Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:59295000-63675000

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gprin3 6 59347226 to 59426294 79068 - protein coding gene GPRIN family member 3
Tssr56759 6 59408759 to 59408762 3 + TSS region transcription start site region 56759
Cpgi17493 6 59426021 to 59426577 556 CpG island CpG island 17493
Tssr61184 6 59426279 to 59426345 66 - TSS region transcription start site region 61184
Gm35195 6 59698167 to 59705903 7736 + lncRNA gene predicted gene, 35195
Gm22622 6 59705746 to 59705874 128 - snoRNA gene predicted gene, 22622
Tssr56760 6 59710716 to 59710736 20 + TSS region transcription start site region 56760
D6Mit120 6 59878547 to 59878694 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 120
Gm18012 6 59942351 to 59943308 957 + pseudogene predicted gene, 18012
Gm22723 6 60071058 to 60071186 128 - snoRNA gene predicted gene, 22723
Gm5570 6 60078019 to 60150045 72026 + lincRNA gene predicted gene 5570
Tssr56761 6 60177654 to 60177678 24 + TSS region transcription start site region 56761
Gm46985 6 60179142 to 60181776 2634 + protein coding gene predicted gene, 46985
n-R5s162 6 60250792 to 60250910 118 + rRNA gene nuclear encoded rRNA 5S 162
A530053G22Rik 6 60279043 to 60403707 124664 - lncRNA gene RIKEN cDNA A530053G22 gene
Gm35335 6 60339805 to 60374268 34463 + lncRNA gene predicted gene, 35335
D6Slab2 6 60393081 to 60393287 206 DNA segment DNA segment, Chr 6, Schoepfer Lab 2
Tssr61185 6 60403667 to 60403681 14 - TSS region transcription start site region 61185
Tssr61186 6 60403692 to 60403712 20 - TSS region transcription start site region 61186
Gm38823 6 60411196 to 60449685 38489 + lncRNA gene predicted gene, 38823
Gm44389 6 60461933 to 60462114 181 - pseudogene predicted gene, 44389
Tssr61187 6 60462209 to 60462212 3 - TSS region transcription start site region 61187
Tssr56762 6 60485971 to 60485992 21 + TSS region transcription start site region 56762
Tssr1862 6 60486015 to 60486017 2 + TSS region transcription start site region 1862
Gm44410 6 60489956 to 60490445 489 + lincRNA gene predicted gene, 44410
Tssr56763 6 60586768 to 60586792 24 + TSS region transcription start site region 56763
Gm35386 6 60586778 to 60591189 4411 + lincRNA gene predicted gene, 35386
D6Slab3 6 60587716 to 60587910 194 DNA segment DNA segment, Chr 6, Schoepfer Lab 3
D6Slab4 6 60642052 to 60642445 393 DNA segment DNA segment, Chr 6, Schoepfer Lab 4
D6Slab11 6 60673740 to 60674090 350 DNA segment DNA segment, Chr 6, Schoepfer Lab 11
D6Slab12 6 60677785 to 60678170 385 DNA segment DNA segment, Chr 6, Schoepfer Lab 12
D6Slab13 6 60682517 to 60682820 303 DNA segment DNA segment, Chr 6, Schoepfer Lab 13
Tssr61188 6 60687305 to 60687316 11 - TSS region transcription start site region 61188
D6Slab5 6 60699961 to 60700347 386 DNA segment DNA segment, Chr 6, Schoepfer Lab 5
Snca 6 60731575 to 60829855 98280 - protein coding gene synuclein, alpha
Tssr61189 6 60759724 to 60759747 23 - TSS region transcription start site region 61189
Tssr61190 6 60760193 to 60760215 22 - TSS region transcription start site region 61190
Mageb16-ps2 6 60769967 to 60771059 1092 - pseudogene melanoma antigen family B, 16, pseudogene 2
Tssr61191 6 60774235 to 60774237 2 - TSS region transcription start site region 61191
D6Mit357 6 60779055 to 60779153 98 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 357
Tssr61192 6 60788515 to 60788537 22 - TSS region transcription start site region 61192
Gm43864 6 60791840 to 60795867 4027 - unclassified gene predicted gene, 43864
Tssr61193 6 60813558 to 60813566 8 - TSS region transcription start site region 61193
Tssr61194 6 60828083 to 60828096 13 - TSS region transcription start site region 61194
Tssr61195 6 60828099 to 60828111 12 - TSS region transcription start site region 61195
Tssr61196 6 60828832 to 60828883 51 - TSS region transcription start site region 61196
Tssr61197 6 60828889 to 60828900 11 - TSS region transcription start site region 61197
Tssr61198 6 60829705 to 60829752 47 - TSS region transcription start site region 61198
Tssr61199 6 60829786 to 60829823 37 - TSS region transcription start site region 61199
Tssr61200 6 60829826 to 60829849 23 - TSS region transcription start site region 61200
Gm43867 6 60882439 to 60882963 524 - pseudogene predicted gene, 43867
Mmrn1 6 60944317 to 60989378 45061 + protein coding gene multimerin 1
Tssr56764 6 60944472 to 60944489 17 + TSS region transcription start site region 56764
Tssr61201 6 60993834 to 60993839 5 - TSS region transcription start site region 61201
Gm18838 6 61016852 to 61017736 884 - pseudogene predicted gene, 18838
D6Slab6 6 61034987 to 61035141 154 DNA segment DNA segment, Chr 6, Schoepfer Lab 6
D6Slab14 6 61037064 to 61037200 136 DNA segment DNA segment, Chr 6, Schoepfer Lab 14
D6Slab15 6 61039043 to 61040095 1052 DNA segment DNA segment, Chr 6, Schoepfer Lab 15
D6Slab16 6 61041158 to 61041341 183 DNA segment DNA segment, Chr 6, Schoepfer Lab 16
Gm43892 6 61044729 to 61044993 264 - pseudogene predicted gene, 43892
D6Slab7 6 61050498 to 61050784 286 DNA segment DNA segment, Chr 6, Schoepfer Lab 7
Gm43893 6 61064705 to 61069255 4550 - lincRNA gene predicted gene, 43893
D6Slab8 6 61113622 to 61113945 323 DNA segment DNA segment, Chr 6, Schoepfer Lab 8
Gm43894 6 61147220 to 61147907 687 - lincRNA gene predicted gene, 43894
A730020E08Rik 6 61175604 to 61180810 5206 - bidirectional promoter lncRNA gene RIKEN cDNA A730020E08 gene
Cpgi17494 6 61179877 to 61181382 1505 CpG island CpG island 17494
Tssr56765 6 61179974 to 61180002 28 + TSS region transcription start site region 56765
Tssr61202 6 61180176 to 61180210 34 - TSS region transcription start site region 61202
Tssr56766 6 61180313 to 61180400 87 + TSS region transcription start site region 56766
Ccser1 6 61180325 to 62382863 1202538 + protein coding gene coiled-coil serine rich 1
Tssr56767 6 61180443 to 61180488 45 + TSS region transcription start site region 56767
Tssr56768 6 61180490 to 61180513 23 + TSS region transcription start site region 56768
D6Slab9 6 61189562 to 61189799 237 DNA segment DNA segment, Chr 6, Schoepfer Lab 9
Tssr56769 6 61204843 to 61204851 8 + TSS region transcription start site region 56769
B230204D01Rik 6 61231733 to 61234462 2729 unclassified gene RIKEN cDNA B230204D01 gene
Tssr56770 6 61350978 to 61350983 5 + TSS region transcription start site region 56770
D6Slab10 6 61389364 to 61389654 290 DNA segment DNA segment, Chr 6, Schoepfer Lab 10
Gm43898 6 61400607 to 61401030 423 + pseudogene predicted gene, 43898
D6Mit356 6 61581138 to 61581246 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 356
Gm43896 6 61975098 to 61977129 2031 + unclassified gene predicted gene, 43896
A730075L09Rik 6 61993053 to 61996388 3335 unclassified gene RIKEN cDNA A730075L09 gene
Tssr56771 6 62050815 to 62050842 27 + TSS region transcription start site region 56771
Tssr56772 6 62052083 to 62052087 4 + TSS region transcription start site region 56772
Tssr56773 6 62057057 to 62057060 3 + TSS region transcription start site region 56773
Tssr56774 6 62109096 to 62109101 5 + TSS region transcription start site region 56774
Tssr56775 6 62119536 to 62119541 5 + TSS region transcription start site region 56775
Tssr56776 6 62165963 to 62165967 4 + TSS region transcription start site region 56776
Tssr56777 6 62167227 to 62167233 6 + TSS region transcription start site region 56777
Gm43897 6 62293702 to 62294010 308 - pseudogene predicted gene, 43897
Gm43895 6 62307727 to 62309262 1535 - pseudogene predicted gene, 43895
Gm19237 6 62582103 to 62583184 1081 + pseudogene predicted gene, 19237
Gm44088 6 62630581 to 62630817 236 + pseudogene predicted gene, 44088
Tssr56778 6 62638159 to 62638186 27 + TSS region transcription start site region 56778
D6Mit94 6 62665403 to 62665574 171 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 94
Gm44092 6 62756797 to 62757054 257 + pseudogene predicted gene, 44092
Gm18540 6 62820108 to 62820633 525 + pseudogene predicted gene, 18540
Gm5001 6 62929146 to 62929476 330 + pseudogene predicted gene 5001
Tssr61203 6 63031014 to 63031015 1 - TSS region transcription start site region 61203
Gm19131 6 63046128 to 63046733 605 - pseudogene predicted gene, 19131
Nasp-ps1 6 63160275 to 63160965 690 + pseudogene nuclear autoantigenic sperm protein (histone-binding), pseudogene 1
Gm22212 6 63200041 to 63200146 105 - snRNA gene predicted gene, 22212
Gm46990 6 63245820 to 63249235 3415 + lncRNA gene predicted gene, 46990
9330118I20Rik 6 63248494 to 63257625 9131 - unclassified gene RIKEN cDNA 9330118I20 gene
Tssr56779 6 63255877 to 63255886 9 + TSS region transcription start site region 56779
Tssr56780 6 63255892 to 63255903 11 + TSS region transcription start site region 56780
Cpgi17495 6 63255898 to 63258090 2192 CpG island CpG island 17495
Grid2 6 63255903 to 64704322 1448419 + protein coding gene glutamate receptor, ionotropic, delta 2
Tssr56781 6 63255935 to 63255954 19 + TSS region transcription start site region 56781
Tssr56782 6 63255971 to 63256036 65 + TSS region transcription start site region 56782
Tssr56783 6 63256052 to 63256069 17 + TSS region transcription start site region 56783
Tssr56784 6 63256094 to 63256104 10 + TSS region transcription start site region 56784
Tssr56785 6 63256107 to 63256126 19 + TSS region transcription start site region 56785
Tssr56786 6 63256359 to 63256381 22 + TSS region transcription start site region 56786
Tssr56787 6 63256621 to 63256627 6 + TSS region transcription start site region 56787
Tssr56788 6 63257807 to 63257809 2 + TSS region transcription start site region 56788
Tssr56789 6 63257913 to 63257923 10 + TSS region transcription start site region 56789
Gm44071 6 63324672 to 63328441 3769 - antisense lncRNA gene predicted gene, 44071
Tssr61204 6 63328436 to 63328449 13 - TSS region transcription start site region 61204
Tssr56790 6 63331509 to 63331512 3 + TSS region transcription start site region 56790
Tssr56791 6 63336734 to 63336737 3 + TSS region transcription start site region 56791
D6Rck301 6 63360427 to 63360673 246 DNA segment DNA segment, Chr 6, Rockefeller University 301
D6Mit121 6 63430907 to 63431001 94 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 121
Tssr56792 6 63516212 to 63516239 27 + TSS region transcription start site region 56792
Tssr56793 6 63546758 to 63546760 2 + TSS region transcription start site region 56793
Tssr56794 6 63553122 to 63553129 7 + TSS region transcription start site region 56794
Tssr56795 6 63579836 to 63579839 3 + TSS region transcription start site region 56795
Tssr56796 6 63599418 to 63599423 5 + TSS region transcription start site region 56796
Tssr56797 6 63605435 to 63605440 5 + TSS region transcription start site region 56797
9630021D06Rik 6 63637496 to 63640454 2958 unclassified non-coding RNA gene RIKEN cDNA 9630021D06 gene