Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:62371006-65589321

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccser1 6 61180325 to 62382863 1202538 + protein coding gene coiled-coil serine rich 1
Gm19237 6 62582103 to 62583184 1081 + pseudogene predicted gene, 19237
Gm44088 6 62630581 to 62630817 236 + pseudogene predicted gene, 44088
Tssr56778 6 62638159 to 62638186 27 + TSS region transcription start site region 56778
D6Mit94 6 62665403 to 62665574 171 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 94
Gm44092 6 62756797 to 62757054 257 + pseudogene predicted gene, 44092
Gm18540 6 62820108 to 62820633 525 + pseudogene predicted gene, 18540
Gm5001 6 62929146 to 62929476 330 + pseudogene predicted gene 5001
Tssr61203 6 63031014 to 63031015 1 - TSS region transcription start site region 61203
Gm19131 6 63046128 to 63046733 605 - pseudogene predicted gene, 19131
Nasp-ps1 6 63160275 to 63160965 690 + pseudogene nuclear autoantigenic sperm protein (histone-binding), pseudogene 1
Gm22212 6 63200041 to 63200146 105 - snRNA gene predicted gene, 22212
Gm46990 6 63245820 to 63249235 3415 + lncRNA gene predicted gene, 46990
9330118I20Rik 6 63248494 to 63257625 9131 - unclassified gene RIKEN cDNA 9330118I20 gene
Tssr56779 6 63255877 to 63255886 9 + TSS region transcription start site region 56779
Tssr56780 6 63255892 to 63255903 11 + TSS region transcription start site region 56780
Cpgi17495 6 63255898 to 63258090 2192 CpG island CpG island 17495
Grid2 6 63255903 to 64704322 1448419 + protein coding gene glutamate receptor, ionotropic, delta 2
Tssr56781 6 63255935 to 63255954 19 + TSS region transcription start site region 56781
Tssr56782 6 63255971 to 63256036 65 + TSS region transcription start site region 56782
Tssr56783 6 63256052 to 63256069 17 + TSS region transcription start site region 56783
Tssr56784 6 63256094 to 63256104 10 + TSS region transcription start site region 56784
Tssr56785 6 63256107 to 63256126 19 + TSS region transcription start site region 56785
Tssr56786 6 63256359 to 63256381 22 + TSS region transcription start site region 56786
Tssr56787 6 63256621 to 63256627 6 + TSS region transcription start site region 56787
Tssr56788 6 63257807 to 63257809 2 + TSS region transcription start site region 56788
Tssr56789 6 63257913 to 63257923 10 + TSS region transcription start site region 56789
Gm44071 6 63324672 to 63328441 3769 - antisense lncRNA gene predicted gene, 44071
Tssr61204 6 63328436 to 63328449 13 - TSS region transcription start site region 61204
Tssr56790 6 63331509 to 63331512 3 + TSS region transcription start site region 56790
Tssr56791 6 63336734 to 63336737 3 + TSS region transcription start site region 56791
D6Rck301 6 63360427 to 63360673 246 DNA segment DNA segment, Chr 6, Rockefeller University 301
D6Mit121 6 63430907 to 63431001 94 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 121
Tssr56792 6 63516212 to 63516239 27 + TSS region transcription start site region 56792
Tssr56793 6 63546758 to 63546760 2 + TSS region transcription start site region 56793
Tssr56794 6 63553122 to 63553129 7 + TSS region transcription start site region 56794
Tssr56795 6 63579836 to 63579839 3 + TSS region transcription start site region 56795
Tssr56796 6 63599418 to 63599423 5 + TSS region transcription start site region 56796
Tssr56797 6 63605435 to 63605440 5 + TSS region transcription start site region 56797
9630021D06Rik 6 63637496 to 63640454 2958 unclassified non-coding RNA gene RIKEN cDNA 9630021D06 gene
D6Rck314 6 63734784 to 63735034 250 DNA segment DNA segment, Chr 6, Rockefeller University 314
Tssr56798 6 63746563 to 63746566 3 + TSS region transcription start site region 56798
Gm44075 6 63783852 to 63784067 215 - pseudogene predicted gene, 44075
D6Rck317 6 63856011 to 63856294 283 DNA segment DNA segment, Chr 6, Rockefeller University 317
Tssr56799 6 63913431 to 63913440 9 + TSS region transcription start site region 56799
D6Rck325 6 63946662 to 63946912 250 DNA segment DNA segment, Chr 6, Rockefeller University 325
D6Rck324 6 64002408 to 64002716 308 DNA segment DNA segment, Chr 6, Rockefeller University 324
Gm44072 6 64040429 to 64041557 1128 - antisense lncRNA gene predicted gene, 44072
D6Rck344 6 64079597 to 64079884 287 DNA segment DNA segment, Chr 6, Rockefeller University 344
Gm20144 6 64092139 to 64092303 164 + pseudogene predicted gene, 20144
D6Rck345 6 64154051 to 64154350 299 DNA segment DNA segment, Chr 6, Rockefeller University 345
D6Rck346 6 64169062 to 64169408 346 DNA segment DNA segment, Chr 6, Rockefeller University 346
D6Rck347 6 64218647 to 64218866 219 DNA segment DNA segment, Chr 6, Rockefeller University 347
D6Rck354 6 64395641 to 64395970 329 DNA segment DNA segment, Chr 6, Rockefeller University 354
Gm25205 6 64413648 to 64413750 102 + snRNA gene predicted gene, 25205
D6Rck357 6 64444989 to 64445252 263 DNA segment DNA segment, Chr 6, Rockefeller University 357
D6Rck358 6 64447738 to 64448093 355 DNA segment DNA segment, Chr 6, Rockefeller University 358
D6Rck359 6 64447814 to 64448093 279 DNA segment DNA segment, Chr 6, Rockefeller University 359
D6Rck360 6 64465813 to 64466075 262 DNA segment DNA segment, Chr 6, Rockefeller University 360
D6Rck362 6 64485276 to 64485568 292 DNA segment DNA segment, Chr 6, Rockefeller University 362
D6Rck365 6 64623051 to 64623167 116 DNA segment DNA segment, Chr 6, Rockefeller University 365
Gm35851 6 64704319 to 64728861 24542 - lncRNA gene predicted gene, 35851
Cpgi17496 6 64728015 to 64728287 272 CpG island CpG island 17496
Cpgi17497 6 64728983 to 64730523 1540 CpG island CpG island 17497
Tssr56800 6 64729118 to 64729132 14 + TSS region transcription start site region 56800
Atoh1 6 64729146 to 64731243 2097 + protein coding gene atonal bHLH transcription factor 1
Cpgi17498 6 64734358 to 64735148 790 CpG island CpG island 17498
Tssr56801 6 64734511 to 64734518 7 + TSS region transcription start site region 56801
Tssr1863 6 64734580 to 64734590 10 + TSS region transcription start site region 1863
Tssr56802 6 64734643 to 64734660 17 + TSS region transcription start site region 56802
Tssr56803 6 64734698 to 64734703 5 + TSS region transcription start site region 56803
D6Mit299 6 64777413 to 64777531 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 299
Gm18839 6 64878459 to 64879128 669 - pseudogene predicted gene, 18839
Lt1 6 64896953 to 64899441 2488 + pseudogene lurcher transcript 1
D6Rck330 6 64908774 to 64908951 177 DNA segment DNA segment, Chr 6, Rockefeller University 330
Gm44038 6 64978515 to 64979403 888 + pseudogene predicted gene, 44038
C530040J15Rik 6 64983701 to 64987162 3461 unclassified gene RIKEN cDNA C530040J15 gene
Gm15534 6 64990947 to 64991508 561 + pseudogene predicted gene 15534
D6Mit175 6 64994274 to 64994473 199 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 175
Tssr56804 6 65002418 to 65002434 16 + TSS region transcription start site region 56804
Tssr56805 6 65017862 to 65017869 7 + TSS region transcription start site region 56805
Tssr61205 6 65021921 to 65021935 14 - TSS region transcription start site region 61205
Tssr56806 6 65022121 to 65022132 11 + TSS region transcription start site region 56806
Tssr56807 6 65022191 to 65022202 11 + TSS region transcription start site region 56807
Tssr56808 6 65022203 to 65022214 11 + TSS region transcription start site region 56808
Tssr61206 6 65022369 to 65022374 5 - TSS region transcription start site region 61206
Tssr61207 6 65022742 to 65022753 11 - TSS region transcription start site region 61207
Tssr56809 6 65023381 to 65023390 9 + TSS region transcription start site region 56809
Tssr56810 6 65023399 to 65023413 14 + TSS region transcription start site region 56810
Tssr61208 6 65024704 to 65024725 21 - TSS region transcription start site region 61208
Tssr61209 6 65024745 to 65024759 14 - TSS region transcription start site region 61209
Tssr56811 6 65024963 to 65024974 11 + TSS region transcription start site region 56811
Cpgi17499 6 65042450 to 65043463 1013 CpG island CpG island 17499
Tssr56812 6 65042575 to 65042662 87 + TSS region transcription start site region 56812
Smarcad1 6 65042589 to 65116061 73472 + protein coding gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Tssr56813 6 65042684 to 65042695 11 + TSS region transcription start site region 56813
Tssr1864 6 65042704 to 65042707 3 + TSS region transcription start site region 1864
Tssr56814 6 65042708 to 65042719 11 + TSS region transcription start site region 56814
Tssr56815 6 65042807 to 65042900 93 + TSS region transcription start site region 56815
Tssr56816 6 65042908 to 65042911 3 + TSS region transcription start site region 56816
Tssr56817 6 65106803 to 65106808 5 + TSS region transcription start site region 56817
D6Rck333 6 65115794 to 65115956 162 DNA segment DNA segment, Chr 6, Rockefeller University 333
Hpgds 6 65117293 to 65144908 27615 - protein coding gene hematopoietic prostaglandin D synthase
Gm35906 6 65122407 to 65127323 4916 + lncRNA gene predicted gene, 35906
D6Mit174 6 65125444 to 65125579 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 174
Tssr61210 6 65125559 to 65125582 23 - TSS region transcription start site region 61210
Tssr61211 6 65125766 to 65125779 13 - TSS region transcription start site region 61211
Tssr61212 6 65125783 to 65125796 13 - TSS region transcription start site region 61212
Tssr61213 6 65127295 to 65127307 12 - TSS region transcription start site region 61213
Tssr61214 6 65127991 to 65128005 14 - TSS region transcription start site region 61214
Gm17147 6 65128571 to 65129002 431 + pseudogene predicted gene 17147
Tssr61215 6 65130007 to 65130034 27 - TSS region transcription start site region 61215
Tssr61216 6 65130937 to 65130951 14 - TSS region transcription start site region 61216
Tssr61217 6 65131446 to 65131451 5 - TSS region transcription start site region 61217
Tssr56818 6 65143061 to 65143072 11 + TSS region transcription start site region 56818
Tssr61218 6 65144705 to 65144765 60 - TSS region transcription start site region 61218
Tssr61219 6 65144836 to 65144842 6 - TSS region transcription start site region 61219
Tssr61220 6 65144927 to 65144940 13 - TSS region transcription start site region 61220
Tssr61221 6 65144982 to 65144999 17 - TSS region transcription start site region 61221
Tssr56819 6 65145166 to 65145199 33 + TSS region transcription start site region 56819
Cpgi17500 6 65150770 to 65151000 230 CpG island CpG island 17500
Tssr56820 6 65150795 to 65150813 18 + TSS region transcription start site region 56820
Gm44419 6 65150997 to 65151225 228 + pseudogene predicted gene, 44419
Gm3549 6 65169164 to 65169957 793 + pseudogene predicted gene 3549
D6Mit318 6 65211593 to 65211692 99 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 318
Gm44058 6 65213572 to 65214972 1400 - pseudogene predicted gene, 44058
Gm44059 6 65232712 to 65233062 350 - pseudogene predicted gene, 44059
Gm20177 6 65247273 to 65247606 333 + pseudogene predicted gene, 20177
D6Mit125 6 65266747 to 65266866 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 125
Gm44060 6 65271501 to 65271910 409 - pseudogene predicted gene, 44060
Gm44061 6 65272950 to 65274144 1194 - pseudogene predicted gene, 44061
Gm8479 6 65328120 to 65329149 1029 + pseudogene predicted gene 8479
Cpgi17501 6 65380880 to 65381677 797 CpG island CpG island 17501
C130060K24Rik 6 65381294 to 65458150 76856 + protein coding gene RIKEN cDNA C130060K24 gene
Gm18716 6 65416773 to 65417617 844 + pseudogene predicted gene, 18716
Gm18913 6 65432160 to 65433948 1788 + pseudogene predicted gene, 18913
Tssr56821 6 65432466 to 65432515 49 + TSS region transcription start site region 56821
Tssr56822 6 65432870 to 65432898 28 + TSS region transcription start site region 56822
Tssr56823 6 65433147 to 65433157 10 + TSS region transcription start site region 56823
D6Mit162 6 65485846 to 65485971 125 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 162
D6Mit162.1 6 65485947 to 65486071 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 162.1
Tssr56824 6 65525308 to 65525320 12 + TSS region transcription start site region 56824
Tssr56825 6 65525322 to 65525335 13 + TSS region transcription start site region 56825
Tssr56826 6 65525359 to 65525371 12 + TSS region transcription start site region 56826