Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:5929322-6559585

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dync1i1 6 5725639 to 6028039 302400 + protein coding gene dynein cytoplasmic 1 intermediate chain 1
Tssr54868 6 5959289 to 5959291 2 + TSS region transcription start site region 54868
1700019G24Rik 6 5963909 to 5977393 13484 - antisense lncRNA gene RIKEN cDNA 1700019G24 gene
Tssr59760 6 5977347 to 5977393 46 - TSS region transcription start site region 59760
Tssr59761 6 5977396 to 5977408 12 - TSS region transcription start site region 59761
Cpgi17134 6 6005660 to 6006458 798 CpG island CpG island 17134
Slc25a13 6 6041218 to 6217173 175955 - protein coding gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
Tssr59762 6 6056247 to 6056251 4 - TSS region transcription start site region 59762
D6Ertd439e 6 6068200 to 6068448 248 DNA segment DNA segment, Chr 6, ERATO Doi 439, expressed
Tssr59763 6 6104778 to 6104783 5 - TSS region transcription start site region 59763
Tssr54869 6 6118353 to 6118354 1 + TSS region transcription start site region 54869
Tssr59764 6 6169775 to 6169778 3 - TSS region transcription start site region 59764
Tssr59765 6 6215350 to 6215362 12 - TSS region transcription start site region 59765
Cpgi17135 6 6216660 to 6217435 775 CpG island CpG island 17135
Tssr59766 6 6217023 to 6217125 102 - TSS region transcription start site region 59766
Tssr59767 6 6217128 to 6217149 21 - TSS region transcription start site region 59767
Tel-rs3 6 6244322 to 6244585 263 unclassified gene telomere, related sequence 3
Gm20619 6 6248659 to 6377422 128763 + lincRNA gene predicted gene 20619
Tssr54870 6 6248675 to 6248693 18 + TSS region transcription start site region 54870
Tssr54871 6 6299428 to 6299438 10 + TSS region transcription start site region 54871
Tssr54872 6 6299439 to 6299453 14 + TSS region transcription start site region 54872
Tssr54873 6 6299461 to 6299475 14 + TSS region transcription start site region 54873
Gm34749 6 6312153 to 6323579 11426 - lncRNA gene predicted gene, 34749
Gm8649 6 6329762 to 6329994 232 - pseudogene predicted gene 8649
Gm27018 6 6329998 to 6330222 224 - pseudogene predicted gene, 27018
Tssr54874 6 6330316 to 6330320 4 + TSS region transcription start site region 54874
Gm8652 6 6351216 to 6352147 931 - pseudogene predicted gene 8652
Tssr59768 6 6357139 to 6357146 7 - TSS region transcription start site region 59768
Gm20617 6 6456189 to 6484487 28298 - lincRNA gene predicted gene 20617
Gm20685 6 6483022 to 6508616 25594 + lincRNA gene predicted gene 20685
Sem1 6 6558275 to 6578658 20383 - protein coding gene SEM1, 26S proteasome complex subunit