Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:58629956-62350445

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abcg2 6 58584491 to 58692451 107960 + protein coding gene ATP binding cassette subfamily G member 2 (Junior blood group)
Cpgi17488 6 58640273 to 58640909 636 CpG island CpG island 17488
Tssr56741 6 58640536 to 58640596 60 + TSS region transcription start site region 56741
Tssr56742 6 58640598 to 58640610 12 + TSS region transcription start site region 56742
Tssr56743 6 58643996 to 58644007 11 + TSS region transcription start site region 56743
Tssr56744 6 58644010 to 58644056 46 + TSS region transcription start site region 56744
Tssr56745 6 58644212 to 58644217 5 + TSS region transcription start site region 56745
2310061B05Rik 6 58679710 to 58680634 924 unclassified gene RIKEN cDNA 2310061B05 gene
Gm38822 6 58758909 to 58813748 54839 - lncRNA gene predicted gene, 38822
Tssr61170 6 58780511 to 58780526 15 - TSS region transcription start site region 61170
Tssr61171 6 58780535 to 58780567 32 - TSS region transcription start site region 61171
Gm43899 6 58781692 to 58781937 245 - pseudogene predicted gene, 43899
Cpgi17489 6 58831015 to 58832063 1048 CpG island CpG island 17489
Tssr56746 6 58831456 to 58831504 48 + TSS region transcription start site region 56746
Herc3 6 58831465 to 58920398 88933 + protein coding gene hect domain and RLD 3
Tssr56747 6 58831513 to 58831529 16 + TSS region transcription start site region 56747
Tssr56748 6 58831551 to 58831566 15 + TSS region transcription start site region 56748
Tssr56749 6 58831880 to 58831898 18 + TSS region transcription start site region 56749
Tssr56750 6 58833689 to 58833734 45 + TSS region transcription start site region 56750
Tssr56751 6 58862879 to 58862910 31 + TSS region transcription start site region 56751
Tssr56752 6 58862964 to 58862976 12 + TSS region transcription start site region 56752
Nap1l5 6 58905233 to 58907076 1843 - protein coding gene nucleosome assembly protein 1-like 5
Tssr61172 6 58906250 to 58906261 11 - TSS region transcription start site region 61172
Cpgi17490 6 58906502 to 58907297 795 CpG island CpG island 17490
Tssr56753 6 58906544 to 58906579 35 + TSS region transcription start site region 56753
Tssr61173 6 58907025 to 58907042 17 - TSS region transcription start site region 61173
Tssr61174 6 58907053 to 58907098 45 - TSS region transcription start site region 61174
Tssr61175 6 58907101 to 58907119 18 - TSS region transcription start site region 61175
Tssr61176 6 58907120 to 58907131 11 - TSS region transcription start site region 61176
Tssr56754 6 58909175 to 58909179 4 + TSS region transcription start site region 56754
Fam13a 6 58933536 to 59024502 90966 - protein coding gene family with sequence similarity 13, member A
Gm45060 6 58964874 to 58972234 7360 + antisense lncRNA gene predicted gene 45060
8430415O14Rik 6 58965215 to 58992308 27093 + lncRNA gene RIKEN cDNA 8430415O14 gene
Tssr61177 6 58965499 to 58965523 24 - TSS region transcription start site region 61177
BB365896 6 58965655 to 59002083 36428 + antisense lncRNA gene expressed sequence BB365896
Gm45061 6 58973197 to 58975291 2094 + unclassified gene predicted gene 45061
Tssr61178 6 59016833 to 59016878 45 - TSS region transcription start site region 61178
Tssr61179 6 59016942 to 59016954 12 - TSS region transcription start site region 61179
Tssr61180 6 59017070 to 59017108 38 - TSS region transcription start site region 61180
Cpgi17491 6 59024133 to 59024623 490 CpG island CpG island 17491
Tssr61181 6 59024429 to 59024450 21 - TSS region transcription start site region 61181
Tssr61182 6 59024453 to 59024465 12 - TSS region transcription start site region 61182
Tssr61183 6 59024470 to 59024511 41 - TSS region transcription start site region 61183
Gm19165 6 59036889 to 59039322 2433 + pseudogene predicted gene, 19165
Gm22367 6 59099253 to 59099384 131 + snoRNA gene predicted gene, 22367
Lmr4c 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4c
Lmr4 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4
Lmr4a 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4a
D6Mit122 6 59116373 to 59116515 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 122
Mts4 6 59116373 to 59116515 142 QTL mammary tumor susceptibility 4
Gm43905 6 59193050 to 59193253 203 - pseudogene predicted gene, 43905
Cpgi17492 6 59208688 to 59209511 823 CpG island CpG island 17492
Tssr56755 6 59208861 to 59208878 17 + TSS region transcription start site region 56755
Tigd2 6 59208870 to 59212033 3163 + protein coding gene tigger transposable element derived 2
Tssr56756 6 59208888 to 59208958 70 + TSS region transcription start site region 56756
Tssr56757 6 59209064 to 59209075 11 + TSS region transcription start site region 56757
Tssr56758 6 59233462 to 59233486 24 + TSS region transcription start site region 56758
Gprin3 6 59347226 to 59426294 79068 - protein coding gene GPRIN family member 3
Tssr56759 6 59408759 to 59408762 3 + TSS region transcription start site region 56759
Cpgi17493 6 59426021 to 59426577 556 CpG island CpG island 17493
Tssr61184 6 59426279 to 59426345 66 - TSS region transcription start site region 61184
Gm35195 6 59698167 to 59705903 7736 + lncRNA gene predicted gene, 35195
Gm22622 6 59705746 to 59705874 128 - snoRNA gene predicted gene, 22622
Tssr56760 6 59710716 to 59710736 20 + TSS region transcription start site region 56760
D6Mit120 6 59878547 to 59878694 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 120
Gm18012 6 59942351 to 59943308 957 + pseudogene predicted gene, 18012
Gm22723 6 60071058 to 60071186 128 - snoRNA gene predicted gene, 22723
Gm5570 6 60078019 to 60150045 72026 + lincRNA gene predicted gene 5570
Tssr56761 6 60177654 to 60177678 24 + TSS region transcription start site region 56761
Gm46985 6 60179142 to 60181776 2634 + protein coding gene predicted gene, 46985
n-R5s162 6 60250792 to 60250910 118 + rRNA gene nuclear encoded rRNA 5S 162
A530053G22Rik 6 60279043 to 60403707 124664 - lncRNA gene RIKEN cDNA A530053G22 gene
Gm35335 6 60339805 to 60374268 34463 + lncRNA gene predicted gene, 35335
D6Slab2 6 60393081 to 60393287 206 DNA segment DNA segment, Chr 6, Schoepfer Lab 2
Tssr61185 6 60403667 to 60403681 14 - TSS region transcription start site region 61185
Tssr61186 6 60403692 to 60403712 20 - TSS region transcription start site region 61186
Gm38823 6 60411196 to 60449685 38489 + lncRNA gene predicted gene, 38823
Gm44389 6 60461933 to 60462114 181 - pseudogene predicted gene, 44389
Tssr61187 6 60462209 to 60462212 3 - TSS region transcription start site region 61187
Tssr56762 6 60485971 to 60485992 21 + TSS region transcription start site region 56762
Tssr1862 6 60486015 to 60486017 2 + TSS region transcription start site region 1862
Gm44410 6 60489956 to 60490445 489 + lincRNA gene predicted gene, 44410
Tssr56763 6 60586768 to 60586792 24 + TSS region transcription start site region 56763
Gm35386 6 60586778 to 60591189 4411 + lincRNA gene predicted gene, 35386
D6Slab3 6 60587716 to 60587910 194 DNA segment DNA segment, Chr 6, Schoepfer Lab 3
D6Slab4 6 60642052 to 60642445 393 DNA segment DNA segment, Chr 6, Schoepfer Lab 4
D6Slab11 6 60673740 to 60674090 350 DNA segment DNA segment, Chr 6, Schoepfer Lab 11
D6Slab12 6 60677785 to 60678170 385 DNA segment DNA segment, Chr 6, Schoepfer Lab 12
D6Slab13 6 60682517 to 60682820 303 DNA segment DNA segment, Chr 6, Schoepfer Lab 13
Tssr61188 6 60687305 to 60687316 11 - TSS region transcription start site region 61188
D6Slab5 6 60699961 to 60700347 386 DNA segment DNA segment, Chr 6, Schoepfer Lab 5
Snca 6 60731575 to 60829855 98280 - protein coding gene synuclein, alpha
Tssr61189 6 60759724 to 60759747 23 - TSS region transcription start site region 61189
Tssr61190 6 60760193 to 60760215 22 - TSS region transcription start site region 61190
Mageb16-ps2 6 60769967 to 60771059 1092 - pseudogene melanoma antigen family B, 16, pseudogene 2
Tssr61191 6 60774235 to 60774237 2 - TSS region transcription start site region 61191
D6Mit357 6 60779055 to 60779153 98 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 357
Tssr61192 6 60788515 to 60788537 22 - TSS region transcription start site region 61192
Gm43864 6 60791840 to 60795867 4027 - unclassified gene predicted gene, 43864
Tssr61193 6 60813558 to 60813566 8 - TSS region transcription start site region 61193
Tssr61194 6 60828083 to 60828096 13 - TSS region transcription start site region 61194
Tssr61195 6 60828099 to 60828111 12 - TSS region transcription start site region 61195
Tssr61196 6 60828832 to 60828883 51 - TSS region transcription start site region 61196
Tssr61197 6 60828889 to 60828900 11 - TSS region transcription start site region 61197
Tssr61198 6 60829705 to 60829752 47 - TSS region transcription start site region 61198
Tssr61199 6 60829786 to 60829823 37 - TSS region transcription start site region 61199
Tssr61200 6 60829826 to 60829849 23 - TSS region transcription start site region 61200
Gm43867 6 60882439 to 60882963 524 - pseudogene predicted gene, 43867
Mmrn1 6 60944317 to 60989378 45061 + protein coding gene multimerin 1
Tssr56764 6 60944472 to 60944489 17 + TSS region transcription start site region 56764
Tssr61201 6 60993834 to 60993839 5 - TSS region transcription start site region 61201
Gm18838 6 61016852 to 61017736 884 - pseudogene predicted gene, 18838
D6Slab6 6 61034987 to 61035141 154 DNA segment DNA segment, Chr 6, Schoepfer Lab 6
D6Slab14 6 61037064 to 61037200 136 DNA segment DNA segment, Chr 6, Schoepfer Lab 14
D6Slab15 6 61039043 to 61040095 1052 DNA segment DNA segment, Chr 6, Schoepfer Lab 15
D6Slab16 6 61041158 to 61041341 183 DNA segment DNA segment, Chr 6, Schoepfer Lab 16
Gm43892 6 61044729 to 61044993 264 - pseudogene predicted gene, 43892
D6Slab7 6 61050498 to 61050784 286 DNA segment DNA segment, Chr 6, Schoepfer Lab 7
Gm43893 6 61064705 to 61069255 4550 - lincRNA gene predicted gene, 43893
D6Slab8 6 61113622 to 61113945 323 DNA segment DNA segment, Chr 6, Schoepfer Lab 8
Gm43894 6 61147220 to 61147907 687 - lincRNA gene predicted gene, 43894
A730020E08Rik 6 61175604 to 61180810 5206 - bidirectional promoter lncRNA gene RIKEN cDNA A730020E08 gene
Cpgi17494 6 61179877 to 61181382 1505 CpG island CpG island 17494
Tssr56765 6 61179974 to 61180002 28 + TSS region transcription start site region 56765
Tssr61202 6 61180176 to 61180210 34 - TSS region transcription start site region 61202
Tssr56766 6 61180313 to 61180400 87 + TSS region transcription start site region 56766
Ccser1 6 61180325 to 62382863 1202538 + protein coding gene coiled-coil serine rich 1
Tssr56767 6 61180443 to 61180488 45 + TSS region transcription start site region 56767
Tssr56768 6 61180490 to 61180513 23 + TSS region transcription start site region 56768
D6Slab9 6 61189562 to 61189799 237 DNA segment DNA segment, Chr 6, Schoepfer Lab 9
Tssr56769 6 61204843 to 61204851 8 + TSS region transcription start site region 56769
B230204D01Rik 6 61231733 to 61234462 2729 unclassified gene RIKEN cDNA B230204D01 gene
Tssr56770 6 61350978 to 61350983 5 + TSS region transcription start site region 56770
D6Slab10 6 61389364 to 61389654 290 DNA segment DNA segment, Chr 6, Schoepfer Lab 10
Gm43898 6 61400607 to 61401030 423 + pseudogene predicted gene, 43898
D6Mit356 6 61581138 to 61581246 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 356
Gm43896 6 61975098 to 61977129 2031 + unclassified gene predicted gene, 43896
A730075L09Rik 6 61993053 to 61996388 3335 unclassified gene RIKEN cDNA A730075L09 gene
Tssr56771 6 62050815 to 62050842 27 + TSS region transcription start site region 56771
Tssr56772 6 62052083 to 62052087 4 + TSS region transcription start site region 56772
Tssr56773 6 62057057 to 62057060 3 + TSS region transcription start site region 56773
Tssr56774 6 62109096 to 62109101 5 + TSS region transcription start site region 56774
Tssr56775 6 62119536 to 62119541 5 + TSS region transcription start site region 56775
Tssr56776 6 62165963 to 62165967 4 + TSS region transcription start site region 56776
Tssr56777 6 62167227 to 62167233 6 + TSS region transcription start site region 56777
Gm43897 6 62293702 to 62294010 308 - pseudogene predicted gene, 43897
Gm43895 6 62307727 to 62309262 1535 - pseudogene predicted gene, 43895