Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:58362226-60411294

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20674 6 58394054 to 58394422 368 + pseudogene predicted gene 20674
Vmn1r-ps20 6 58406413 to 58407327 914 - pseudogene vomeronasal 1 receptor, pseudogene 20
Vmn1r30 6 58434848 to 58443624 8776 - protein coding gene vomeronasal 1 receptor 30
Gm44016 6 58438695 to 58438858 163 - pseudogene predicted gene, 44016
Vmn1r-ps21 6 58455097 to 58455993 896 - pseudogene vomeronasal 1 receptor, pseudogene 21
Gm20673 6 58461107 to 58461536 429 + pseudogene predicted gene 20673
Vmn1r31 6 58471967 to 58472878 911 - protein coding gene vomeronasal 1 receptor 31
Vmn1r-ps22 6 58494348 to 58495247 899 - pseudogene vomeronasal 1 receptor, pseudogene 22
Gm35077 6 58497956 to 58533690 35734 - lincRNA gene predicted gene, 35077
Vmn1r-ps23 6 58504483 to 58504695 212 - pseudogene vomeronasal 1 receptor, pseudogene 23
Gm20672 6 58512271 to 58512531 260 + pseudogene predicted gene 20672
Tssr61169 6 58533613 to 58533640 27 - TSS region transcription start site region 61169
Gm45943 6 58533975 to 58584255 50280 - protein coding gene predicted gene, 45943
Abcg2 6 58584491 to 58692451 107960 + protein coding gene ATP binding cassette subfamily G member 2 (Junior blood group)
Tssr56739 6 58596584 to 58596615 31 + TSS region transcription start site region 56739
Tssr56740 6 58596698 to 58596710 12 + TSS region transcription start site region 56740
V25Dq4 6 58600000 to 58600000 0 QTL vitamin D inactive form serum level QTL 4
Cpgi17488 6 58640273 to 58640909 636 CpG island CpG island 17488
Tssr56741 6 58640536 to 58640596 60 + TSS region transcription start site region 56741
Tssr56742 6 58640598 to 58640610 12 + TSS region transcription start site region 56742
Tssr56743 6 58643996 to 58644007 11 + TSS region transcription start site region 56743
Tssr56744 6 58644010 to 58644056 46 + TSS region transcription start site region 56744
Tssr56745 6 58644212 to 58644217 5 + TSS region transcription start site region 56745
2310061B05Rik 6 58679710 to 58680634 924 unclassified gene RIKEN cDNA 2310061B05 gene
Gm38822 6 58758909 to 58813748 54839 - lncRNA gene predicted gene, 38822
Tssr61170 6 58780511 to 58780526 15 - TSS region transcription start site region 61170
Tssr61171 6 58780535 to 58780567 32 - TSS region transcription start site region 61171
Gm43899 6 58781692 to 58781937 245 - pseudogene predicted gene, 43899
Cpgi17489 6 58831015 to 58832063 1048 CpG island CpG island 17489
Tssr56746 6 58831456 to 58831504 48 + TSS region transcription start site region 56746
Herc3 6 58831465 to 58920398 88933 + protein coding gene hect domain and RLD 3
Tssr56747 6 58831513 to 58831529 16 + TSS region transcription start site region 56747
Tssr56748 6 58831551 to 58831566 15 + TSS region transcription start site region 56748
Tssr56749 6 58831880 to 58831898 18 + TSS region transcription start site region 56749
Tssr56750 6 58833689 to 58833734 45 + TSS region transcription start site region 56750
Tssr56751 6 58862879 to 58862910 31 + TSS region transcription start site region 56751
Tssr56752 6 58862964 to 58862976 12 + TSS region transcription start site region 56752
Nap1l5 6 58905233 to 58907076 1843 - protein coding gene nucleosome assembly protein 1-like 5
Tssr61172 6 58906250 to 58906261 11 - TSS region transcription start site region 61172
Cpgi17490 6 58906502 to 58907297 795 CpG island CpG island 17490
Tssr56753 6 58906544 to 58906579 35 + TSS region transcription start site region 56753
Tssr61173 6 58907025 to 58907042 17 - TSS region transcription start site region 61173
Tssr61174 6 58907053 to 58907098 45 - TSS region transcription start site region 61174
Tssr61175 6 58907101 to 58907119 18 - TSS region transcription start site region 61175
Tssr61176 6 58907120 to 58907131 11 - TSS region transcription start site region 61176
Tssr56754 6 58909175 to 58909179 4 + TSS region transcription start site region 56754
Fam13a 6 58933536 to 59024502 90966 - protein coding gene family with sequence similarity 13, member A
Gm45060 6 58964874 to 58972234 7360 + antisense lncRNA gene predicted gene 45060
8430415O14Rik 6 58965215 to 58992308 27093 + lncRNA gene RIKEN cDNA 8430415O14 gene
Tssr61177 6 58965499 to 58965523 24 - TSS region transcription start site region 61177
BB365896 6 58965655 to 59002083 36428 + antisense lncRNA gene expressed sequence BB365896
Gm45061 6 58973197 to 58975291 2094 + unclassified gene predicted gene 45061
Tssr61178 6 59016833 to 59016878 45 - TSS region transcription start site region 61178
Tssr61179 6 59016942 to 59016954 12 - TSS region transcription start site region 61179
Tssr61180 6 59017070 to 59017108 38 - TSS region transcription start site region 61180
Cpgi17491 6 59024133 to 59024623 490 CpG island CpG island 17491
Tssr61181 6 59024429 to 59024450 21 - TSS region transcription start site region 61181
Tssr61182 6 59024453 to 59024465 12 - TSS region transcription start site region 61182
Tssr61183 6 59024470 to 59024511 41 - TSS region transcription start site region 61183
Gm19165 6 59036889 to 59039322 2433 + pseudogene predicted gene, 19165
Gm22367 6 59099253 to 59099384 131 + snoRNA gene predicted gene, 22367
Lmr4a 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4a
D6Mit122 6 59116373 to 59116515 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 122
Lmr4c 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4c
Lmr4 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4
Mts4 6 59116373 to 59116515 142 QTL mammary tumor susceptibility 4
Gm43905 6 59193050 to 59193253 203 - pseudogene predicted gene, 43905
Cpgi17492 6 59208688 to 59209511 823 CpG island CpG island 17492
Tssr56755 6 59208861 to 59208878 17 + TSS region transcription start site region 56755
Tigd2 6 59208870 to 59212033 3163 + protein coding gene tigger transposable element derived 2
Tssr56756 6 59208888 to 59208958 70 + TSS region transcription start site region 56756
Tssr56757 6 59209064 to 59209075 11 + TSS region transcription start site region 56757
Tssr56758 6 59233462 to 59233486 24 + TSS region transcription start site region 56758
Gprin3 6 59347226 to 59426294 79068 - protein coding gene GPRIN family member 3
Tssr56759 6 59408759 to 59408762 3 + TSS region transcription start site region 56759
Cpgi17493 6 59426021 to 59426577 556 CpG island CpG island 17493
Tssr61184 6 59426279 to 59426345 66 - TSS region transcription start site region 61184
Gm35195 6 59698167 to 59705903 7736 + lncRNA gene predicted gene, 35195
Gm22622 6 59705746 to 59705874 128 - snoRNA gene predicted gene, 22622
Tssr56760 6 59710716 to 59710736 20 + TSS region transcription start site region 56760
D6Mit120 6 59878547 to 59878694 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 120
Gm18012 6 59942351 to 59943308 957 + pseudogene predicted gene, 18012
Gm22723 6 60071058 to 60071186 128 - snoRNA gene predicted gene, 22723
Gm5570 6 60078019 to 60150045 72026 + lincRNA gene predicted gene 5570
Tssr56761 6 60177654 to 60177678 24 + TSS region transcription start site region 56761
Gm46985 6 60179142 to 60181776 2634 + protein coding gene predicted gene, 46985
n-R5s162 6 60250792 to 60250910 118 + rRNA gene nuclear encoded rRNA 5S 162
A530053G22Rik 6 60279043 to 60403707 124664 - lncRNA gene RIKEN cDNA A530053G22 gene
Gm35335 6 60339805 to 60374268 34463 + lncRNA gene predicted gene, 35335
D6Slab2 6 60393081 to 60393287 206 DNA segment DNA segment, Chr 6, Schoepfer Lab 2
Tssr61185 6 60403667 to 60403681 14 - TSS region transcription start site region 61185
Tssr61186 6 60403692 to 60403712 20 - TSS region transcription start site region 61186
Gm38823 6 60411196 to 60449685 38489 + lncRNA gene predicted gene, 38823