Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:58883536-59074502

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24 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Herc3 6 58831465 to 58920398 88933 + protein coding gene hect domain and RLD 3
Nap1l5 6 58905233 to 58907076 1843 - protein coding gene nucleosome assembly protein 1-like 5
Tssr61172 6 58906250 to 58906261 11 - TSS region transcription start site region 61172
Cpgi17490 6 58906502 to 58907297 795 CpG island CpG island 17490
Tssr56753 6 58906544 to 58906579 35 + TSS region transcription start site region 56753
Tssr61173 6 58907025 to 58907042 17 - TSS region transcription start site region 61173
Tssr61174 6 58907053 to 58907098 45 - TSS region transcription start site region 61174
Tssr61175 6 58907101 to 58907119 18 - TSS region transcription start site region 61175
Tssr61176 6 58907120 to 58907131 11 - TSS region transcription start site region 61176
Tssr56754 6 58909175 to 58909179 4 + TSS region transcription start site region 56754
Fam13a 6 58933536 to 59024502 90966 - protein coding gene family with sequence similarity 13, member A
Gm45060 6 58964874 to 58972234 7360 + antisense lncRNA gene predicted gene 45060
8430415O14Rik 6 58965215 to 58992308 27093 + lncRNA gene RIKEN cDNA 8430415O14 gene
Tssr61177 6 58965499 to 58965523 24 - TSS region transcription start site region 61177
BB365896 6 58965655 to 59002083 36428 + antisense lncRNA gene expressed sequence BB365896
Gm45061 6 58973197 to 58975291 2094 + unclassified gene predicted gene 45061
Tssr61178 6 59016833 to 59016878 45 - TSS region transcription start site region 61178
Tssr61179 6 59016942 to 59016954 12 - TSS region transcription start site region 61179
Tssr61180 6 59017070 to 59017108 38 - TSS region transcription start site region 61180
Cpgi17491 6 59024133 to 59024623 490 CpG island CpG island 17491
Tssr61181 6 59024429 to 59024450 21 - TSS region transcription start site region 61181
Tssr61182 6 59024453 to 59024465 12 - TSS region transcription start site region 61182
Tssr61183 6 59024470 to 59024511 41 - TSS region transcription start site region 61183
Gm19165 6 59036889 to 59039322 2433 + pseudogene predicted gene, 19165