TSS region transcription start site region 54875
Cpgi17136 6 6578030 to 6579009 979 CpG island CpG island 17136
Tssr59769 6 6578562 to 6578573 11 - TSS region transcription start site region 59769
Tssr1776 6 6578576 to 6578592 16 - TSS region transcription start site region 1776
Tssr59770 6 6578594 to 6578672 78 - TSS region transcription start site region 59770
Tssr59771 6 6578682 to 6578689 7 - TSS region transcription start site region 59771
Gm20618 6 6633332 to 6682886 49554 - lincRNA gene predicted gene 20618
Gm18006 6 6645334 to 6647278 1944 - pseudogene predicted gene, 18006
Gm5873 6 6735427 to 6736492 1065 - pseudogene predicted gene 5873
Gm34871 6 6749483 to 6758922 9439 - lncRNA gene predicted gene, 34871
Tssr59772 6 6818025 to 6818029 4 - TSS region transcription start site region 59772
Dlx6os1 6 6820546 to 6869533 48987 - antisense lncRNA gene distal-less homeobox 6, opposite strand 1
Gm27699 6 6820942 to 6821121 179 + unclassified non-coding RNA gene predicted gene, 27699
Gm27905 6 6821129 to 6821335 206 + unclassified non-coding RNA gene predicted gene, 27905
Cpgi17137 6 6850353 to 6850738 385 CpG island CpG island 17137
Gm44094 6 6854222 to 6856251 2029 - unclassified gene predicted gene, 44094
Cpgi17138 6 6859809 to 6861111 1302 CpG island CpG island 17138
Cpgi17139 6 6861405 to 6861567 162 CpG island CpG island 17139
Tssr59773 6 6861642 to 6861655 13 - TSS region transcription start site region 59773
Tssr59774 6 6861678 to 6861685 7 - TSS region transcription start site region 59774
Tssr59775 6 6861737 to 6861740 3 - TSS region transcription start site region 59775
Cpgi17140 6 6862670 to 6863020 350 CpG island CpG island 17140
Tssr59776 6 6862828 to 6862838 10 - TSS region transcription start site region 59776
Tssr59777 6 6862839 to 6862856 17 - TSS region transcription start site region 59777
Tssr54876 6 6862962 to 6862979 17 + TSS region transcription start site region 54876
Tssr54877 6 6862988 to 6863002 14 + TSS region transcription start site region 54877
Tssr54878 6 6863269 to 6863272 3 + TSS region transcription start site region 54878
Cpgi17141 6 6863275 to 6864962 1687 CpG island CpG island 17141
Dlx6 6 6863334 to 6867970 4636 + protein coding gene distal-less homeobox 6
Tssr54879 6 6863551 to 6863570 19 + TSS region transcription start site region 54879
Tssr54880 6 6863769 to 6863781 12 + TSS region transcription start site region 54880
Dlx6os2 6 6863797 to 6865150 1353 - antisense lncRNA gene distal-less homeobox 6, opposite strand 2