Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:57650885-58621143

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Herc6 6 57581000 to 57664632 83632 + protein coding gene hect domain and RLD 6
Tssr56722 6 57654423 to 57654466 43 + TSS region transcription start site region 56722
Tssr56723 6 57663000 to 57663025 25 + TSS region transcription start site region 56723
Tssr56724 6 57663257 to 57663273 16 + TSS region transcription start site region 56724
Tssr56725 6 57667321 to 57667340 19 + TSS region transcription start site region 56725
Gm37397 6 57684739 to 57687580 2841 - unclassified gene predicted gene, 37397
D6Mit317 6 57685239 to 57685363 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 317
Pyurf 6 57686576 to 57692078 5502 - protein coding gene Pigy upstream reading frame
Gm26712 6 57689433 to 57689649 216 - pseudogene predicted gene, 26712
Cpgi17485 6 57691649 to 57692286 637 CpG island CpG island 17485
Tssr61162 6 57692007 to 57692084 77 - TSS region transcription start site region 61162
Tssr56726 6 57702472 to 57702523 51 + TSS region transcription start site region 56726
Lancl2 6 57702540 to 57739439 36899 + protein coding gene LanC (bacterial lantibiotic synthetase component C)-like 2
Tssr56727 6 57702546 to 57702558 12 + TSS region transcription start site region 56727
Cpgi17486 6 57702565 to 57703580 1015 CpG island CpG island 17486
Tssr56728 6 57702647 to 57702658 11 + TSS region transcription start site region 56728
Tssr56729 6 57702914 to 57702925 11 + TSS region transcription start site region 56729
Tssr56730 6 57702927 to 57702940 13 + TSS region transcription start site region 56730
Tssr56731 6 57703060 to 57703093 33 + TSS region transcription start site region 56731
Tssr56732 6 57703378 to 57703445 67 + TSS region transcription start site region 56732
Tssr61163 6 57703856 to 57703903 47 - TSS region transcription start site region 61163
Tssr56733 6 57707416 to 57707446 30 + TSS region transcription start site region 56733
Vopp1 6 57752264 to 57825374 73110 - protein coding gene vesicular, overexpressed in cancer, prosurvival protein 1
Tssr56734 6 57823712 to 57823723 11 + TSS region transcription start site region 56734
Cpgi17487 6 57824428 to 57825711 1283 CpG island CpG island 17487
Tssr56735 6 57824485 to 57824498 13 + TSS region transcription start site region 56735
Tssr56736 6 57824537 to 57824557 20 + TSS region transcription start site region 56736
Tssr61164 6 57824633 to 57824663 30 - TSS region transcription start site region 61164
Tssr56737 6 57824645 to 57824649 4 + TSS region transcription start site region 56737
Tssr61165 6 57825055 to 57825141 86 - TSS region transcription start site region 61165
Tssr61166 6 57825144 to 57825166 22 - TSS region transcription start site region 61166
Tssr61167 6 57825282 to 57825305 23 - TSS region transcription start site region 61167
Tssr61168 6 57839915 to 57839922 7 - TSS region transcription start site region 61168
Vmn1r21 6 57843564 to 57844457 893 - protein coding gene vomeronasal 1 receptor 21
Gm44114 6 57845586 to 57848312 2726 + unclassified gene predicted gene, 44114
Gm25726 6 57859820 to 57859948 128 - snoRNA gene predicted gene, 25726
Vmn1r-ps12 6 57872416 to 57872916 500 - pseudogene vomeronasal 1 receptor, pseudogene 12
D6Mit385 6 57874076 to 57874158 82 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 385
Vmn1r22 6 57900082 to 57900990 908 - protein coding gene vomeronasal 1 receptor 22
Vmn1r23 6 57925883 to 57926791 908 - protein coding gene vomeronasal 1 receptor 23
Gm20660 6 57949683 to 57949971 288 - pseudogene predicted gene 20660
Gm3382 6 57950075 to 57950469 394 + pseudogene predicted gene 3382
Vmn1r24 6 57955641 to 57956531 890 - protein coding gene vomeronasal 1 receptor 24
Vmn1r25 6 57978394 to 57979302 908 - protein coding gene vomeronasal 1 receptor 25
Vmn1r-ps13 6 57993448 to 57993581 133 - pseudogene vomeronasal 1 receptor, pseudogene 13
Vmn1r26 6 58008183 to 58009202 1019 - protein coding gene vomeronasal 1 receptor 26
Rps15-ps2 6 58017477 to 58017757 280 + pseudogene ribosomal protein S15, pseudogene 2
Tssr56738 6 58017481 to 58017483 2 + TSS region transcription start site region 56738
Vmn1r-ps14 6 58048939 to 58049847 908 - pseudogene vomeronasal 1 receptor, pseudogene 14
Vmn1r-ps15 6 58077173 to 58078082 909 - pseudogene vomeronasal 1 receptor, pseudogene 15
Gm6695 6 58091076 to 58092247 1171 + pseudogene predicted gene 6695
Vmn1r-ps16 6 58108063 to 58108167 104 - pseudogene vomeronasal 1 receptor, pseudogene 16
Vmn1r-ps17 6 58115737 to 58116630 893 - pseudogene vomeronasal 1 receptor, pseudogene 17
Gm20718 6 58135885 to 58136143 258 + pseudogene predicted gene 20718
Gm43994 6 58192321 to 58194765 2444 + lincRNA gene predicted gene, 43994
Vmn1r-ps18 6 58206047 to 58206997 950 + pseudogene vomeronasal 1 receptor, pseudogene 18
Vmn1r27 6 58215106 to 58216017 911 - protein coding gene vomeronasal 1 receptor 27
Vmn1r-ps19 6 58256643 to 58257547 904 - pseudogene vomeronasal 1 receptor, pseudogene 19
Vmn1r28 6 58262294 to 58266082 3788 + protein coding gene vomeronasal 1 receptor 28
Vmn1r29 6 58307297 to 58308208 911 + protein coding gene vomeronasal 1 receptor 29
Gm20674 6 58394054 to 58394422 368 + pseudogene predicted gene 20674
Vmn1r-ps20 6 58406413 to 58407327 914 - pseudogene vomeronasal 1 receptor, pseudogene 20
Vmn1r30 6 58434848 to 58443624 8776 - protein coding gene vomeronasal 1 receptor 30
Gm44016 6 58438695 to 58438858 163 - pseudogene predicted gene, 44016
Vmn1r-ps21 6 58455097 to 58455993 896 - pseudogene vomeronasal 1 receptor, pseudogene 21
Gm20673 6 58461107 to 58461536 429 + pseudogene predicted gene 20673
Vmn1r31 6 58471967 to 58472878 911 - protein coding gene vomeronasal 1 receptor 31
Vmn1r-ps22 6 58494348 to 58495247 899 - pseudogene vomeronasal 1 receptor, pseudogene 22
Gm35077 6 58497956 to 58533690 35734 - lincRNA gene predicted gene, 35077
Vmn1r-ps23 6 58504483 to 58504695 212 - pseudogene vomeronasal 1 receptor, pseudogene 23
Gm20672 6 58512271 to 58512531 260 + pseudogene predicted gene 20672
Tssr61169 6 58533613 to 58533640 27 - TSS region transcription start site region 61169
Gm45943 6 58533975 to 58584255 50280 - protein coding gene predicted gene, 45943
Abcg2 6 58584491 to 58692451 107960 + protein coding gene ATP binding cassette subfamily G member 2 (Junior blood group)
Tssr56739 6 58596584 to 58596615 31 + TSS region transcription start site region 56739
Tssr56740 6 58596698 to 58596710 12 + TSS region transcription start site region 56740
V25Dq4 6 58600000 to 58600000 0 QTL vitamin D inactive form serum level QTL 4